mRNA_H-elongata_contig15535.3627.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig15535.3627.1
Unique NamemRNA_H-elongata_contig15535.3627.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig15535.3627.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig15535contigH-elongata_contig15535:5885..7472 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size645
Cds size399
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig15535.3627.1prot_H-elongata_contig15535.3627.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig15535 5885..6387 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929916.005522-CDS-H-elongata_contig15535:5884..62081622929916.005522-CDS-H-elongata_contig15535:5884..6208Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15535 5885..6208 +
1691679207.227508-CDS-H-elongata_contig15535:5884..62081691679207.227508-CDS-H-elongata_contig15535:5884..6208Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15535 5885..6208 +
1622929916.0186388-CDS-H-elongata_contig15535:6312..63871622929916.0186388-CDS-H-elongata_contig15535:6312..6387Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15535 6313..6387 +
1691679207.2469091-CDS-H-elongata_contig15535:6312..63871691679207.2469091-CDS-H-elongata_contig15535:6312..6387Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15535 6313..6387 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929916.0373323-UTR-H-elongata_contig15535:6387..66011622929916.0373323-UTR-H-elongata_contig15535:6387..6601Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig15535 6388..6601 +
1691679207.2647436-UTR-H-elongata_contig15535:6387..66011691679207.2647436-UTR-H-elongata_contig15535:6387..6601Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig15535 6388..6601 +
1622929916.0510817-UTR-H-elongata_contig15535:7440..74721622929916.0510817-UTR-H-elongata_contig15535:7440..7472Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig15535 7441..7472 +
1691679207.2774465-UTR-H-elongata_contig15535:7440..74721691679207.2774465-UTR-H-elongata_contig15535:7440..7472Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig15535 7441..7472 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig15535.3627.1

>prot_H-elongata_contig15535.3627.1 ID=prot_H-elongata_contig15535.3627.1|Name=mRNA_H-elongata_contig15535.3627.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=133bp
GASAGRPIARAEQPNEVVDLAFSDDDDVDHIPPQSTGCGCLPSGAGEASL
LNKNAREEGVARKGGDSNLRLDPSLAEKALGPKRLASLEDFWNSSTGGGS
SRGRDKQLEWKYRRKGRSRGVNIRRTWRRPQQ*
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mRNA from alignment at H-elongata_contig15535:5885..7472+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig15535.3627.1 ID=mRNA_H-elongata_contig15535.3627.1|Name=mRNA_H-elongata_contig15535.3627.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1588bp|location=Sequence derived from alignment at H-elongata_contig15535:5885..7472+ (Himanthalia elongata Himel1 dioecious)
GGGGCCTCTGCGGGTCGCCCGATTGCGAGGGCCGAGCAGCCGAACGAGGT
TGTAGACCTCGCTTTTTCCGACGACGATGATGTCGACCACATCCCGCCGC
AGTCGACCGGCTGTGGCTGTCTCCCTTCGGGGGCGGGAGAGGCTTCGCTG
TTGAACAAGAACGCTAGAGAAGAAGGAGTCGCGAGGAAAGGCGGTGACAG
TAATCTTCGTCTTGATCCCTCTCTCGCGGAGAAGGCATTGGGGCCGAAAA
GACTGGCTTCCTTGGAAGACTTCTGGAACTCCAGCACCGGTGGTGGTAGC
AGCAGAGGCAGGGACAAGCAGTTGGCATCGCGTGTCGAGGACGAGCGACG
AAAAGGCTTGGGGGAAAGTTCGTTGTTGAACAGAGCGGGGGAGTCGGCAG
CGGCTTCACTCGGGAAGGGGTCGAGAAGGAATGGAAGTACCGTAGAAAGG
GCAGGAGCAGGGGGGTCAACATCAGGCGGACCTGGAGGCGACCGCAGCAG
TAGTGGCAGCAGGCGAAGCAAGGCCAGTGATCTTGACGATTCAGATTATG
AAATTGGTGGCAGCGGTAGCGATGGCTTGAGGGACACGGAAAATTCGGAA
GTCGGAGACGACGATTTCGATTTAAATACCGACGATGATGACGACGACGT
GGTGTTTCAGGGCGTCCATCTCGGCAGAAGGAGAGAAGGGCCCTTGGACG
AGAAACAAGAGCGTGAGGTACGCCTTTTGTAATAACTTCACGCGGCGTGT
CCTGTATGTTCTGTGCCTTGTGCGTATCTCCGTATCTTAAATGTTTCTTG
CGGGGATGTGGGCGCGTAAATGTGTTATGTTATACCCTAACGGACGTGGG
CCACGTATTTCCGTATTCCAACATTCGCCGTGTTTTCGACGGTCAGACTG
TGTTTCACTATTAAAAGGAAGATACACCAGCTATTATTATTATTATTACT
ATTATTATTATTATTATTATTATTGTTATCTTCGCGTTTGCTACACTAGG
CCAGACATACGGTGGGTTAATTGGGCACGCCGGACCGCCTAACGTTGAGC
ATTGAGCGCGCAAGACTAAATTCCCTCGCCGCCACCGCTAGCTTGTGTGG
GAAAAAATCGTGCTGTATGAATTCATGGATTCATGGATGTCAGCCGTACG
CTACAAACACCCCAACGTGTGGAACAAAAGCCACCCCTTAAAACCAAGAC
GGTGCAAGCATGACCTTTTTTTTGCTGCGCCTATTAGTCGAATCTCGACG
GATCGGCGGATTTGACCCGGCGATCGCGTCGGTCGAGAGATAACTCTGTA
TAGAACGGCCTTTCACCTGTGAACATGGAGCGGTTTTGTTGTACCGTTGG
CCTATTCATAGAACATATTGCCAAAAAAGTGTGTAGCCAACACACACACA
CAGACCTACCTGATGCTGACTCCCTGCGTTAGTATTTTGGTGGGGCACAC
TTGGACGCGGTTTGTCAACGGAATCATCTATCTTCCAACGATTCGCCGCA
GCATCATCTCTCTTTTCTCTGCTGCTACTTGTCGCTGTCGCCGCCGCCGA
GCACAGGTGGCCGGTTTGAGAGAAAAAGAAAAGGAGCG
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Coding sequence (CDS) from alignment at H-elongata_contig15535:5885..7472+

>mRNA_H-elongata_contig15535.3627.1 ID=mRNA_H-elongata_contig15535.3627.1|Name=mRNA_H-elongata_contig15535.3627.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=798bp|location=Sequence derived from alignment at H-elongata_contig15535:5885..7472+ (Himanthalia elongata Himel1 dioecious)
GGGGCCTCTGCGGGTCGCCCGATTGCGAGGGCCGAGCAGCCGAACGAGGT
TGTAGACCTCGCTTTTTCCGACGACGATGATGTCGACCACATCCCGCCGC
AGTCGACCGGCTGTGGCTGTCTCCCTTCGGGGGCGGGAGAGGCTTCGCTG
TTGAACAAGAACGCTAGAGAAGAAGGAGTCGCGAGGAAAGGCGGTGACAG
TAATCTTCGTCTTGATCCCTCTCTCGCGGAGAAGGCATTGGGGCCGAAAA
GACTGGCTTCCTTGGAAGACTTCTGGAACTCCAGCACCGGTGGTGGTAGC
AGCAGAGGCAGGGACAAGCAGTTGGGGGCCTCTGCGGGTCGCCCGATTGC
GAGGGCCGAGCAGCCGAACGAGGTTGTAGACCTCGCTTTTTCCGACGACG
ATGATGTCGACCACATCCCGCCGCAGTCGACCGGCTGTGGCTGTCTCCCT
TCGGGGGCGGGAGAGGCTTCGCTGTTGAACAAGAACGCTAGAGAAGAAGG
AGTCGCGAGGAAAGGCGGTGACAGTAATCTTCGTCTTGATCCCTCTCTCG
CGGAGAAGGCATTGGGGCCGAAAAGACTGGCTTCCTTGGAAGACTTCTGG
AACTCCAGCACCGGTGGTGGTAGCAGCAGAGGCAGGGACAAGCAGTTGGA
ATGGAAGTACCGTAGAAAGGGCAGGAGCAGGGGGGTCAACATCAGGCGGA
CCTGGAGGCGACCGCAGCAGTAGGAATGGAAGTACCGTAGAAAGGGCAGG
AGCAGGGGGGTCAACATCAGGCGGACCTGGAGGCGACCGCAGCAGTAG
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