mRNA_H-elongata_contig155307.3621.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig155307.3621.1
Unique NamemRNA_H-elongata_contig155307.3621.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig155307.3621.1 vs. uniprot
Match: D7FJH8_ECTSI (Fimbrin n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FJH8_ECTSI)

HSP 1 Score: 86.7 bits (213), Expect = 2.320e-18
Identity = 37/53 (69.81%), Postives = 43/53 (81.13%), Query Frame = 1 
Query:    1 KVAFARHLNHNLIGDPFLKHLMPLDSDGADLFHKFHDGVLLCRLVCMAVPGSI 159
            K  FA HLN +L+GDPFL HLMPLD  GADLF  F DGVL+CR+VC+A+PGSI
Sbjct:  135 KAVFACHLNAHLVGDPFLTHLMPLDPGGADLFDSFKDGVLMCRIVCLAIPGSI 187
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BLAST of mRNA_H-elongata_contig155307.3621.1 vs. uniprot
Match: A0A1J3IPI9_NOCCA (Fimbrin-1 n=1 Tax=Noccaea caerulescens TaxID=107243 RepID=A0A1J3IPI9_NOCCA)

HSP 1 Score: 67.4 bits (163), Expect = 1.370e-11
Identity = 28/55 (50.91%), Postives = 39/55 (70.91%), Query Frame = 1 
Query:    1 KVAFARHLNHNLIGDPFLKHLMPLDSDGADLFHKFHDGVLLCRLVCMAVPGSIGK 165
            K +F +H+N  L  DPFLKH +PLD D  DL+    DGVL+C+L+ +AVPG+I +
Sbjct:  121 KASFVQHINRYLGDDPFLKHFLPLDPDSNDLYELVKDGVLVCKLINVAVPGTIDE 175
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BLAST of mRNA_H-elongata_contig155307.3621.1 vs. uniprot
Match: UPI000B780FD0 (fimbrin-1-like n=1 Tax=Hevea brasiliensis TaxID=3981 RepID=UPI000B780FD0)

HSP 1 Score: 64.3 bits (155), Expect = 1.520e-10
Identity = 28/55 (50.91%), Postives = 38/55 (69.09%), Query Frame = 1 
Query:    1 KVAFARHLNHNLIGDPFLKHLMPLDSDGADLFHKFHDGVLLCRLVCMAVPGSIGK 165
            K ++  H+N  L  DPFLKH +PLD    DLF+   DGVLLC+L+ +AVPG+I +
Sbjct:  125 KASYVVHINSYLGDDPFLKHFLPLDPASNDLFNLVRDGVLLCKLINVAVPGTIDE 179
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BLAST of mRNA_H-elongata_contig155307.3621.1 vs. uniprot
Match: A0A3B6NQT3_WHEAT (Uncharacterized protein n=10 Tax=Triticinae TaxID=1648030 RepID=A0A3B6NQT3_WHEAT)

HSP 1 Score: 64.3 bits (155), Expect = 1.650e-10
Identity = 27/55 (49.09%), Postives = 40/55 (72.73%), Query Frame = 1 
Query:    1 KVAFARHLNHNLIGDPFLKHLMPLDSDGADLFHKFHDGVLLCRLVCMAVPGSIGK 165
            K+++  H+N+ L  DPFLK+ +PLD    DLF+   DGVLLC+L+ +AVPG+I +
Sbjct:  129 KISYVNHINNFLGDDPFLKNFLPLDPTSNDLFNLIGDGVLLCKLINIAVPGTIDE 183
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BLAST of mRNA_H-elongata_contig155307.3621.1 vs. uniprot
Match: A0A6I9QS00_ELAGV (fimbrin-4 n=2 Tax=Arecaceae TaxID=4710 RepID=A0A6I9QS00_ELAGV)

HSP 1 Score: 64.3 bits (155), Expect = 1.680e-10
Identity = 28/53 (52.83%), Postives = 38/53 (71.70%), Query Frame = 1 
Query:    1 KVAFARHLNHNLIGDPFLKHLMPLDSDGADLFHKFHDGVLLCRLVCMAVPGSI 159
            K ++  H+N  L  DPFLK+ +PLD D  DLF+   DGVLLC+L+ +AVPG+I
Sbjct:  125 KASYVAHINSYLRDDPFLKNYLPLDPDSNDLFNLAKDGVLLCKLINVAVPGTI 177
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BLAST of mRNA_H-elongata_contig155307.3621.1 vs. uniprot
Match: A0A0A9K4V4_ARUDO (Calponin-homology (CH) domain-containing protein n=1 Tax=Arundo donax TaxID=35708 RepID=A0A0A9K4V4_ARUDO)

HSP 1 Score: 63.5 bits (153), Expect = 1.740e-10
Identity = 27/55 (49.09%), Postives = 38/55 (69.09%), Query Frame = 1 
Query:    1 KVAFARHLNHNLIGDPFLKHLMPLDSDGADLFHKFHDGVLLCRLVCMAVPGSIGK 165
            K ++  H+N  L GDPFLK  +P+D  G  LF +  DGVLLC+L+ +AVPG+I +
Sbjct:  129 KSSYVAHINTYLRGDPFLKDYLPIDPAGNQLFDRIRDGVLLCKLINVAVPGTIDE 183
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BLAST of mRNA_H-elongata_contig155307.3621.1 vs. uniprot
Match: A0A7J9BBW5_GOSGO (Uncharacterized protein n=2 Tax=Gossypium TaxID=3633 RepID=A0A7J9BBW5_GOSGO)

HSP 1 Score: 63.5 bits (153), Expect = 3.100e-10
Identity = 28/55 (50.91%), Postives = 37/55 (67.27%), Query Frame = 1 
Query:    1 KVAFARHLNHNLIGDPFLKHLMPLDSDGADLFHKFHDGVLLCRLVCMAVPGSIGK 165
            K ++  H+N  L  DPFLK  +PLD    DLFH   DGVLLC+L+ +AVPG+I +
Sbjct:  125 KASYVTHINIYLADDPFLKQFLPLDPATNDLFHLAKDGVLLCKLINVAVPGTIDE 179
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BLAST of mRNA_H-elongata_contig155307.3621.1 vs. uniprot
Match: A0A2A6BI66_PRIPA (Plst-1 n=2 Tax=Pristionchus pacificus TaxID=54126 RepID=A0A2A6BI66_PRIPA)

HSP 1 Score: 63.5 bits (153), Expect = 3.120e-10
Identity = 25/55 (45.45%), Postives = 40/55 (72.73%), Query Frame = 1 
Query:    1 KVAFARHLNHNLIGDPFLKHLMPLDSDGADLFHKFHDGVLLCRLVCMAVPGSIGK 165
            +VAFA  +N NL  DP L  L+P+  +G DL+HK  DG+++C+L+ +AVPG++ +
Sbjct:  113 EVAFANWINSNLSADPDLAKLLPVILEGGDLYHKIEDGLIICKLINLAVPGTVDE 167
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BLAST of mRNA_H-elongata_contig155307.3621.1 vs. uniprot
Match: A0A2A2JVN8_9BILA (Uncharacterized protein n=3 Tax=Diploscapter pachys TaxID=2018661 RepID=A0A2A2JVN8_9BILA)

HSP 1 Score: 63.5 bits (153), Expect = 3.120e-10
Identity = 26/55 (47.27%), Postives = 39/55 (70.91%), Query Frame = 1 
Query:    1 KVAFARHLNHNLIGDPFLKHLMPLDSDGADLFHKFHDGVLLCRLVCMAVPGSIGK 165
            + AF+  +N NL GDP LK L+P+  D  DL+ K  DG++LC+L+ +AVPG+I +
Sbjct:  112 ETAFSNWINSNLSGDPDLKRLLPVTLDNGDLYEKVQDGLILCKLINLAVPGTIDE 166
[Close]
BLAST of mRNA_H-elongata_contig155307.3621.1 vs. uniprot
Match: A0A1U8KZ87_GOSHI (fimbrin-1-like n=24 Tax=Malvoideae TaxID=214907 RepID=A0A1U8KZ87_GOSHI)

HSP 1 Score: 63.5 bits (153), Expect = 3.130e-10
Identity = 28/55 (50.91%), Postives = 37/55 (67.27%), Query Frame = 1 
Query:    1 KVAFARHLNHNLIGDPFLKHLMPLDSDGADLFHKFHDGVLLCRLVCMAVPGSIGK 165
            K ++  H+N  L  DPFLK  +PLD    DLFH   DGVLLC+L+ +AVPG+I +
Sbjct:  125 KASYVTHINIYLADDPFLKQFLPLDPATNDLFHLAKDGVLLCKLINVAVPGTIDE 179
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig155307.3621.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FJH8_ECTSI2.320e-1869.81Fimbrin n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FJH8... [more]
A0A1J3IPI9_NOCCA1.370e-1150.91Fimbrin-1 n=1 Tax=Noccaea caerulescens TaxID=10724... [more]
UPI000B780FD01.520e-1050.91fimbrin-1-like n=1 Tax=Hevea brasiliensis TaxID=39... [more]
A0A3B6NQT3_WHEAT1.650e-1049.09Uncharacterized protein n=10 Tax=Triticinae TaxID=... [more]
A0A6I9QS00_ELAGV1.680e-1052.83fimbrin-4 n=2 Tax=Arecaceae TaxID=4710 RepID=A0A6I... [more]
A0A0A9K4V4_ARUDO1.740e-1049.09Calponin-homology (CH) domain-containing protein n... [more]
A0A7J9BBW5_GOSGO3.100e-1050.91Uncharacterized protein n=2 Tax=Gossypium TaxID=36... [more]
A0A2A6BI66_PRIPA3.120e-1045.45Plst-1 n=2 Tax=Pristionchus pacificus TaxID=54126 ... [more]
A0A2A2JVN8_9BILA3.120e-1047.27Uncharacterized protein n=3 Tax=Diploscapter pachy... [more]
A0A1U8KZ87_GOSHI3.130e-1050.91fimbrin-1-like n=24 Tax=Malvoideae TaxID=214907 Re... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig155307contigH-elongata_contig155307:174..362 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score87.8
Seed ortholog evalue2e-15
Seed eggNOG ortholog2880.D7FJH8
EggNOG free text desc.actin filament network formation
EggNOG OGsCOG5069@1,KOG0046@2759
COG Functional cat.Z
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size189
Cds size189
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929915.7618337-CDS-H-elongata_contig155307:173..3621622929915.7618337-CDS-H-elongata_contig155307:173..362Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig155307 174..362 +
1691679207.1554892-CDS-H-elongata_contig155307:173..3621691679207.1554892-CDS-H-elongata_contig155307:173..362Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig155307 174..362 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig155307.3621.1prot_H-elongata_contig155307.3621.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig155307 174..362 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig155307.3621.1

>prot_H-elongata_contig155307.3621.1 ID=prot_H-elongata_contig155307.3621.1|Name=mRNA_H-elongata_contig155307.3621.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=63bp
KVAFARHLNHNLIGDPFLKHLMPLDSDGADLFHKFHDGVLLCRLVCMAVP
GSIGKLYGVWAA*
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mRNA from alignment at H-elongata_contig155307:174..362+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig155307.3621.1 ID=mRNA_H-elongata_contig155307.3621.1|Name=mRNA_H-elongata_contig155307.3621.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=189bp|location=Sequence derived from alignment at H-elongata_contig155307:174..362+ (Himanthalia elongata Himel1 dioecious)
AAGGTGGCGTTCGCTCGTCATCTAAACCATAACCTTATCGGAGATCCGTT
CTTGAAGCACTTGATGCCGCTGGACTCCGACGGGGCCGACCTCTTTCACA
AGTTCCACGACGGGGTGCTGCTCTGCCGATTAGTCTGTATGGCTGTGCCG
GGTTCGATAGGTAAGCTGTATGGGGTATGGGCTGCATAG
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Coding sequence (CDS) from alignment at H-elongata_contig155307:174..362+

>mRNA_H-elongata_contig155307.3621.1 ID=mRNA_H-elongata_contig155307.3621.1|Name=mRNA_H-elongata_contig155307.3621.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=378bp|location=Sequence derived from alignment at H-elongata_contig155307:174..362+ (Himanthalia elongata Himel1 dioecious)
AAGGTGGCGTTCGCTCGTCATCTAAACCATAACCTTATCGGAGATCCGTT
CTTGAAGCACTTGATGCCGCTGGACTCCGACGGGGCCGACCTCTTTCACA
AGTTCCACGACGGGGTGCTGCTCTGCCGATTAGTCTGTATGGCTGTGCCG
GGTTCGATAGGTAAGCTGTATGGGGTATGGGCTGCATAGAAGGTGGCGTT
CGCTCGTCATCTAAACCATAACCTTATCGGAGATCCGTTCTTGAAGCACT
TGATGCCGCTGGACTCCGACGGGGCCGACCTCTTTCACAAGTTCCACGAC
GGGGTGCTGCTCTGCCGATTAGTCTGTATGGCTGTGCCGGGTTCGATAGG
TAAGCTGTATGGGGTATGGGCTGCATAG
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