mRNA_H-elongata_contig155332.3623.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig155332.3623.1 vs. uniprot
Match: D8LHB2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHB2_ECTSI) HSP 1 Score: 87.0 bits (214), Expect = 2.410e-18 Identity = 46/71 (64.79%), Postives = 54/71 (76.06%), Query Frame = 1
Query: 1 FSQGAMPFLVTYAVALNAIPAVRWLLNKRENAAIEKRNELRWQWGARARGGADRVVERKLRAARAMTRDLK 213
F QGA+PFL+TYAVALN IPAVR++LNKRENA IE RN LR +W R G VV RKL+AA+ MT D+K
Sbjct: 441 FVQGALPFLLTYAVALNVIPAVRFVLNKRENAKIEGRNFLRRKWAEAGRSGGA-VVSRKLKAAKTMTTDMK 510
BLAST of mRNA_H-elongata_contig155332.3623.1 vs. uniprot
Match: A0A6H5L6N5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6N5_9PHAE) HSP 1 Score: 85.1 bits (209), Expect = 4.170e-18 Identity = 44/68 (64.71%), Postives = 53/68 (77.94%), Query Frame = 1
Query: 10 GAMPFLVTYAVALNAIPAVRWLLNKRENAAIEKRNELRWQWGARARGGADRVVERKLRAARAMTRDLK 213
GA+PFL+TYAVALN IPAVR++LNKRENA IE RN LR +W R G D V+ RKL+AA+ MT D+K
Sbjct: 210 GALPFLLTYAVALNVIPAVRFVLNKRENAKIEGRNFLRRKWAEAGRSG-DAVISRKLKAAKTMTTDMK 276
BLAST of mRNA_H-elongata_contig155332.3623.1 vs. uniprot
Match: A0A7R9YG27_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YG27_9STRA) HSP 1 Score: 56.2 bits (134), Expect = 1.720e-7 Identity = 30/67 (44.78%), Postives = 43/67 (64.18%), Query Frame = 1
Query: 1 FSQGAMPFLVTYAVALNAIPAVRWLLNKRENAAIEKRNELRWQWGARARGGADRV--VERKLRAARA 195
F+ +PFL+ YAVALNAIP +R+ N+R+NA I+KRN R + A R V + +K+ AA+A
Sbjct: 488 FAANLLPFLIPYAVALNAIPIIRYFKNQRDNAGIQKRNGARQRMRALLRTATSPVSRLSKKIAAAKA 554
BLAST of mRNA_H-elongata_contig155332.3623.1 vs. uniprot
Match: A0A0G4GCT4_9ALVE (Uncharacterized protein n=1 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4GCT4_9ALVE) HSP 1 Score: 55.8 bits (133), Expect = 2.350e-7 Identity = 31/69 (44.93%), Postives = 40/69 (57.97%), Query Frame = 1
Query: 4 SQGAMPFLVTYAVALNAIPAVRWLLNKRENAAIEKRNELRWQWGARARGGADRVVERKLRAARAMTRDL 210
+Q P L +YA+ LNAIP VRW LNK +NA I RN+ R +W A + G+ V KL AR + L
Sbjct: 441 AQRLYPALASYALVLNAIPFVRWRLNKSKNAEIRSRNDKRQRWSAYLKSGSA-YVRNKLGQARRFAQRL 508
BLAST of mRNA_H-elongata_contig155332.3623.1 vs. uniprot
Match: A0A388KS96_CHABU (Uncharacterized protein n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388KS96_CHABU) HSP 1 Score: 52.8 bits (125), Expect = 2.900e-6 Identity = 29/64 (45.31%), Postives = 35/64 (54.69%), Query Frame = 1
Query: 1 FSQGAMPFLVTYAVALNAIPAVRWLLNKRENAAIEKRNELRWQWGARARGGADRVVERKLRAAR 192
F +PFL YA + AIPA+RWLL K+ NA I+KRN R W G + RKL AR
Sbjct: 664 FVSQTLPFLQAYAASFFAIPAIRWLLLKKRNAEIDKRNNTRLGWAVHV-GRPTAPLRRKLLNAR 726
BLAST of mRNA_H-elongata_contig155332.3623.1 vs. uniprot
Match: A0A5C7HNF3_9ROSI (Uncharacterized protein n=1 Tax=Acer yangbiense TaxID=1000413 RepID=A0A5C7HNF3_9ROSI) HSP 1 Score: 51.6 bits (122), Expect = 7.290e-6 Identity = 32/66 (48.48%), Postives = 39/66 (59.09%), Query Frame = 1
Query: 1 FSQGAMPFLVTYAVALNAIPAVRWLLNKRENAAIEKRNELRWQWGARARGGADRVVERKLRAARAM 198
F P L YA + AIP VRW LN ++NA IEKRN+ R Q+ ARA D + RKL +AR M
Sbjct: 400 FVSYVYPLLQIYAGSFFAIPLVRWFLNLKKNADIEKRNQAREQF-ARALKSPDLPLRRKLLSARDM 464
BLAST of mRNA_H-elongata_contig155332.3623.1 vs. uniprot
Match: UPI000B8D18F7 (LOW QUALITY PROTEIN: uncharacterized protein At5g03900, chloroplastic n=1 Tax=Carica papaya TaxID=3649 RepID=UPI000B8D18F7) HSP 1 Score: 49.7 bits (117), Expect = 3.460e-5 Identity = 30/66 (45.45%), Postives = 38/66 (57.58%), Query Frame = 1
Query: 1 FSQGAMPFLVTYAVALNAIPAVRWLLNKRENAAIEKRNELRWQWGARARGGADRVVERKLRAARAM 198
F P L YA + AIP +RW +N++ NA IEKRN+ R Q+ ARA D + RKL AR M
Sbjct: 321 FVAEIFPLLQIYAGSFFAIPLIRWFINRKRNADIEKRNQAREQF-ARALELPDLSLRRKLLCARDM 385 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig155332.3623.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 7
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig155332.3623.1 >prot_H-elongata_contig155332.3623.1 ID=prot_H-elongata_contig155332.3623.1|Name=mRNA_H-elongata_contig155332.3623.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=67bp MPFLVTYAVALNAIPAVRWLLNKRENAAIEKRNELRWQWGARARGGADRVback to top mRNA from alignment at H-elongata_contig155332:92..307- Legend: UTRCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig155332.3623.1 ID=mRNA_H-elongata_contig155332.3623.1|Name=mRNA_H-elongata_contig155332.3623.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=216bp|location=Sequence derived from alignment at H-elongata_contig155332:92..307- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig155332:92..307- >mRNA_H-elongata_contig155332.3623.1 ID=mRNA_H-elongata_contig155332.3623.1|Name=mRNA_H-elongata_contig155332.3623.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=402bp|location=Sequence derived from alignment at H-elongata_contig155332:92..307- (Himanthalia elongata Himel1 dioecious)back to top |