mRNA_H-elongata_contig15547.3633.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig15547.3633.1
Unique NamemRNA_H-elongata_contig15547.3633.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig15547.3633.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig15547contigH-elongata_contig15547:6297..7393 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size1097
Cds size618
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929916.930186-UTR-H-elongata_contig15547:6296..67751622929916.930186-UTR-H-elongata_contig15547:6296..6775Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig15547 6297..6775 -
1691679207.5125268-UTR-H-elongata_contig15547:6296..67751691679207.5125268-UTR-H-elongata_contig15547:6296..6775Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig15547 6297..6775 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929916.9501796-CDS-H-elongata_contig15547:6775..73931622929916.9501796-CDS-H-elongata_contig15547:6775..7393Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15547 6776..7393 -
1691679207.5205848-CDS-H-elongata_contig15547:6775..73931691679207.5205848-CDS-H-elongata_contig15547:6775..7393Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15547 6776..7393 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig15547.3633.1prot_H-elongata_contig15547.3633.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig15547 6776..7393 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig15547.3633.1

>prot_H-elongata_contig15547.3633.1 ID=prot_H-elongata_contig15547.3633.1|Name=mRNA_H-elongata_contig15547.3633.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=206bp
MERSTNGSYSGRRRNVVNPGRIDAILGHNRQGLRLNVGLAMHQRSFGLAS
SRTKTTERHPQSSRGGSGGGADLSEAVSQSGSQGGCSQGQHSLSQGLSFS
QGIGSQGAHENQSETVGFDTSQPSPGMLEPCTFGNNGGVVGHPNTGRNSR
PTRPRWNGRKRVTSRPASHGHQQWEKKHIVFKRYSRCQEAEYQHETLATT
ADTGQ*
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mRNA from alignment at H-elongata_contig15547:6297..7393-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig15547.3633.1 ID=mRNA_H-elongata_contig15547.3633.1|Name=mRNA_H-elongata_contig15547.3633.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1097bp|location=Sequence derived from alignment at H-elongata_contig15547:6297..7393- (Himanthalia elongata Himel1 dioecious)
ATGGAACGCTCCACGAATGGATCATATTCAGGGAGAAGACGGAATGTGGT
CAACCCTGGACGCATTGACGCAATTCTTGGGCACAACAGGCAAGGCTTAC
GCCTAAATGTCGGCCTTGCGATGCACCAGCGATCGTTCGGTCTAGCTTCA
AGCAGAACCAAAACAACTGAAAGGCACCCGCAAAGCTCTAGAGGGGGAAG
TGGAGGTGGTGCAGATTTATCGGAGGCCGTTTCGCAGTCTGGCAGCCAGG
GAGGTTGCAGCCAGGGCCAGCATAGCCTCAGCCAGGGCCTTTCCTTTAGC
CAAGGCATCGGAAGCCAAGGCGCACACGAGAATCAGAGCGAAACGGTTGG
GTTCGACACGTCACAGCCCAGCCCGGGCATGCTCGAACCTTGTACCTTCG
GCAACAACGGTGGGGTAGTTGGACACCCCAACACTGGAAGGAATTCTAGG
CCAACTAGACCGCGTTGGAATGGACGGAAGAGAGTTACGAGTAGGCCAGC
CTCTCACGGCCATCAACAGTGGGAGAAGAAACACATCGTCTTCAAGAGGT
ATTCCCGATGCCAAGAGGCCGAATACCAGCACGAAACGCTCGCGACCACA
GCCGACACAGGGCAGTAAGAGATCGTACCCAAGTCGTTCGGGTGGAAAGG
GGGACGCAGACACTCGCGGCAAGTTATGTCGGGGACAGGGGCCATGTAAA
CATTCGAGAAACTCTTGTGGGAGCAGTTCCGCATTCAGGTCATGTCCAAG
CTATCCGACCTTCGGACACTAGTTGAGGCAACTCGCGACGCGGTAGGTGA
CCACGCACAGGAGAAGAAGCAGAGGTCAGCGGAGTCACCGAGCTAAGGAC
GGGAATGCAGGGCACTCATAAGCTAGCTCAACCAATTGGACGGACATATT
CCAAGGCGGTCGAGCTCCTTGAAACGACCATTCTAGAGACACTAGGGTCT
TTGGAGAATCGCCTGAGCTCTGAGGAAGAGAAAGTGGAGGTAGCCTCCGC
GGAGACATCCGCTAGTGCAGCGTCTTTCGCCCGAGCTTTAGCAACGAGAG
AATATGCGAAAGTTCCAGCGCGTTCCATGAATCCAAAACGAGCCGAG
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Coding sequence (CDS) from alignment at H-elongata_contig15547:6297..7393-

>mRNA_H-elongata_contig15547.3633.1 ID=mRNA_H-elongata_contig15547.3633.1|Name=mRNA_H-elongata_contig15547.3633.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1236bp|location=Sequence derived from alignment at H-elongata_contig15547:6297..7393- (Himanthalia elongata Himel1 dioecious)
ATGGAACGCTCCACGAATGGATCATATTCAGGGAGAAGACGGAATGTGGT
CAACCCTGGACGCATTGACGCAATTCTTGGGCACAACAGGCAAGGCTTAC
GCCTAAATGTCGGCCTTGCGATGCACCAGCGATCGTTCGGTCTAGCTTCA
AGCAGAACCAAAACAACTGAAAGGCACCCGCAAAGCTCTAGAGGGGGAAG
TGGAGGTGGTGCAGATTTATCGGAGGCCGTTTCGCAGTCTGGCAGCCAGG
GAGGTTGCAGCCAGGGCCAGCATAGCCTCAGCCAGGGCCTTTCCTTTAGC
CAAGGCATCGGAAGCCAAGGCGCACACGAGAATCAGAGCGAAACGGTTGG
GTTCGACACGTCACAGCCCAGCCCGGGCATGCTCGAACCTTGTACCTTCG
GCAACAACGGTGGGGTAGTTGGACACCCCAACACTGGAAGGAATTCTAGG
CCAACTAGACCGCGTTGGAATGGACGGAAGAGAGTTACGAGTAGGCCAGC
CTCTCACGGCCATCAACAGTGGGAGAAGAAACACATCGTCTTCAAGAGGT
ATTCCCGATGCCAAGAGGCCGAATACCAGCACGAAACGCTCGCGACCACA
GCCGACACAGGGCAGTAAATGGAACGCTCCACGAATGGATCATATTCAGG
GAGAAGACGGAATGTGGTCAACCCTGGACGCATTGACGCAATTCTTGGGC
ACAACAGGCAAGGCTTACGCCTAAATGTCGGCCTTGCGATGCACCAGCGA
TCGTTCGGTCTAGCTTCAAGCAGAACCAAAACAACTGAAAGGCACCCGCA
AAGCTCTAGAGGGGGAAGTGGAGGTGGTGCAGATTTATCGGAGGCCGTTT
CGCAGTCTGGCAGCCAGGGAGGTTGCAGCCAGGGCCAGCATAGCCTCAGC
CAGGGCCTTTCCTTTAGCCAAGGCATCGGAAGCCAAGGCGCACACGAGAA
TCAGAGCGAAACGGTTGGGTTCGACACGTCACAGCCCAGCCCGGGCATGC
TCGAACCTTGTACCTTCGGCAACAACGGTGGGGTAGTTGGACACCCCAAC
ACTGGAAGGAATTCTAGGCCAACTAGACCGCGTTGGAATGGACGGAAGAG
AGTTACGAGTAGGCCAGCCTCTCACGGCCATCAACAGTGGGAGAAGAAAC
ACATCGTCTTCAAGAGGTATTCCCGATGCCAAGAGGCCGAATACCAGCAC
GAAACGCTCGCGACCACAGCCGACACAGGGCAGTAA
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