mRNA_H-elongata_contig155517.3639.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig155517.3639.1
Unique NamemRNA_H-elongata_contig155517.3639.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig155517.3639.1 vs. uniprot
Match: D7FPF7_ECTSI (Probable extracellular nuclease (ISS) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPF7_ECTSI)

HSP 1 Score: 125 bits (315), Expect = 3.510e-31
Identity = 61/105 (58.10%), Postives = 80/105 (76.19%), Query Frame = 1 
Query:    1 CGRRLVLAGLAVFIYPGSSAQIAIEALLSVMFYAVFETLSPFADSLDMWLYRFGALIIYLSMYLALLLKVDVADEESHSQTVFAWLLIAAHCGMALVVIIYALFS 315
            CGRR+ L GLAVFIYPGS+AQ+A+E + +  F  + + LSPFAD LD WLYR GA +I++SM+L LLLKVD +DE+S SQ +FA LLI+AH GM L + + A+ S
Sbjct:  282 CGRRIALTGLAVFIYPGSAAQVALEVVFAAFFIGISDVLSPFADPLDAWLYRSGAWVIFISMFLTLLLKVDASDEDSQSQELFAKLLISAHVGMVLAIAVQAVLS 386
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BLAST of mRNA_H-elongata_contig155517.3639.1 vs. uniprot
Match: A0A6H5KHA3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHA3_9PHAE)

HSP 1 Score: 125 bits (315), Expect = 3.650e-31
Identity = 62/106 (58.49%), Postives = 80/106 (75.47%), Query Frame = 1 
Query:    1 CGRRLVLAGLAVFIYPGSSAQIAIEALLSVMFYAVFETLSPFADSLDMWLYRFGALIIYLSMYLALLLKVDVADEESHSQTVFAWLLIAAHCGMALVVIIYALFSA 318
            CGRR+VL GLAVF++PG++AQ+AIE   +     VFE L+PF D +D WLYR GAL+++ SMYLALLLKVD +DE S SQ VFA +L+AAH  M L V++ +L SA
Sbjct:  257 CGRRIVLTGLAVFLFPGTAAQVAIEVAFAAGLLVVFEVLAPFVDPMDAWLYRSGALVVFFSMYLALLLKVDASDENSESQQVFAAVLVAAHVSMVLAVLLSSLLSA 362
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BLAST of mRNA_H-elongata_contig155517.3639.1 vs. uniprot
Match: A0A6H5JWI3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWI3_9PHAE)

HSP 1 Score: 125 bits (315), Expect = 2.220e-30
Identity = 65/105 (61.90%), Postives = 80/105 (76.19%), Query Frame = 1 
Query:    1 CGRRLVLAGLAVFIYPGSSAQIAIEALLSVMFYAVFETLSPFADSLDMWLYRFGALIIYLSMYLALLLKVDVADEESHSQTVFAWLLIAAHCGMALVVIIYALFS 315
            CGRR+ L GLA F+ P S+AQ+AIE +L+ +F AV + LSPFAD  D WLYR GA II+ SMYLALLLKVD +DE+S SQ  FA +LIAAH GM LVV++ A+ S
Sbjct:  958 CGRRIALTGLAAFLLPDSAAQVAIEVVLAAIFMAVSDVLSPFADPFDGWLYRTGAWIIFFSMYLALLLKVDASDEDSQSQAAFAKVLIAAHVGMVLVVLVQAVLS 1062
[Close]
BLAST of mRNA_H-elongata_contig155517.3639.1 vs. uniprot
Match: A0A6H5L4E3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4E3_9PHAE)

HSP 1 Score: 117 bits (292), Expect = 5.070e-29
Identity = 60/105 (57.14%), Postives = 76/105 (72.38%), Query Frame = 1 
Query:    1 CGRRLVLAGLAVFIYPGSSAQIAIEALLSVMFYAVFETLSPFADSLDMWLYRFGALIIYLSMYLALLLKVDVADEESHSQTVFAWLLIAAHCGMALVVIIYALFS 315
            CGRR+VL GLA F+ P S+AQ+AIE +L+ +F AV + L PF D    WLYR G  II+ SMYLALLLKVDV+DE++ SQ  FA +LIAAH GM  V++  A+ S
Sbjct:  111 CGRRIVLTGLAAFLLPKSAAQVAIEVVLAAIFMAVSDVLPPFVDPFGAWLYRIGGWIIFFSMYLALLLKVDVSDEDNQSQAAFAKVLIAAHAGMVAVIVGQAVLS 215
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BLAST of mRNA_H-elongata_contig155517.3639.1 vs. uniprot
Match: D7FUB5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUB5_ECTSI)

HSP 1 Score: 117 bits (293), Expect = 3.610e-28
Identity = 60/106 (56.60%), Postives = 78/106 (73.58%), Query Frame = 1 
Query:    1 CGRRLVLAGLAVFIYPGSSAQIAIEALLSVMFYAVFETLSPFADSLDMWLYRFGALIIYLSMYLALLLKVDVADEESHSQTVFAWLLIAAHCGMALVVIIYALFSA 318
            CGRR+ L GLAVF++PG++AQ+AIE   +     VFE L+PF D +D  LYR GAL+++ SMYLALLLKVD +DE S SQ VFA +L+AAH  M L V++ +L SA
Sbjct:  235 CGRRIGLTGLAVFLFPGTAAQVAIEVAFAAGLLVVFEVLAPFVDPVDAGLYRSGALVVFYSMYLALLLKVDASDESSESQQVFAAVLVAAHVSMVLAVLLRSLLSA 340
[Close]
BLAST of mRNA_H-elongata_contig155517.3639.1 vs. uniprot
Match: A0A6H5L0E1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0E1_9PHAE)

HSP 1 Score: 114 bits (284), Expect = 3.260e-26
Identity = 58/103 (56.31%), Postives = 76/103 (73.79%), Query Frame = 1 
Query:    1 CGRRLVLAGLAVFIYPGSSAQIAIEALLSVMFYAVFETLSPFADSLDMWLYRFGALIIYLSMYLALLLKVDVADEESHSQTVFAWLLIAAHCGMALVVIIYAL 309
            C RR+ L G AVFIYP SSAQ+AI  LL+++F  V E LSPFA  ++MWLYR G  +++ SMYLALLL+VDV+DE + SQ VF+ +L+ AH  M LVV++  L
Sbjct:  169 CFRRIALTGFAVFIYPDSSAQVAIVLLLAIVFMVVSEFLSPFARPIEMWLYRTGHYVVFASMYLALLLRVDVSDENNQSQEVFSGVLVIAHAAMLLVVVLQGL 271
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BLAST of mRNA_H-elongata_contig155517.3639.1 vs. uniprot
Match: D7FTU5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTU5_ECTSI)

HSP 1 Score: 113 bits (283), Expect = 4.610e-26
Identity = 58/103 (56.31%), Postives = 76/103 (73.79%), Query Frame = 1 
Query:    1 CGRRLVLAGLAVFIYPGSSAQIAIEALLSVMFYAVFETLSPFADSLDMWLYRFGALIIYLSMYLALLLKVDVADEESHSQTVFAWLLIAAHCGMALVVIIYAL 309
            C RR+ L G AVFIYP SSAQ+AI  LL+++F  V E LSPFA  ++MWLYR G  +++ SMYLALLL+VDV+DE + SQ VF+ +L+ AH  M LVV++  L
Sbjct:  924 CFRRIALTGFAVFIYPDSSAQVAIVLLLAIVFMVVSEFLSPFARPVEMWLYRTGHYVVFASMYLALLLRVDVSDERNQSQEVFSGVLVIAHAAMLLVVVLQGL 1026
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BLAST of mRNA_H-elongata_contig155517.3639.1 vs. uniprot
Match: D7FTU0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTU0_ECTSI)

HSP 1 Score: 110 bits (276), Expect = 5.790e-26
Identity = 59/99 (59.60%), Postives = 73/99 (73.74%), Query Frame = 1 
Query:    1 CGRRLVLAGLAVFIYPGSSAQIAIEALLSVMFYAVFETLSPFADSLDMWLYRFGALIIYLSMYLALLLKVDVADEESHSQTVFAWLLIAAHCGMALVVI 297
            C RR+ L G AVFIYP SSAQIAI  LL+V+F  V E LSPFA  ++MWLYR G  +++ SMYLALLL+VDV+DE   SQ VFA +++ AH  M LVV+
Sbjct:   59 CFRRIALTGFAVFIYPDSSAQIAIVLLLAVVFMVVSEILSPFARPVEMWLYRAGHYVVFASMYLALLLRVDVSDEGDQSQGVFAVVVVVAHACMVLVVL 157
[Close]
BLAST of mRNA_H-elongata_contig155517.3639.1 vs. uniprot
Match: A0A6H5L324_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L324_9PHAE)

HSP 1 Score: 111 bits (277), Expect = 2.970e-25
Identity = 57/103 (55.34%), Postives = 74/103 (71.84%), Query Frame = 1 
Query:    1 CGRRLVLAGLAVFIYPGSSAQIAIEALLSVMFYAVFETLSPFADSLDMWLYRFGALIIYLSMYLALLLKVDVADEESHSQTVFAWLLIAAHCGMALVVIIYAL 309
            C RR+ L G AVFIYP SSAQ+AI  LL+ +F  V E LSPFA  ++MWLYR G  +++ SMYLALLL+VDV+DE   SQ VF+ +++ AH  M LVV++  L
Sbjct:  911 CFRRIALTGFAVFIYPDSSAQVAIVLLLAAVFMVVSEILSPFARPVEMWLYRAGHYVVFASMYLALLLRVDVSDERDQSQEVFSGVIVMAHVAMFLVVVVQGL 1013
[Close]
BLAST of mRNA_H-elongata_contig155517.3639.1 vs. uniprot
Match: D7FTT9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTT9_ECTSI)

HSP 1 Score: 109 bits (273), Expect = 1.020e-24
Identity = 56/99 (56.57%), Postives = 72/99 (72.73%), Query Frame = 1 
Query:    1 CGRRLVLAGLAVFIYPGSSAQIAIEALLSVMFYAVFETLSPFADSLDMWLYRFGALIIYLSMYLALLLKVDVADEESHSQTVFAWLLIAAHCGMALVVI 297
            C RR+ L G AVFIYP SSAQ+AI  LL+ +F  V E LSPFA  ++MWLYR G  +++ SMYLALLL+VDV+DE   SQ VF+ +++ AH  M LVV+
Sbjct:  930 CFRRIALTGFAVFIYPDSSAQVAIVLLLAAVFMVVSEILSPFARPVEMWLYRAGHYVVFASMYLALLLRVDVSDERDQSQEVFSGVIVIAHVAMFLVVV 1028
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig155517.3639.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FPF7_ECTSI3.510e-3158.10Probable extracellular nuclease (ISS) n=1 Tax=Ecto... [more]
A0A6H5KHA3_9PHAE3.650e-3158.49Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JWI3_9PHAE2.220e-3061.90Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L4E3_9PHAE5.070e-2957.14Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FUB5_ECTSI3.610e-2856.60Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L0E1_9PHAE3.260e-2656.31Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FTU5_ECTSI4.610e-2656.31Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FTU0_ECTSI5.790e-2659.60Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L324_9PHAE2.970e-2555.34Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FTT9_ECTSI1.020e-2456.57Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig155517contigH-elongata_contig155517:941..1440 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score84.0
Seed ortholog evalue4.5e-14
Seed eggNOG ortholog2880.D7FPF7
EggNOG OGs2D43J@1,2STRI@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categorysignal anchor
Exons1
Model size500
Cds size300
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig155517.3639.1prot_H-elongata_contig155517.3639.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig155517 1031..1330 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929917.762422-UTR-H-elongata_contig155517:940..10301622929917.762422-UTR-H-elongata_contig155517:940..1030Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig155517 941..1030 +
1691679207.6820028-UTR-H-elongata_contig155517:940..10301691679207.6820028-UTR-H-elongata_contig155517:940..1030Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig155517 941..1030 +
1622929917.7913702-UTR-H-elongata_contig155517:1330..14401622929917.7913702-UTR-H-elongata_contig155517:1330..1440Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig155517 1331..1440 +
1691679207.7041547-UTR-H-elongata_contig155517:1330..14401691679207.7041547-UTR-H-elongata_contig155517:1330..1440Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig155517 1331..1440 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929917.7761898-CDS-H-elongata_contig155517:1030..13301622929917.7761898-CDS-H-elongata_contig155517:1030..1330Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig155517 1031..1330 +
1691679207.6941152-CDS-H-elongata_contig155517:1030..13301691679207.6941152-CDS-H-elongata_contig155517:1030..1330Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig155517 1031..1330 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig155517.3639.1

>prot_H-elongata_contig155517.3639.1 ID=prot_H-elongata_contig155517.3639.1|Name=mRNA_H-elongata_contig155517.3639.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=100bp
MFYAVFETLSPFADSLDMWLYRFGALIIYLSMYLALLLKVDVADEESHSQ
TVFAWLLIAAHCGMALVVIIYALFSAFPRVRSFKISCGKLLACRHGCCC*
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mRNA from alignment at H-elongata_contig155517:941..1440+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig155517.3639.1 ID=mRNA_H-elongata_contig155517.3639.1|Name=mRNA_H-elongata_contig155517.3639.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=500bp|location=Sequence derived from alignment at H-elongata_contig155517:941..1440+ (Himanthalia elongata Himel1 dioecious)
TGCGGTCGACGGCTTGTGCTTGCTGGCCTCGCCGTCTTCATCTACCCTGG
CAGTTCGGCGCAGATAGCAATCGAAGCGCTATTATCGGTAATGTTCTACG
CCGTGTTTGAGACTCTAAGTCCATTCGCCGACTCCTTGGACATGTGGCTG
TACCGTTTTGGGGCATTGATTATATATCTCAGCATGTACCTCGCGTTGCT
CTTGAAGGTAGACGTCGCGGACGAGGAGAGCCATAGCCAAACTGTTTTTG
CCTGGCTGTTGATCGCCGCTCACTGTGGTATGGCATTGGTCGTCATCATT
TACGCCCTTTTTTCCGCGTTTCCCCGTGTGAGATCATTCAAGATTAGTTG
CGGAAAGCTTTTGGCGTGTCGGCATGGGTGTTGTTGTTGAATTTGTTGAC
GTATGTGGGTACCAGTGAGGGGGTATTGGCAGACTCCGCCCTGCACGTGC
ATTGGCAGTTTCTCAAGGGCGTTGATGTCATTATTAGACACTAACCCCAG
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Coding sequence (CDS) from alignment at H-elongata_contig155517:941..1440+

>mRNA_H-elongata_contig155517.3639.1 ID=mRNA_H-elongata_contig155517.3639.1|Name=mRNA_H-elongata_contig155517.3639.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=600bp|location=Sequence derived from alignment at H-elongata_contig155517:941..1440+ (Himanthalia elongata Himel1 dioecious)
ATGTTCTACGCCGTGTTTGAGACTCTAAGTCCATTCGCCGACTCCTTGGA
CATGTGGCTGTACCGTTTTGGGGCATTGATTATATATCTCAGCATGTACC
TCGCGTTGCTCTTGAAGGTAGACGTCGCGGACGAGGAGAGCCATAGCCAA
ACTGTTTTTGCCTGGCTGTTGATCGCCGCTCACTGTGGTATGGCATTGGT
CGTCATCATTTACGCCCTTTTTTCCGCGTTTCCCCGTGTGAGATCATTCA
AGATTAGTTGCGGAAAGCTTTTGGCGTGTCGGCATGGGTGTTGTTGTTGA
ATGTTCTACGCCGTGTTTGAGACTCTAAGTCCATTCGCCGACTCCTTGGA
CATGTGGCTGTACCGTTTTGGGGCATTGATTATATATCTCAGCATGTACC
TCGCGTTGCTCTTGAAGGTAGACGTCGCGGACGAGGAGAGCCATAGCCAA
ACTGTTTTTGCCTGGCTGTTGATCGCCGCTCACTGTGGTATGGCATTGGT
CGTCATCATTTACGCCCTTTTTTCCGCGTTTCCCCGTGTGAGATCATTCA
AGATTAGTTGCGGAAAGCTTTTGGCGTGTCGGCATGGGTGTTGTTGTTGA
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