mRNA_H-elongata_contig15546.3631.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig15546.3631.1
Unique NamemRNA_H-elongata_contig15546.3631.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig15546.3631.1 vs. uniprot
Match: D7FWA1_ECTSI (PPIase cyclophilin-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWA1_ECTSI)

HSP 1 Score: 285 bits (730), Expect = 1.500e-85
Identity = 135/162 (83.33%), Postives = 152/162 (93.83%), Query Frame = 2 
Query:  479 AGRLVFKLYTEQVPLTADNFRCLCTGEKGEGRTTGKPLHYKGIPFHRIIPGFMCQGGDFERRNGTGGESIYGGKFKDEAAGLKLKHDKQHMLSMANTGEKNTNGSQFFITTQRAPHLNGKHVVFGELESGAETLMKMSQVDTDRKDAPIPLQRVVIDDCGEL 964
            AGR+VF+LYTE+VPLTA+NFRCLCTGEKGEGRTTG+ LHYKG+PFHR+IPGFMCQGGDFERRNGTGGESIYGGKFKDE AGLKLKH+K+H+LSMAN G KN+NGSQFFITT  A HL+G HVVFGELESGA+TL KMS+V+TD+KDAPI LQRVVI+DCGEL
Sbjct:   20 AGRMVFELYTEKVPLTAENFRCLCTGEKGEGRTTGRMLHYKGVPFHRVIPGFMCQGGDFERRNGTGGESIYGGKFKDEPAGLKLKHNKKHLLSMANAG-KNSNGSQFFITTDPASHLDGLHVVFGELESGADTLTKMSEVETDKKDAPISLQRVVIEDCGEL 180
[Close]
BLAST of mRNA_H-elongata_contig15546.3631.1 vs. uniprot
Match: A0A6H5L3B6_9PHAE (PPIase cyclophilin-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3B6_9PHAE)

HSP 1 Score: 286 bits (733), Expect = 2.000e-84
Identity = 135/162 (83.33%), Postives = 152/162 (93.83%), Query Frame = 2 
Query:  479 AGRLVFKLYTEQVPLTADNFRCLCTGEKGEGRTTGKPLHYKGIPFHRIIPGFMCQGGDFERRNGTGGESIYGGKFKDEAAGLKLKHDKQHMLSMANTGEKNTNGSQFFITTQRAPHLNGKHVVFGELESGAETLMKMSQVDTDRKDAPIPLQRVVIDDCGEL 964
            AGR+VFKLYTE VPLTA+NFRCLCTGEKGEGRTTG+ LHYKG+PFHR+IPGFMCQGGDFERRNGTGGESIYGGKFKDE AGLKLKH+K+H+LSMAN G KN+NGSQFFITT  A HL+G HVVFGELESGA+TL+KMS+V+TD+KDAPI LQRV+I+DCGEL
Sbjct:   44 AGRMVFKLYTETVPLTAENFRCLCTGEKGEGRTTGRMLHYKGVPFHRVIPGFMCQGGDFERRNGTGGESIYGGKFKDEPAGLKLKHNKKHLLSMANAG-KNSNGSQFFITTHPASHLDGLHVVFGELESGADTLVKMSEVETDKKDAPISLQRVIIEDCGEL 204
[Close]
BLAST of mRNA_H-elongata_contig15546.3631.1 vs. uniprot
Match: A0A6V1RCR2_HETAK (Peptidyl-prolyl cis-trans isomerase n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1RCR2_HETAK)

HSP 1 Score: 217 bits (553), Expect = 9.960e-63
Identity = 106/174 (60.92%), Postives = 135/174 (77.59%), Query Frame = 2 
Query:  479 AGRLVFKLYTEQVPLTADNFRCLCTGEKGEGRTTGKPLHYKGIPFHRIIPGFMCQGGDFERRNGTGGESIYGGKFKDEAAGLKLKHDKQHMLSMANTGEKNTNGSQFFITTQRAPHLNGKHVVFGELESGAETLMKMSQVDTDRKDAPIPLQRVVIDDCGELSM--LSEESGEE 994
            AGR+VF+LY + VP TA+NFR LCTGEKG G TT KPLHYKG+PFHRII GFM QGGDF   NGTGGESIYGGKFKDEA    +KH +  +LSMAN G K++NG+QFF+T    PHL+GKHVVFGE+ +G + + +M +V+ DRK+ P+  QRV+I DCGEL +  L+++ G++
Sbjct:   27 AGRIVFELYNDLVPKTAENFRALCTGEKGIGPTTRKPLHYKGVPFHRIIGGFMAQGGDFSNNNGTGGESIYGGKFKDEA--FTVKHGRPGLLSMANAG-KDSNGAQFFVTFVPTPHLDGKHVVFGEVVAGMDIVRRMEEVECDRKNCPVAAQRVLIADCGELDLAQLAKKDGKK 197
[Close]
BLAST of mRNA_H-elongata_contig15546.3631.1 vs. uniprot
Match: G4ZG38_PHYSP (Peptidyl-prolyl cis-trans isomerase (Fragment) n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G4ZG38_PHYSP)

HSP 1 Score: 212 bits (539), Expect = 7.050e-62
Identity = 103/162 (63.58%), Postives = 126/162 (77.78%), Query Frame = 2 
Query:  479 AGRLVFKLYTEQVPLTADNFRCLCTGEKGEGRTTGKPLHYKGIPFHRIIPGFMCQGGDFERRNGTGGESIYGGKFKDEAAGLKLKHDKQHMLSMANTGEKNTNGSQFFITTQRAPHLNGKHVVFGELESGAETLMKMSQVDTDRKDAPIPLQRVVIDDCGEL 964
            AGR+VF+LY   +P T +NFR LCTGE+G GR+TGKPLHYK +PFHR+I GFM QGGDF RRNGTGGESIYG KF DE+   + +H K  +LSMAN G +NTNGSQFFITT   PHL+GKHVVFGE+ESG + + ++  V+T   D P P+Q VVI+DCGE+
Sbjct:   15 AGRIVFRLYPG-LPKTTENFRSLCTGERGLGRSTGKPLHYKKVPFHRVIKGFMLQGGDFSRRNGTGGESIYGDKFADES--FRYRHSKAGLLSMANAG-RNTNGSQFFITTVPTPHLDGKHVVFGEVESGMDVVRRVENVETVANDKPAPMQAVVIEDCGEI 172
[Close]
BLAST of mRNA_H-elongata_contig15546.3631.1 vs. uniprot
Match: A0A8K1CG83_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CG83_PYTOL)

HSP 1 Score: 216 bits (551), Expect = 8.960e-62
Identity = 106/163 (65.03%), Postives = 127/163 (77.91%), Query Frame = 2 
Query:  476 AAGRLVFKLYTEQVPLTADNFRCLCTGEKGEGRTTGKPLHYKGIPFHRIIPGFMCQGGDFERRNGTGGESIYGGKFKDEAAGLKLKHDKQHMLSMANTGEKNTNGSQFFITTQRAPHLNGKHVVFGELESGAETLMKMSQVDTDRKDAPIPLQRVVIDDCGEL 964
            +AGR+VF+LY + VPLT DNFR LCTGE G G+TTGKPLHYKG+PFHRII GFM QGGDF  R+GTGGESIYG +FKDE+   + +H K  +LSMAN G  NTNGSQFFITT   PHL+GKHVVFGE+E G + + KM  V+T  KD P+ +Q V I+DCGE+
Sbjct:   17 SAGRIVFRLY-DGVPLTTDNFRALCTGEAGVGKTTGKPLHYKGVPFHRIIKGFMLQGGDFSNRDGTGGESIYGSRFKDES--FRYRHTKPGLLSMANAGP-NTNGSQFFITTVPTPHLDGKHVVFGEVEKGMDVVRKMESVETGVKDRPVAMQTVRIEDCGEV 175
[Close]
BLAST of mRNA_H-elongata_contig15546.3631.1 vs. uniprot
Match: A0A2P4Y6R2_9STRA (Peptidyl-prolyl cis-trans isomerase n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4Y6R2_9STRA)

HSP 1 Score: 214 bits (546), Expect = 1.270e-61
Identity = 108/167 (64.67%), Postives = 127/167 (76.05%), Query Frame = 2 
Query:  479 AGRLVFKLYTEQVPLTADNFRCLCTGEKGEGRTTGKPLHYKGIPFHRIIPGFMCQGGDFERRNGTGGESIYGGKFKDEAAGLKLKHDKQHMLSMANTGEKNTNGSQFFITTQRAPHLNGKHVVFGELESGAETLMKMSQVDTDRKDAPIPLQRVVIDDCGELSMLSE 979
            AGR+VF+LY   +P TA+NFR LCTGE+G GRTTG+PLHYK +PFHRII GFM QGGDF  RNGTGGESIYG KF DE+   K +H K  +LSMAN G KNTNGSQFFITT   PHL+GKHVVFGE+ SG + + KM  V+T   D P P+Q VVI +CGEL  +S+
Sbjct:   16 AGRIVFQLYPG-LPKTAENFRSLCTGERGLGRTTGQPLHYKKVPFHRIIKGFMLQGGDFSNRNGTGGESIYGAKFADES--FKYRHTKAGLLSMANAG-KNTNGSQFFITTVATPHLDGKHVVFGEVVSGMDVVRKMENVETVANDKPAPMQAVVIQNCGELEDVSD 178
[Close]
BLAST of mRNA_H-elongata_contig15546.3631.1 vs. uniprot
Match: A0A3R7HCE3_9STRA (Peptidyl-prolyl cis-trans isomerase n=2 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7HCE3_9STRA)

HSP 1 Score: 213 bits (541), Expect = 2.840e-61
Identity = 107/169 (63.31%), Postives = 128/169 (75.74%), Query Frame = 2 
Query:  479 AGRLVFKLYTEQVPLTADNFRCLCTGEKGEGRTTGKPLHYKGIPFHRIIPGFMCQGGDFERRNGTGGESIYGGKFKDEAAGLKLKHDKQHMLSMANTGEKNTNGSQFFITTQRAPHLNGKHVVFGELESGAETLMKMSQVDTDRKDAPIPLQRVVIDDCGELSMLSEES 985
            AGR+VF+LY   +P T +NFR LCTGE+G GR+TGKPLHYK +PFHR I GFM QGGDF R NGTGGESIYG KF DE+   K +H+K  +LSMAN G KNTNGSQFFITT   PHL+GKHVVFGE+ SG + + KM  V+T   D P P+Q VVI+DCGE+   S++S
Sbjct:   18 AGRIVFRLYPG-LPKTTENFRSLCTGERGLGRSTGKPLHYKKVPFHRTIKGFMLQGGDFSRYNGTGGESIYGEKFADES--FKYRHNKAGLLSMANAG-KNTNGSQFFITTVPTPHLDGKHVVFGEVVSGMDVVRKMENVETVANDKPAPMQAVVIEDCGEVGGESDDS 182
[Close]
BLAST of mRNA_H-elongata_contig15546.3631.1 vs. uniprot
Match: A0A3F2RQ90_9STRA (Peptidyl-prolyl cis-trans isomerase n=1 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2RQ90_9STRA)

HSP 1 Score: 213 bits (541), Expect = 7.930e-61
Identity = 107/169 (63.31%), Postives = 128/169 (75.74%), Query Frame = 2 
Query:  479 AGRLVFKLYTEQVPLTADNFRCLCTGEKGEGRTTGKPLHYKGIPFHRIIPGFMCQGGDFERRNGTGGESIYGGKFKDEAAGLKLKHDKQHMLSMANTGEKNTNGSQFFITTQRAPHLNGKHVVFGELESGAETLMKMSQVDTDRKDAPIPLQRVVIDDCGELSMLSEES 985
            AGR+VF+LY   +P T +NFR LCTGE+G GR+TGKPLHYK +PFHR I GFM QGGDF R NGTGGESIYG KF DE+   K +H+K  +LSMAN G KNTNGSQFFITT   PHL+GKHVVFGE+ SG + + KM  V+T   D P P+Q VVI+DCGE+   S++S
Sbjct:   18 AGRIVFRLYPG-LPKTTENFRSLCTGERGLGRSTGKPLHYKKVPFHRTIKGFMLQGGDFSRYNGTGGESIYGEKFADES--FKYRHNKAGLLSMANAG-KNTNGSQFFITTVPTPHLDGKHVVFGEVVSGMDVVRKMENVETVANDKPAPMQAVVIEDCGEVGGESDDS 182
[Close]
BLAST of mRNA_H-elongata_contig15546.3631.1 vs. uniprot
Match: A0A662XMY0_9STRA (Peptidyl-prolyl cis-trans isomerase n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XMY0_9STRA)

HSP 1 Score: 213 bits (542), Expect = 1.070e-60
Identity = 105/169 (62.13%), Postives = 129/169 (76.33%), Query Frame = 2 
Query:  479 AGRLVFKLYTEQVPLTADNFRCLCTGEKGEGRTTGKPLHYKGIPFHRIIPGFMCQGGDFERRNGTGGESIYGGKFKDEAAGLKLKHDKQHMLSMANTGEKNTNGSQFFITTQRAPHLNGKHVVFGELESGAETLMKMSQVDTDRKDAPIPLQRVVIDDCGELSMLSEES 985
            AGR+VFKLY + +P T +NFR LCTGE+G GR TGKPLHYK +PFHRII GFM QGGDF RR+GTGGESIYG +F DE+   + +H K  +LSMAN G KNTNGSQFFITT   PHL+GKHVVFGE+ SG E + KM  V+T   + P P+Q VVI+DCGE+  + +++
Sbjct:   20 AGRVVFKLYAD-LPKTTENFRSLCTGERGLGRATGKPLHYKKVPFHRIIKGFMLQGGDFSRRDGTGGESIYGERFPDES--FRYRHTKPGLLSMANAG-KNTNGSQFFITTVATPHLDGKHVVFGEVISGMEVVRKMENVETVANNKPAPVQAVVIEDCGEVDSVDDDA 184
[Close]
BLAST of mRNA_H-elongata_contig15546.3631.1 vs. uniprot
Match: A0A8J5J6B2_9STRA (PPIase cyclophilin-type domain-containing protein n=1 Tax=Phytophthora aleatoria TaxID=2496075 RepID=A0A8J5J6B2_9STRA)

HSP 1 Score: 207 bits (528), Expect = 9.510e-59
Identity = 104/168 (61.90%), Postives = 126/168 (75.00%), Query Frame = 2 
Query:  476 AAGRLVFKLYTEQVPLTADNFRCLCTGEKGEGRTTGKPLHYKGIPFHRIIPGFMCQGGDFERRNGTGGESIYGGKFKDEAAGLKLKHDKQHMLSMANTGEKNTNGSQFFITTQRAPHLNGKHVVFGELESGAETLMKMSQVDTDRKDAPIPLQRVVIDDCGELSMLSE 979
            +AGR+V +LY + VP T +NFR LCTGE+G GRTTGKPLHY+ +PFHRII GFM QGGDF  R+GTGGESIYG KF DE  G + +H K  +LSMAN G KNTNGSQFFITT   PHL+GKHVVFGE+  G + + KM  V+T   + P P+Q VVI++CGE+   SE
Sbjct:   17 SAGRIVIRLYPD-VPKTTENFRSLCTGERGLGRTTGKPLHYRKVPFHRIIKGFMLQGGDFSNRDGTGGESIYGSKFADE--GFRYRHTKAGLLSMANAG-KNTNGSQFFITTVPTPHLDGKHVVFGEVIRGMDVVRKMENVETVVNNKPAPMQAVVIEECGEVDEESE 180
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig15546.3631.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FWA1_ECTSI1.500e-8583.33PPIase cyclophilin-type domain-containing protein ... [more]
A0A6H5L3B6_9PHAE2.000e-8483.33PPIase cyclophilin-type domain-containing protein ... [more]
A0A6V1RCR2_HETAK9.960e-6360.92Peptidyl-prolyl cis-trans isomerase n=2 Tax=Hetero... [more]
G4ZG38_PHYSP7.050e-6263.58Peptidyl-prolyl cis-trans isomerase (Fragment) n=1... [more]
A0A8K1CG83_PYTOL8.960e-6265.03Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A2P4Y6R2_9STRA1.270e-6164.67Peptidyl-prolyl cis-trans isomerase n=1 Tax=Phytop... [more]
A0A3R7HCE3_9STRA2.840e-6163.31Peptidyl-prolyl cis-trans isomerase n=2 Tax=Phytop... [more]
A0A3F2RQ90_9STRA7.930e-6163.31Peptidyl-prolyl cis-trans isomerase n=1 Tax=Phytop... [more]
A0A662XMY0_9STRA1.070e-6062.13Peptidyl-prolyl cis-trans isomerase n=2 Tax=Nothop... [more]
A0A8J5J6B2_9STRA9.510e-5961.90PPIase cyclophilin-type domain-containing protein ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig15546contigH-elongata_contig15546:2651..7205 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score186.8
Seed ortholog evalue2e-44
Seed eggNOG ortholog2880.D7FWA1
Preferred namePPIG
KEGG koko:K01802,ko:K05864,ko:K09566,ko:K12740
KEGG Pathwayko04217,ko04218,map04217,map04218
GOsGO:0000375,GO:0000377,GO:0000398,GO:0000413,GO:0003674,GO:0003755,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005739,GO:0005829,GO:0005886,GO:0006139,GO:0006396,GO:0006397,GO:0006457,GO:0006464,GO:0006725,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0008380,GO:0009987,GO:0010467,GO:0016018,GO:0016020,GO:0016043,GO:0016070,GO:0016071,GO:0016363,GO:0016604,GO:0016607,GO:0016853,GO:0016859,GO:0018193,GO:0018208,GO:0019538,GO:0030198,GO:0031974,GO:0031981,GO:0033218,GO:0034399,GO:0034641,GO:0036211,GO:0042277,GO:0043062,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044464,GO:0046483,GO:0070013,GO:0071704,GO:0071840,GO:0071944,GO:0090304,GO:0140096,GO:1901360,GO:1901564
EggNOG free text desc.peptidyl-prolyl cis-trans isomerase activity
EggNOG OGsCOG0652@1,KOG0546@2759
EC5.2.1.8
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03041,ko03110
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionCyclophilin-like domain
Ec32 orthologEc-01_003910.1
Exons4
Model size1864
Cds size1230
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig15546.3631.1prot_H-elongata_contig15546.3631.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig15546 2651..5917 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929916.6171424-CDS-H-elongata_contig15546:2650..37181622929916.6171424-CDS-H-elongata_contig15546:2650..3718Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15546 2651..3718 -
1691679207.3775012-CDS-H-elongata_contig15546:2650..37181691679207.3775012-CDS-H-elongata_contig15546:2650..3718Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15546 2651..3718 -
1622929916.6298904-CDS-H-elongata_contig15546:4972..51311622929916.6298904-CDS-H-elongata_contig15546:4972..5131Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15546 4973..5131 -
1691679207.388571-CDS-H-elongata_contig15546:4972..51311691679207.388571-CDS-H-elongata_contig15546:4972..5131Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15546 4973..5131 -
1622929916.6453245-CDS-H-elongata_contig15546:5914..59171622929916.6453245-CDS-H-elongata_contig15546:5914..5917Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15546 5915..5917 -
1691679207.3970368-CDS-H-elongata_contig15546:5914..59171691679207.3970368-CDS-H-elongata_contig15546:5914..5917Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15546 5915..5917 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929916.6682608-UTR-H-elongata_contig15546:5917..59491622929916.6682608-UTR-H-elongata_contig15546:5917..5949Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig15546 5918..5949 -
1691679207.4080064-UTR-H-elongata_contig15546:5917..59491691679207.4080064-UTR-H-elongata_contig15546:5917..5949Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig15546 5918..5949 -
1622929916.6905403-UTR-H-elongata_contig15546:6603..72051622929916.6905403-UTR-H-elongata_contig15546:6603..7205Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig15546 6604..7205 -
1691679207.4192815-UTR-H-elongata_contig15546:6603..72051691679207.4192815-UTR-H-elongata_contig15546:6603..7205Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig15546 6604..7205 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig15546.3631.1

>prot_H-elongata_contig15546.3631.1 ID=prot_H-elongata_contig15546.3631.1|Name=mRNA_H-elongata_contig15546.3631.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=410bp
MCQGGDFERRNGTGGESIYGGKFKDEAAGLKLKHDKQHMLSMANTGEKNT
NGSQFFITTQRAPHLNGKHVVFGELESGAETLMKMSQVDTDRKDAPIPLQ
RVVIDDCGELSMLSEESGEEGGGRGRARTRANGGESKQGKKMKKRDREKE
KKGKKKTRMEKERKKKRDKGDRGHVGEERDKGRGRKAGRKRHKEKKRKKG
DGDRQKKKRRRLDDESDDSADSDDGSSGDDSDDSDEFDEPPAAAAAAERK
KRDDKHKRKELKKRKNRRRGDVDESSEDEDSEGEGPDGGRGHGQNDRSKE
NGAVGASRTKYDLVRVVNDNGSSKGKSKRDAVDKDKNGEGDGRTRFKGRG
ARVYHTPSPERQHEGKGRLSDRSRGDSRRGGGDGGGGGSSVGGNNRDRDG
NNRDRDRNNR
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mRNA from alignment at H-elongata_contig15546:2651..7205-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig15546.3631.1 ID=mRNA_H-elongata_contig15546.3631.1|Name=mRNA_H-elongata_contig15546.3631.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=4555bp|location=Sequence derived from alignment at H-elongata_contig15546:2651..7205- (Himanthalia elongata Himel1 dioecious)
ACGTCTAGTGTTTACATATCAATATTCTACATGTACTTATCCATAACCCT
CTGCGCCAAGCCTTTACCGTCTAACTAACCTCGTCACCCAATAGAGTATC
TTGGGCTTAGCCCATTATTGAAAAAAAAAATGAAATCATTTTTAACCCTC
CGAGCGTTCACGCCTTCTTAGCACAGTGAGAGGTGTGGTCCAGGGGATCA
ACTATCGTCAGGTTCGAATGTTTAGCGTACATTACTAAATATTACTAAAT
TACTATTAATTGGAGAAAAATCCCGGACGGAAAATGAAAACAGGAAAACA
ATGCCTGGCCAAGATAAATTTTTAATAATAAAAAAAAAAGTGCACCGTGC
CGAACACCCTTCCCGCTCCCAGAAAAATATCTGTTTTCCGTTACTCCAGT
GTCTTCTGTGTATCCGATGTGGGTTTGTTGGGGGCGACGGCGGGATGGGC
TGAATGACTCTGAACCATTCTCCTCGCAGCCGGTAGGCTGGTGTTCAAGC
TGTACACAGAGCAGGTGCCGCTTACGGCCGACAACTTTCGATGCCTGTGC
ACGGGAGAGAAGGGTGAGGGAAGAACCACGGGCAAGCCGCTGCACTACAA
AGGTGTGATGAATCGTGGGGCCGTTGTGGTCCGTGTGTTTCTTTACCCAA
CCATTCAGGCTCTAGAAAGTAGCTGGCGTTTCAGCGTGGTTTCATAATTT
CGGGATCGGTTAGCCTAAGCAAAGCTCTACAGGGACAATTTTGTATGCGT
GTTGTAGAATGCATGTGCAAGCAATAACGAACAAACAATTGCCGGGCAAA
AAAGAGACGTGGTCAGACGCGTGGCAGTACGTTCCATTTGTCGTCGGACA
GTAAAGCATAGCACAGCATAGCACAAGAAAATGTTGGCGCGGTCCAGCCA
ATGCTCGGGCCCCTCTCCGTAGAACGAATTTAGGTGGTTCTCGGTTCGAT
ACCGTTCTCCTGGTCAAGGAGGTGCAGCACCAGCACCACCACCACCAGCC
GCCGCCGCCGTCCAATCTTAGCATCGCGCTTTGGGCGGTCCTCAAAAGCA
CTCGTACCTTTGGAATATGACCGAGATCGTATAGCACGATGGTTACGAGA
GCGCGGGATAACCGGCGCGTGCTTCCCGGTTCTAACGAAGAGATTTCGCG
CAAGGCGTTGCTCAAGCCTGGCTGTCTCCATTCCCCTACCTCCTTGACTC
TTTTTTGCACTCTACCTCCTGACGGCGTCGTGTTTGCTGTCTCTTTTTTG
GATCAGGGATACCTTTCCACCGCATCATCCCGGGGTTCATGGTGAGCCGC
GCTGAAGGCGTGTTTCTTAGCCTTATCATTTTGGCGCTTTTACTGTCACG
CTTTTGTGATGAAGATGGCGATGAAGTTAAGAGTTGTTTTGGCCTTCCAA
GGTGAAATTGTTCCTGCGTTCTCCGAGACAAGTATCCACGAGTTAGACCT
GGTCATCGATGTATTCTCGTAGACGTCGAAGGGGATGGGAGGCTGGGGAC
ATCGACAAGTTGAGCTCGTTGCGGGTTGGCTTGGTACGTCGACTGACTCT
GAGCCTGACCACGAGGCTTATTTCATTGGAGCGATCGATCACGACGCGTG
TTCACTCCACAAAGCGGATCGGGGAGTACGATTGGGCAGGAACGAATGTT
GGCCTAGCCCACGTTTATGACCTGACAAAGTATTAATCAAGTATTAAAGT
GGGCAAGCGGNNNNNNNNNNATATATAGAAAAAAAAATAAAAAAAAAGAG
AAGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGTACA
TCAGTAGCATGAATATCCACGACTCGCTATTTCCCTCCGCTCCCCAGCCC
TGCCCAATGCACCTCTATCGATTCCCACCGACCCTTTATTGAGGGGAAAC
GCCTACTTAAAATATATCCAACCAACCTCTGCGCGAGGTCAGTCGCGAAA
GTTTCACTACGGCTTCTCTGTGAAACATTCTTATTTCTATACTGTCTGTA
CCGTGGAAGTTTCGTTTCATTGCTTCCGATACCGGGTCCTCCCCCATGTT
CTTTTTTCTTTCTGTTCCTCCCAGTGCCAGGGAGGCGACTTCGAGCGGCG
CAATGGGACGGGGGGGGAGAGCATCTACGGAGGAAAGTTCAAGGACGAGG
CGGCGGGGCTGAAGCTGAAGCACGACAAGCAGCACATGCTGTCGATGGCC
AATACGGGCGAAAAGAACACCAACGGGAGTCAGGTGAACAGAAAGACAGA
AAAAAAGAGACGACCCGATTAACTCTTTTTATCCCTCCCCCTTAGGTAAC
AATACTCCACGTTGCTATTGAAAGATCCCCTCTAAGTTAAGTTATCTATG
CTTCCATAAGGTTTACCCGAAATTTAACTGAGACATAGTATGTACAATGC
TGTGCCAACCCTCCCACTACATACTATTCACCCCCTAGGCTCTGATCTGG
TGTCATAGTCCCCATATATTATGATGAATCACATGATGTTGTGACGATTT
TGTGCTGAAAGGCAGTATTTCCCTGTAATAAATTTACAGTTCACTCCCTT
GGATCTGGTTTGGTTTGATGTGCTCATATAAAGAATAAGCCAACCTATGG
TACTACTCGTTCATTAGCTGCAACTACGATTACCGTTGAGTACAAAGTCG
TCACACGTGAGTATATTTTTAGAAAGATATAGGCCAGTAAAGCACATGGT
TGCATTGTACATACATTTCGATCAATTTCGGACTGTATTACGCTATCAGC
GATCGTAGTACACTTGTATTGTATTGTAGATATATCTCGATTATCAACGA
TTGTAGATTATTGTTACCTAGGGGGGAGGGATAAAAGGAGTTACGAGGGT
CTAGACCATGGTAACCACTACAAGCGTGCTCAGCGCGTGAGGTACTCATG
TCATCCCTCGGGACTGTCATCTCTCGGGAGTCTACCAAGGTGATGGTGAT
AGGGGAAGCCTACGTATAGTATGAATCAACCGAATATGTCCTATGGTTGA
CAATCCTGCTCGTGGTAATCTGAGCAGGGAAACTTCGAGAATTTGATTTC
TCGGTCCACTTTCCCGCCTGATAATTTAGTCTCGAGAGTAGTTATATTTA
TATTTATCGTGATTCCATGATTTGCCAGGCGTGATACAGCAGCTATTAGC
TATTATATTGTATAGTATATTATATTATAGCTTCTTGTCTCCCGGCGCCG
GGTGTGCGACGCGCGTGCTTGGCGCCGCTCTGCCATGTGACGTATGACCG
ATGACCTGTACCTGTACCTTCTATCTGACAGTAAGTACGACGTTGTACCT
ATTAGATTAGCATGCCCTCCAGCAGTGACATGAGGAAAGTCGCTGGAAAA
AACGAACCACGTCGGCTCGTTTCCCGCCGAAAACCAGCCAACTTACCACC
CCTGTTTTGTTGGCTAATTACTAATTATTCTCGCCTCTTTTCGGTCACGG
CCGGCGTCCCCTCCCCCCCCCCTAAAAAAACACTCAGTTCTTCATCACGA
CCCAGCGGGCTCCCCACCTGAACGGGAAGCACGTGGTTTTCGGCGAGCTG
GAGTCCGGCGCAGAGACTCTGATGAAGATGTCCCAGGTGGATACGGACAG
GAAAGACGCGCCGATCCCTTTGCAGCGGGTCGTAATCGATGATTGTGGGG
AGCTATCGATGCTTTCGGAGGAGAGTGGTGAAGAAGGAGGCGGACGAGGC
AGGGCGAGAACGAGGGCAAACGGCGGGGAATCGAAGCAGGGGAAGAAGAT
GAAGAAAAGAGATAGGGAGAAGGAAAAAAAGGGCAAGAAAAAGACTAGAA
TGGAGAAGGAGAGGAAAAAAAAGCGAGATAAAGGGGATAGGGGACATGTG
GGGGAGGAGAGGGACAAAGGGAGGGGAAGGAAGGCGGGCAGAAAGCGACA
CAAGGAGAAGAAACGTAAAAAGGGGGACGGTGACAGGCAGAAAAAGAAAC
GACGACGTCTCGACGACGAAAGTGATGATAGTGCGGATTCAGATGATGGC
AGCAGCGGTGATGACTCCGATGATTCCGATGAGTTTGACGAGCCGCCTGC
TGCTGCTGCGGCGGCGGAGCGCAAGAAGCGCGATGACAAGCACAAGCGTA
AGGAGCTGAAGAAGAGGAAGAATAGGAGGAGAGGAGACGTCGACGAAAGC
AGCGAAGACGAAGACAGCGAGGGCGAAGGCCCTGACGGTGGGCGAGGGCA
TGGTCAGAACGATCGCTCCAAGGAGAATGGCGCTGTGGGCGCTAGCAGGA
CAAAATATGACCTTGTCAGAGTCGTCAACGACAACGGCAGCAGTAAAGGT
AAAAGCAAAAGGGATGCAGTCGACAAGGACAAGAACGGCGAGGGTGACGG
CCGGACCCGCTTCAAGGGCCGCGGCGCGCGGGTGTACCATACACCCTCGC
CCGAGCGCCAACATGAAGGCAAGGGTCGACTTTCTGATCGGAGCCGTGGT
GATTCCCGCAGGGGAGGTGGCGACGGTGGTGGTGGTGGTAGCAGCGTTGG
CGGGAATAACCGCGATCGTGACGGGAATAACCGTGATCGTGACCGGAATA
ACCGC
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Coding sequence (CDS) from alignment at H-elongata_contig15546:2651..7205-

>mRNA_H-elongata_contig15546.3631.1 ID=mRNA_H-elongata_contig15546.3631.1|Name=mRNA_H-elongata_contig15546.3631.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2460bp|location=Sequence derived from alignment at H-elongata_contig15546:2651..7205- (Himanthalia elongata Himel1 dioecious)
ATGATGTGCCAGGGAGGCGACTTCGAGCGGCGCAATGGGACGGGGGGGGA
GAGCATCTACGGAGGAAAGTTCAAGGACGAGGCGGCGGGGCTGAAGCTGA
AGCACGACAAGCAGCACATGCTGTCGATGGCCAATACGGGCGAAAAGAAC
ACCAACGGGAGTCAGTGCCAGGGAGGCGACTTCGAGCGGCGCAATGGGAC
GGGGGGGGAGAGCATCTACGGAGGAAAGTTCAAGGACGAGGCGGCGGGGC
TGAAGCTGAAGCACGACAAGCAGCACATGCTGTCGATGGCCAATACGGGC
GAAAAGAACACCAACGGGAGTCAGTTCTTCATCACGACCCAGCGGGCTCC
CCACCTGAACGGGAAGCACGTGGTTTTCGGCGAGCTGGAGTCCGGCGCAG
AGACTCTGATGAAGATGTCCCAGGTGGATACGGACAGGAAAGACGCGCCG
ATCCCTTTGCAGCGGGTCGTAATCGATGATTGTGGGGAGCTATCGATGCT
TTCGGAGGAGAGTGGTGAAGAAGGAGGCGGACGAGGCAGGGCGAGAACGA
GGGCAAACGGCGGGGAATCGAAGCAGGGGAAGAAGATGAAGAAAAGAGAT
AGGGAGAAGGAAAAAAAGGGCAAGAAAAAGACTAGAATGGAGAAGGAGAG
GAAAAAAAAGCGAGATAAAGGGGATAGGGGACATGTGGGGGAGGAGAGGG
ACAAAGGGAGGGGAAGGAAGGCGGGCAGAAAGCGACACAAGGAGAAGAAA
CGTAAAAAGGGGGACGGTGACAGGCAGAAAAAGAAACGACGACGTCTCGA
CGACGAAAGTGATGATAGTGCGGATTCAGATGATGGCAGCAGCGGTGATG
ACTCCGATGATTCCGATGAGTTTGACGAGCCGCCTGCTGCTGCTGCGGCG
GCGGAGCGCAAGAAGCGCGATGACAAGCACAAGCGTAAGGAGCTGAAGAA
GAGGAAGAATAGGAGGAGAGGAGACGTCGACGAAAGCAGCGAAGACGAAG
ACAGCGAGGGCGAAGGCCCTGACGGTGGGCGAGGGCATGGTCAGAACGAT
CGCTCCAAGGAGAATGGCGCTGTGGGCGCTAGCAGGACAAAATATGACCT
TGTCAGAGTCGTCAACGACAACGGCAGCAGTAAAGGTAAAAGCAAAAGGG
ATGCAGTCGACAAGGACAAGAACGGCGAGGGTGACGGCCGGACCCGCTTC
AAGGGCCGCGGCGCGCGGGTGTACCATACACCCTCGCCCGAGCGCCAACA
TGAAGGCAAGGGTCGACTTTCTGATCGGAGCCGTGGTGATTCCCGCAGGG
GAGGTGGCGACGGTGGTGGTGGTGGTAGCAGCGTTGGCGGGAATAACCGC
GATCGTGACGGGAATAACCGTGATCGTGACCGGAATAACCGCTTCTTCAT
CACGACCCAGCGGGCTCCCCACCTGAACGGGAAGCACGTGGTTTTCGGCG
AGCTGGAGTCCGGCGCAGAGACTCTGATGAAGATGTCCCAGGTGGATACG
GACAGGAAAGACGCGCCGATCCCTTTGCAGCGGGTCGTAATCGATGATTG
TGGGGAGCTATCGATGCTTTCGGAGGAGAGTGGTGAAGAAGGAGGCGGAC
GAGGCAGGGCGAGAACGAGGGCAAACGGCGGGGAATCGAAGCAGGGGAAG
AAGATGAAGAAAAGAGATAGGGAGAAGGAAAAAAAGGGCAAGAAAAAGAC
TAGAATGGAGAAGGAGAGGAAAAAAAAGCGAGATAAAGGGGATAGGGGAC
ATGTGGGGGAGGAGAGGGACAAAGGGAGGGGAAGGAAGGCGGGCAGAAAG
CGACACAAGGAGAAGAAACGTAAAAAGGGGGACGGTGACAGGCAGAAAAA
GAAACGACGACGTCTCGACGACGAAAGTGATGATAGTGCGGATTCAGATG
ATGGCAGCAGCGGTGATGACTCCGATGATTCCGATGAGTTTGACGAGCCG
CCTGCTGCTGCTGCGGCGGCGGAGCGCAAGAAGCGCGATGACAAGCACAA
GCGTAAGGAGCTGAAGAAGAGGAAGAATAGGAGGAGAGGAGACGTCGACG
AAAGCAGCGAAGACGAAGACAGCGAGGGCGAAGGCCCTGACGGTGGGCGA
GGGCATGGTCAGAACGATCGCTCCAAGGAGAATGGCGCTGTGGGCGCTAG
CAGGACAAAATATGACCTTGTCAGAGTCGTCAACGACAACGGCAGCAGTA
AAGGTAAAAGCAAAAGGGATGCAGTCGACAAGGACAAGAACGGCGAGGGT
GACGGCCGGACCCGCTTCAAGGGCCGCGGCGCGCGGGTGTACCATACACC
CTCGCCCGAGCGCCAACATGAAGGCAAGGGTCGACTTTCTGATCGGAGCC
GTGGTGATTCCCGCAGGGGAGGTGGCGACGGTGGTGGTGGTGGTAGCAGC
GTTGGCGGGAATAACCGCGATCGTGACGGGAATAACCGTGATCGTGACCG
GAATAACCGC
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