mRNA_H-elongata_contig155482.3635.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig155482.3635.1
Unique NamemRNA_H-elongata_contig155482.3635.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig155482.3635.1 vs. uniprot
Match: A0A6H5JA40_9PHAE (Zpr1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JA40_9PHAE)

HSP 1 Score: 106 bits (265), Expect = 3.120e-26
Identity = 50/68 (73.53%), Postives = 55/68 (80.88%), Query Frame = 1 
Query:   67 TIGEVVEAGNDDG---KFEGVDEIAGSLCMVCGGGGTTRLLTTKIPFFREIILSSFECDECHERNNEV 261
            TIGE V  G D G   +F G DEI GS+CMVCGG GTTR+LTTKIPFFRE+ILSSFECD+CH RNNEV
Sbjct:   28 TIGEAVGGGEDGGAGDEFAGADEITGSMCMVCGGDGTTRMLTTKIPFFREVILSSFECDDCHCRNNEV 95
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BLAST of mRNA_H-elongata_contig155482.3635.1 vs. uniprot
Match: D8LCC8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCC8_ECTSI)

HSP 1 Score: 95.9 bits (237), Expect = 3.670e-21
Identity = 46/72 (63.89%), Postives = 51/72 (70.83%), Query Frame = 1 
Query:   55 FYAPTIGEVVEAGNDDGKFEGVDE---IAGSLCMVCGGGGTTRLLTTKIPFFREIILSSFECDECHERNNEV 261
            +  PTIGE V  G D            I GS+CMVCGG GTTR+LTTKIPFFRE+ILSSFECD+CH RNNEV
Sbjct:   24 YRVPTIGEAVGGGEDXXXXXXXXXXXXITGSMCMVCGGDGTTRMLTTKIPFFREVILSSFECDDCHWRNNEV 95
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BLAST of mRNA_H-elongata_contig155482.3635.1 vs. uniprot
Match: A0A4D9CYY2_9STRA (Zpr1 domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CYY2_9STRA)

HSP 1 Score: 79.3 bits (194), Expect = 5.720e-17
Identity = 39/74 (52.70%), Postives = 50/74 (67.57%), Query Frame = 1 
Query:   43 ESLPFYAPTIGEVVEAGNDDGKFEGVDEIAGSLCMVCGGGGTTRLLTTKIPFFREIILSSFECDECHERNNEVR 264
            +S P     +G+ +  G+DD    G+ EI  SLCM CG  GTTR++ TKIPFFRE+I+SSFECD C   NNEV+
Sbjct:   39 QSTPLVLQDLGKTM--GDDD---NGIMEIPQSLCMACGESGTTRMILTKIPFFREVIVSSFECDSCGWTNNEVQ 107
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BLAST of mRNA_H-elongata_contig155482.3635.1 vs. uniprot
Match: A0A7S2GHT6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2GHT6_9STRA)

HSP 1 Score: 80.5 bits (197), Expect = 1.530e-16
Identity = 40/81 (49.38%), Postives = 51/81 (62.96%), Query Frame = 1 
Query:   19 DNFLDVAEESLPFYAPTIGEVVEAGNDDGKFEGVDEIAGSLCMVCGGGGTTRLLTTKIPFFREIILSSFECDECHERNNEV 261
            DNFL+V            G + E  +++ +F GV  I GSLCM+CG  G TR++TTKIP FREII+ SFECD C  +N EV
Sbjct:    6 DNFLNV------------GNLAEKLDEEDEFSGVSCIPGSLCMLCGESGVTRMMTTKIPHFREIIVCSFECDTCGHKNQEV 74
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BLAST of mRNA_H-elongata_contig155482.3635.1 vs. uniprot
Match: W7TY13_9STRA (Zinc finger protein zpr1 n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TY13_9STRA)

HSP 1 Score: 77.4 bits (189), Expect = 8.370e-16
Identity = 36/58 (62.07%), Postives = 43/58 (74.14%), Query Frame = 1 
Query:   91 GNDDGKFEGVDEIAGSLCMVCGGGGTTRLLTTKIPFFREIILSSFECDECHERNNEVR 264
            G+DD    G+ EI  SLCM CG  GTTR++ TKIPFFRE+I+SSFECD C   NNEV+
Sbjct:   53 GDDD---NGIMEIPQSLCMACGESGTTRMILTKIPFFREVIVSSFECDSCGWTNNEVQ 107
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BLAST of mRNA_H-elongata_contig155482.3635.1 vs. uniprot
Match: A0A7S4EAK0_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4EAK0_9STRA)

HSP 1 Score: 77.4 bits (189), Expect = 1.040e-14
Identity = 35/68 (51.47%), Postives = 43/68 (63.24%), Query Frame = 1 
Query:   61 APTIGEVVEAGNDDGKFEGVDEIAGSLCMVCGGGGTTRLLTTKIPFFREIILSSFECDECHERNNEVR 264
            A TIGE  E    D   + +  +  SLCM CGG G TR++ TKIP FRE++LSSF C  C ERN EV+
Sbjct:    6 AKTIGESAEQAEVDLTLDNISIVPDSLCMACGGSGETRIMLTKIPLFREVLLSSFACPHCGERNTEVQ 73
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BLAST of mRNA_H-elongata_contig155482.3635.1 vs. uniprot
Match: A0A7S4A1G6_9STRA (Hypothetical protein (Fragment) n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4A1G6_9STRA)

HSP 1 Score: 77.4 bits (189), Expect = 1.160e-14
Identity = 35/68 (51.47%), Postives = 43/68 (63.24%), Query Frame = 1 
Query:   61 APTIGEVVEAGNDDGKFEGVDEIAGSLCMVCGGGGTTRLLTTKIPFFREIILSSFECDECHERNNEVR 264
            A TIGE  E    D   + +  +  SLCM CGG G TR++ TKIP FRE++LSSF C  C ERN EV+
Sbjct:    6 AKTIGESAEQAEVDLTLDNISIVPDSLCMACGGSGETRIMLTKIPLFREVLLSSFACPHCGERNTEVQ 73
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BLAST of mRNA_H-elongata_contig155482.3635.1 vs. uniprot
Match: A0A7S2RY09_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RY09_9STRA)

HSP 1 Score: 77.4 bits (189), Expect = 1.180e-14
Identity = 36/65 (55.38%), Postives = 44/65 (67.69%), Query Frame = 1 
Query:   67 TIGEVVEAGNDDGKFEGVDEIAGSLCMVCGGGGTTRLLTTKIPFFREIILSSFECDECHERNNEV 261
            T+GE+ EA + + +  G+  I  SLCM CG  G TR+L TKIP FREII+ SFECD C   NNEV
Sbjct:    9 TVGEIAEAADKEEEETGLSIIPDSLCMRCGATGVTRMLNTKIPHFREIIICSFECDSCGWTNNEV 73
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BLAST of mRNA_H-elongata_contig155482.3635.1 vs. uniprot
Match: A0A446MYR1_TRITD (Zpr1 domain-containing protein n=1 Tax=Triticum turgidum subsp. durum TaxID=4567 RepID=A0A446MYR1_TRITD)

HSP 1 Score: 72.4 bits (176), Expect = 1.310e-14
Identity = 32/65 (49.23%), Postives = 41/65 (63.08%), Query Frame = 1 
Query:   70 IGEVVEAGNDDGKFEGVDEIAGSLCMVCGGGGTTRLLTTKIPFFREIILSSFECDECHERNNEVR 264
            I    E+  DDG  +    +  SLCM CG  GTTR+L T IP FRE++L +FEC  C ERNNE++
Sbjct:   14 IRSAAESAGDDGARDAPLHVVESLCMRCGENGTTRILLTLIPHFREVVLMAFECPHCSERNNEIQ 78
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BLAST of mRNA_H-elongata_contig155482.3635.1 vs. uniprot
Match: F0YG25_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YG25_AURAN)

HSP 1 Score: 76.3 bits (186), Expect = 2.970e-14
Identity = 35/60 (58.33%), Postives = 42/60 (70.00%), Query Frame = 1 
Query:   85 EAGNDDGKFEGVDEIAGSLCMVCGGGGTTRLLTTKIPFFREIILSSFECDECHERNNEVR 264
            E+   D   + ++ I  SLCM CGG G TRL+ TKIP FREIILSSF CD+C ERN EV+
Sbjct:   39 ESAEIDLALDSMNIIKDSLCMACGGSGETRLMLTKIPLFREIILSSFHCDDCGERNTEVQ 98
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig155482.3635.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JA40_9PHAE3.120e-2673.53Zpr1 domain-containing protein n=1 Tax=Ectocarpus ... [more]
D8LCC8_ECTSI3.670e-2163.89Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A4D9CYY2_9STRA5.720e-1752.70Zpr1 domain-containing protein n=1 Tax=Nannochloro... [more]
A0A7S2GHT6_9STRA1.530e-1649.38Hypothetical protein (Fragment) n=1 Tax=Dictyocha ... [more]
W7TY13_9STRA8.370e-1662.07Zinc finger protein zpr1 n=1 Tax=Nannochloropsis g... [more]
A0A7S4EAK0_9STRA1.040e-1451.47Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A7S4A1G6_9STRA1.160e-1451.47Hypothetical protein (Fragment) n=2 Tax=Pelagomona... [more]
A0A7S2RY09_9STRA1.180e-1455.38Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A446MYR1_TRITD1.310e-1449.23Zpr1 domain-containing protein n=1 Tax=Triticum tu... [more]
F0YG25_AURAN2.970e-1458.33Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig155482contigH-elongata_contig155482:454..720 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score95.9
Seed ortholog evalue1e-17
Seed eggNOG ortholog2880.D8LCC8
Preferred nameZPR1
KEGG koko:K06874,ko:K09025
KEGG Pathwayko03320,map03320
GOsGO:0000082,GO:0000083,GO:0000086,GO:0000226,GO:0000278,GO:0001701,GO:0001763,GO:0001824,GO:0001832,GO:0001833,GO:0001834,GO:0002009,GO:0002181,GO:0003674,GO:0005102,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0005737,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006355,GO:0006401,GO:0006412,GO:0006518,GO:0006725,GO:0006807,GO:0006915,GO:0006950,GO:0006996,GO:0006997,GO:0007010,GO:0007017,GO:0007049,GO:0007154,GO:0007165,GO:0007275,GO:0007399,GO:0007417,GO:0007424,GO:0007430,GO:0008150,GO:0008152,GO:0008219,GO:0008270,GO:0008283,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009267,GO:0009605,GO:0009653,GO:0009719,GO:0009743,GO:0009746,GO:0009749,GO:0009790,GO:0009792,GO:0009888,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0009991,GO:0010033,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010628,GO:0010941,GO:0012501,GO:0015030,GO:0016043,GO:0016070,GO:0016604,GO:0019219,GO:0019222,GO:0019439,GO:0019538,GO:0019899,GO:0019900,GO:0019901,GO:0021510,GO:0022008,GO:0022402,GO:0023052,GO:0030030,GO:0030154,GO:0030182,GO:0030424,GO:0030426,GO:0030427,GO:0030575,GO:0030576,GO:0030971,GO:0031175,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031369,GO:0031641,GO:0031667,GO:0031668,GO:0031669,GO:0031974,GO:0031981,GO:0032386,GO:0032388,GO:0032501,GO:0032502,GO:0032797,GO:0032879,GO:0032880,GO:0032991,GO:0033120,GO:0033157,GO:0033267,GO:0033554,GO:0034284,GO:0034641,GO:0034645,GO:0034655,GO:0035148,GO:0035149,GO:0035152,GO:0035239,GO:0035295,GO:0036477,GO:0040007,GO:0040008,GO:0042023,GO:0042221,GO:0042306,GO:0042307,GO:0042594,GO:0042981,GO:0042995,GO:0043005,GO:0043009,GO:0043025,GO:0043043,GO:0043066,GO:0043067,GO:0043069,GO:0043167,GO:0043169,GO:0043170,GO:0043204,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043484,GO:0043523,GO:0043524,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044267,GO:0044270,GO:0044271,GO:0044297,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044451,GO:0044463,GO:0044464,GO:0044770,GO:0044772,GO:0044786,GO:0044839,GO:0044843,GO:0045893,GO:0045927,GO:0045935,GO:0046483,GO:0046700,GO:0046822,GO:0046824,GO:0046872,GO:0046914,GO:0048468,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048589,GO:0048646,GO:0048666,GO:0048699,GO:0048729,GO:0048731,GO:0048754,GO:0048856,GO:0048869,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051049,GO:0051050,GO:0051171,GO:0051173,GO:0051222,GO:0051223,GO:0051239,GO:0051252,GO:0051254,GO:0051716,GO:0051960,GO:0060255,GO:0060341,GO:0060429,GO:0060446,GO:0060541,GO:0060548,GO:0060562,GO:0061138,GO:0061564,GO:0061770,GO:0065007,GO:0065008,GO:0070013,GO:0070201,GO:0070848,GO:0070849,GO:0070887,GO:0071310,GO:0071363,GO:0071364,GO:0071495,GO:0071496,GO:0071704,GO:0071840,GO:0071931,GO:0080090,GO:0090087,GO:0090304,GO:0090316,GO:0097458,GO:0097504,GO:0120025,GO:0120036,GO:0120038,GO:0150034,GO:1900180,GO:1900182,GO:1901214,GO:1901215,GO:1901360,GO:1901361,GO:1901564,GO:1901566,GO:1901575,GO:1901576,GO:1901700,GO:1902680,GO:1902742,GO:1903047,GO:1903506,GO:1903508,GO:1903827,GO:1903829,GO:1904589,GO:1904591,GO:1904951,GO:1990261,GO:1990782,GO:2000026,GO:2000112,GO:2000671,GO:2000672,GO:2001141
EggNOG free text desc.pre-mRNA catabolic process
EggNOG OGsCOG1779@1,KOG2703@2759
COG Functional cat.Z
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00536
Hectar predicted targeting categoryother localisation
Exons1
Model size267
Cds size267
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929917.095677-CDS-H-elongata_contig155482:453..7201622929917.095677-CDS-H-elongata_contig155482:453..720Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig155482 454..720 -
1691679207.5735216-CDS-H-elongata_contig155482:453..7201691679207.5735216-CDS-H-elongata_contig155482:453..720Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig155482 454..720 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig155482.3635.1prot_H-elongata_contig155482.3635.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig155482 454..720 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig155482.3635.1

>prot_H-elongata_contig155482.3635.1 ID=prot_H-elongata_contig155482.3635.1|Name=mRNA_H-elongata_contig155482.3635.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=89bp
MSTTGYDNFLDVAEESLPFYAPTIGEVVEAGNDDGKFEGVDEIAGSLCMV
CGGGGTTRLLTTKIPFFREIILSSFECDECHERNNEVR*
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mRNA from alignment at H-elongata_contig155482:454..720-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig155482.3635.1 ID=mRNA_H-elongata_contig155482.3635.1|Name=mRNA_H-elongata_contig155482.3635.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=267bp|location=Sequence derived from alignment at H-elongata_contig155482:454..720- (Himanthalia elongata Himel1 dioecious)
ATGTCAACAACAGGCTATGATAATTTTCTTGACGTGGCAGAAGAGAGCTT
ACCATTTTATGCTCCCACCATTGGGGAGGTAGTGGAAGCCGGAAATGATG
ACGGAAAATTTGAAGGTGTCGATGAGATCGCAGGGTCCTTGTGCATGGTT
TGCGGCGGAGGGGGTACAACCAGGCTCTTGACAACCAAGATTCCGTTCTT
TCGAGAAATAATCCTGAGCTCCTTCGAGTGCGATGAGTGCCACGAGAGGA
ACAACGAGGTGAGGTAG
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Coding sequence (CDS) from alignment at H-elongata_contig155482:454..720-

>mRNA_H-elongata_contig155482.3635.1 ID=mRNA_H-elongata_contig155482.3635.1|Name=mRNA_H-elongata_contig155482.3635.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=534bp|location=Sequence derived from alignment at H-elongata_contig155482:454..720- (Himanthalia elongata Himel1 dioecious)
ATGTCAACAACAGGCTATGATAATTTTCTTGACGTGGCAGAAGAGAGCTT
ACCATTTTATGCTCCCACCATTGGGGAGGTAGTGGAAGCCGGAAATGATG
ACGGAAAATTTGAAGGTGTCGATGAGATCGCAGGGTCCTTGTGCATGGTT
TGCGGCGGAGGGGGTACAACCAGGCTCTTGACAACCAAGATTCCGTTCTT
TCGAGAAATAATCCTGAGCTCCTTCGAGTGCGATGAGTGCCACGAGAGGA
ACAACGAGGTGAGGTAGATGTCAACAACAGGCTATGATAATTTTCTTGAC
GTGGCAGAAGAGAGCTTACCATTTTATGCTCCCACCATTGGGGAGGTAGT
GGAAGCCGGAAATGATGACGGAAAATTTGAAGGTGTCGATGAGATCGCAG
GGTCCTTGTGCATGGTTTGCGGCGGAGGGGGTACAACCAGGCTCTTGACA
ACCAAGATTCCGTTCTTTCGAGAAATAATCCTGAGCTCCTTCGAGTGCGA
TGAGTGCCACGAGAGGAACAACGAGGTGAGGTAG
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