mRNA_H-elongata_contig15535.3625.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig15535.3625.1
Unique NamemRNA_H-elongata_contig15535.3625.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig15535.3625.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig15535contigH-elongata_contig15535:3945..4713 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size367
Cds size363
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929915.9230309-CDS-H-elongata_contig15535:3944..40011622929915.9230309-CDS-H-elongata_contig15535:3944..4001Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15535 3945..4001 +
1691679207.2068782-CDS-H-elongata_contig15535:3944..40011691679207.2068782-CDS-H-elongata_contig15535:3944..4001Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15535 3945..4001 +
1622929915.9431436-CDS-H-elongata_contig15535:4405..47111622929915.9431436-CDS-H-elongata_contig15535:4405..4711Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15535 4406..4711 +
1691679207.2179532-CDS-H-elongata_contig15535:4405..47111691679207.2179532-CDS-H-elongata_contig15535:4405..4711Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15535 4406..4711 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig15535.3625.1prot_H-elongata_contig15535.3625.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig15535 3945..4711 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig15535.3625.1

>prot_H-elongata_contig15535.3625.1 ID=prot_H-elongata_contig15535.3625.1|Name=mRNA_H-elongata_contig15535.3625.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=121bp
ALAVERFFERDTKTKEKEKVRSARKATLRTRDGPLGVGCYVCESRMPGEW
KRMTRDRGGSGSGSGSGIMSLLGENSAADRKSSEAVTTNSNGTCSEESRG
RTAADRSHGAAYCEEEEDVGW
back to top

mRNA from alignment at H-elongata_contig15535:3945..4713+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig15535.3625.1 ID=mRNA_H-elongata_contig15535.3625.1|Name=mRNA_H-elongata_contig15535.3625.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=769bp|location=Sequence derived from alignment at H-elongata_contig15535:3945..4713+ (Himanthalia elongata Himel1 dioecious)
GCACTCGCGGTTGAGAGGTTCTTCGAGCGGGATACGAAGACGAAGGAAAA
AGAGAAGGCATGTATGGCTCGCTGGCTGTGTGTCGCCGTTTTGTGTATAT
ATTATGAGTCTAGTGTGTCTTGTTTTAGTTGCAGTGTATTTATATTTATA
GCGTGTCGTCAAAGGAGAGACACTTGTAAAGGCGGAACCACGACCGTTCA
GTCTAAATGAAGCCCCGTAGCCAATATGAGGAGCATGAACGCACCGTGAT
TCTCCCTCAGCGACGACAGATATTTATCTCCTACGTTTTCGTGTCAACCC
AAACCATATGGGATATGCCGTTTGATCGTGGAACCGTGTTTCTTCACGAT
CCACCGTCCCGTGCTACCACGAGCAACCGAGTGGACGCGGCGGAAAAAAA
TGTTTGCCACATCTACCTCTTCCCCGTTCCATCTTTTGCGACCGACGCTA
ACGTCTCTTAGGTGCGCAGCGCCAGGAAGGCTACGCTTCGGACTCGGGAC
GGTCCGCTGGGGGTCGGTTGTTACGTGTGCGAATCGAGAATGCCAGGCGA
ATGGAAGCGCATGACGAGAGACCGCGGAGGTAGTGGTAGTGGCAGTGGCA
GTGGCATCATGTCCCTTTTGGGGGAAAATTCTGCCGCTGATAGGAAATCG
TCTGAAGCTGTCACCACCAACAGTAACGGTACCTGTTCGGAGGAGAGCCG
AGGTCGAACTGCAGCAGATCGCTCGCACGGCGCAGCGTACTGTGAAGAAG
AGGAAGATGTGGGCTGGGG
back to top

Coding sequence (CDS) from alignment at H-elongata_contig15535:3945..4713+

>mRNA_H-elongata_contig15535.3625.1 ID=mRNA_H-elongata_contig15535.3625.1|Name=mRNA_H-elongata_contig15535.3625.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=726bp|location=Sequence derived from alignment at H-elongata_contig15535:3945..4713+ (Himanthalia elongata Himel1 dioecious)
GCACTCGCGGTTGAGAGGTTCTTCGAGCGGGATACGAAGACGAAGGAAAA
AGAGAAGGCACTCGCGGTTGAGAGGTTCTTCGAGCGGGATACGAAGACGA
AGGAAAAAGAGAAGGTGCGCAGCGCCAGGAAGGCTACGCTTCGGACTCGG
GACGGTCCGCTGGGGGTCGGTTGTTACGTGTGCGAATCGAGAATGCCAGG
CGAATGGAAGCGCATGACGAGAGACCGCGGAGGTAGTGGTAGTGGCAGTG
GCAGTGGCATCATGTCCCTTTTGGGGGAAAATTCTGCCGCTGATAGGAAA
TCGTCTGAAGCTGTCACCACCAACAGTAACGGTACCTGTTCGGAGGAGAG
CCGAGGTCGAACTGCAGCAGATCGCTCGCACGGCGCAGCGTACTGTGAAG
AAGAGGAAGATGTGGGCTGGGTGCGCAGCGCCAGGAAGGCTACGCTTCGG
ACTCGGGACGGTCCGCTGGGGGTCGGTTGTTACGTGTGCGAATCGAGAAT
GCCAGGCGAATGGAAGCGCATGACGAGAGACCGCGGAGGTAGTGGTAGTG
GCAGTGGCAGTGGCATCATGTCCCTTTTGGGGGAAAATTCTGCCGCTGAT
AGGAAATCGTCTGAAGCTGTCACCACCAACAGTAACGGTACCTGTTCGGA
GGAGAGCCGAGGTCGAACTGCAGCAGATCGCTCGCACGGCGCAGCGTACT
GTGAAGAAGAGGAAGATGTGGGCTGG
back to top