mRNA_H-elongata_contig155415.3630.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig155415.3630.1
Unique NamemRNA_H-elongata_contig155415.3630.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig155415.3630.1 vs. uniprot
Match: A0A6H5L453_9PHAE (Protein transport protein SEC23 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L453_9PHAE)

HSP 1 Score: 139 bits (350), Expect = 1.200e-38
Identity = 60/80 (75.00%), Postives = 68/80 (85.00%), Query Frame = 1 
Query:    4 GSLGLPTGALFSPFSRMAPPPPRIPRQPILCTSCLAYPNPFCRVDPATGGWKCSFCGKNNPCYTEDFIGSSPAEYRDSYP 243
            GSLGLPTGALF+PF+ + P P RIPRQP+LCT C AYP+PFCRVDP TG W+C FC K NPCY EDFIGSSPAE+RDS+P
Sbjct:   26 GSLGLPTGALFAPFAELQPSPARIPRQPVLCTFCSAYPSPFCRVDPGTGRWRCCFCEKENPCYAEDFIGSSPAEHRDSFP 105
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BLAST of mRNA_H-elongata_contig155415.3630.1 vs. uniprot
Match: A0A7S4AG41_9STRA (Protein transport protein SEC23 (Fragment) n=2 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4AG41_9STRA)

HSP 1 Score: 52.8 bits (125), Expect = 3.600e-6
Identity = 25/58 (43.10%), Postives = 32/58 (55.17%), Query Frame = 1 
Query:   85 PILCTSCLAYPNPFCRVDPATGGWKCSFCGKNNPCYTEDF---------IGSSPAEYR 231
            PILCTSCLAY NP+ ++D  TG W C+ CG  N    E+          + S+  EYR
Sbjct:   32 PILCTSCLAYMNPYVQMDVGTGIWSCALCGHQNAVPVEELREGSRIATALSSACVEYR 89
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig155415.3630.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5L453_9PHAE1.200e-3875.00Protein transport protein SEC23 n=1 Tax=Ectocarpus... [more]
A0A7S4AG41_9STRA3.600e-643.10Protein transport protein SEC23 (Fragment) n=2 Tax... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig155415contigH-elongata_contig155415:883..1125 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size243
Cds size243
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929916.5697503-CDS-H-elongata_contig155415:882..11251622929916.5697503-CDS-H-elongata_contig155415:882..1125Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig155415 883..1125 -
1691679207.3609872-CDS-H-elongata_contig155415:882..11251691679207.3609872-CDS-H-elongata_contig155415:882..1125Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig155415 883..1125 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig155415.3630.1prot_H-elongata_contig155415.3630.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig155415 883..1125 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig155415.3630.1

>prot_H-elongata_contig155415.3630.1 ID=prot_H-elongata_contig155415.3630.1|Name=mRNA_H-elongata_contig155415.3630.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=81bp
VGSLGLPTGALFSPFSRMAPPPPRIPRQPILCTSCLAYPNPFCRVDPATG
GWKCSFCGKNNPCYTEDFIGSSPAEYRDSYP
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mRNA from alignment at H-elongata_contig155415:883..1125-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig155415.3630.1 ID=mRNA_H-elongata_contig155415.3630.1|Name=mRNA_H-elongata_contig155415.3630.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=243bp|location=Sequence derived from alignment at H-elongata_contig155415:883..1125- (Himanthalia elongata Himel1 dioecious)
GTCGGAAGCCTAGGCCTTCCCACCGGAGCTCTCTTCTCGCCTTTCTCTCG
GATGGCGCCCCCGCCGCCCCGCATCCCGCGACAGCCAATCCTGTGTACCT
CCTGCCTGGCGTACCCAAACCCTTTCTGCCGCGTGGATCCCGCCACCGGA
GGGTGGAAGTGTTCCTTCTGTGGCAAGAACAACCCTTGCTACACCGAAGA
CTTCATAGGGTCCAGCCCTGCCGAATACCGCGACTCATACCCC
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Coding sequence (CDS) from alignment at H-elongata_contig155415:883..1125-

>mRNA_H-elongata_contig155415.3630.1 ID=mRNA_H-elongata_contig155415.3630.1|Name=mRNA_H-elongata_contig155415.3630.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=486bp|location=Sequence derived from alignment at H-elongata_contig155415:883..1125- (Himanthalia elongata Himel1 dioecious)
GTCGGAAGCCTAGGCCTTCCCACCGGAGCTCTCTTCTCGCCTTTCTCTCG
GATGGCGCCCCCGCCGCCCCGCATCCCGCGACAGCCAATCCTGTGTACCT
CCTGCCTGGCGTACCCAAACCCTTTCTGCCGCGTGGATCCCGCCACCGGA
GGGTGGAAGTGTTCCTTCTGTGGCAAGAACAACCCTTGCTACACCGAAGA
CTTCATAGGGTCCAGCCCTGCCGAATACCGCGACTCATACCCCGTCGGAA
GCCTAGGCCTTCCCACCGGAGCTCTCTTCTCGCCTTTCTCTCGGATGGCG
CCCCCGCCGCCCCGCATCCCGCGACAGCCAATCCTGTGTACCTCCTGCCT
GGCGTACCCAAACCCTTTCTGCCGCGTGGATCCCGCCACCGGAGGGTGGA
AGTGTTCCTTCTGTGGCAAGAACAACCCTTGCTACACCGAAGACTTCATA
GGGTCCAGCCCTGCCGAATACCGCGACTCATACCCC
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