mRNA_H-elongata_contig1553.3620.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig1553.3620.1 vs. uniprot
Match: A0A6H5KYR0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYR0_9PHAE) HSP 1 Score: 612 bits (1579), Expect = 4.440e-200 Identity = 410/919 (44.61%), Postives = 493/919 (53.65%), Query Frame = 1
Query: 232 MWAMIFSLLIVVSSRSDDPRTRMDSHAVSSVLSLRSGGRD----SILTNSTMRTDGNVAIRPANATNTVVTWSIPRNAGRKGASRGRRKRSKSASERPRAHITNAKGTVSPLAPGSR---TIALLIGAIVASGCTLGLGSQAAEASPFDPRPPPKSRRQPFFEGWFIRLVDHEQRLSFAVILGSFRSRGGTELDQHYVSLSYLHEPKGGLLPAEADNAEEPAELPKEKDKDGREETGDK----------------------------------------------------------GSSEGASVPGNRFLEWARDQRLKVLRGFGME-----GGSDAMVPSRKG---------------MGRKLDTGNVGQRGAAQTKAPRDESPSARREAIVEVDADIECATDEAKYSSDTV-------GQAASLLESGRDADVERGERHKKQRIGRRGWEYLRFERGVDVIEGPHAPTTLSRQAAADDR-NFGEMEDRSVHGVTIMDMATATGTDIVDNDA---GRPSGGTMHARGDSLG------QTSFPSHATTEVKGDTNGAPRNPNEDPITSRSRADATERTHTFHAFPPPETVTISRHGQPVVRMPNLRDDSSFTWEADGIGHFTVDGDTGHLSFQLPELSVAASFRNRSPWSRKRPNSAGPEGWLTRTGLLPLHYFVHSLGSETGYSLHTADAPRAVVGRGSLHMESNYGTSFPAGWIWAQGCSSTQGLCGRAFRDGEVVHDDGKDDSRGVGSDADQKAKLLEEGDVKGSPCTERAAQFVLTGGRFVIGPVTTKSFVMAFRSKRHHWDFRTTDLDRISVDVCRRESRVKIVARSWGDERVLEADIHAPEGSFGSAIYVPTPEGFSNAPGCIESYAATATFRLYTKGREGEGCVAHRFLVLREEVDFKLAALEFGGSYQDT 2682
MW +F ++V+SS + SLR G R S TN+T RT WS P A R SRG++ ++ S A VSP APGS +A++IG+++ G TL L EASPFDPRPPPKS RQPFFEGWFIRLVDHEQRLSFAVI+GSFR GG ELDQHYVSLSYLHEPKGGLLPAE + + +S RF +W R QRL VLR FG E GG + P KG +G D G G A R+E + + +++ E DE ++T + + G D D + G ++L + G +++ + RQA + E + V I++ T D +D A G P+ A +G Q S PS D G+ + + +T R +ATERTHTFHAFPP +TVTI G+PV +PNLRDD SFTWEADGIG F VDGDTG LSFQLPELSVAASFR R WS +RPNSAGPEGWL RTGLLPLHYFVHS+GSE GYSL APRAVVGRGS+HME+NYG SFP GW+WAQGCS+TQGLCG FRDGE+ + DG G A ++A + + G +FVLTGGRFVIGP+TT SFV+AFRS+RH W+FRTTDLDRI V R++ R+ +VA+SWGD RVL+ADI APEGSFGSAIYVPTP+GFSNAPGC+ESYAATA FRLYTKG + EG R LVLREEV+FKLAALEFGG YQDT
Sbjct: 1 MWDALFCTMLVLSSVRVGEGVGFTPGGKKMLRSLRGGARHGESGSSATNTTRRT----------------AWSPPWLARR--LSRGKKAKATSVLA-----PNKAARRVSP-APGSTFNSALAVMIGSVLLGGGTLSLSPTVVEASPFDPRPPPKSTRQPFFEGWFIRLVDHEQRLSFAVIIGSFRGHGGKELDQHYVSLSYLHEPKGGLLPAEEEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGXXXXXXXXXXXXXSAQVRSSEIAKRFSKWIRAQRLAVLREFGAEEEEGDGGLEDPGPLTKGESGAGAGQGGNQPREIGENSDEPTTGTDGDGGATAGREEREEPFDDTWPDEESEGEGQADEEVGEAETTPXXXXXXXXXEGIADQGIDEDQAESD-------GLESRDWLEGDGGRELMN-------VVRQAERSPLLRESDREATAARDVGIVETGR-TAVDAIDPGAAANGGPTDSAPEAEDSGVGADEPVVQRSSPSQELPSKLSDGRGS-GDASLKHVTPRD--EATERTHTFHAFPPADTVTILCRGEPVNGVPNLRDDPSFTWEADGIGSFAVDGDTGRLSFQLPELSVAASFRYRQAWSEERPNSAGPEGWLQRTGLLPLHYFVHSMGSEAGYSLKATGAPRAVVGRGSIHMEANYGESFPTGWVWAQGCSATQGLCGNVFRDGELTNPDGGSVQEGS---ARRRAAGGKADGLAGPKRDSATPRFVLTGGRFVIGPITTTSFVLAFRSERHKWNFRTTDLDRIVVTASRKDHRLTLVAKSWGDNRVLKADIRAPEGSFGSAIYVPTPDGFSNAPGCVESYAATARFRLYTKGDKLEGDGVTRPLVLREEVEFKLAALEFGGEYQDT 874
BLAST of mRNA_H-elongata_contig1553.3620.1 vs. uniprot
Match: D8LQ64_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQ64_ECTSI) HSP 1 Score: 572 bits (1475), Expect = 5.780e-187 Identity = 343/690 (49.71%), Postives = 418/690 (60.58%), Query Frame = 1
Query: 709 IRLVDHEQRLSFAVILGSFRSRGGTELDQHYVSLSYLHEPKGGLLPAEADN--AEEPAELPKEKDKDGREETGDKGSSEGASVPGNRFLEWARDQRLKVLRGFGME-----GGSD---AMVPSRKGMGR---------------KLDTGNVGQRGAAQTKAPRDESPSARREAIVEVDADIECATDEAKYSSDTVGQAASLLESGRDADVERGERHKKQRIGRRGWEYLRFERGVDVIE-------GPHAPTTLSRQAAADDRNFGEMEDRSVHGVTIMDMATATGTDIVDNDAGRPSGGTMHARGDSLGQTSFPSHATTEVKGDTNGAPRNPNEDPITSRSRADATERTHTFHAFPPPETVTISRHGQPVVRMPNLRDDSSFTWEADGIGHFTVDGDTGHLSFQLPELSVAASFRNRSPWSRKRPNSAGPEGWLTRTGLLPLHYFVHSLGSETGYSLHTADAPRAVVGRGSLHMESNYGTSFPAGWIWAQGCSSTQGLCGRAFRDGEVVHDDGKDDSRGVGSDADQKAKLLEEGDVKGSPCTERAAQFVLTGGRFVIGPVTTKSFVMAFRSKRHHWDFRTTDLDRISVDVCRRESRVKIVARSWGDERVLEADIHAPEGSFGSAIYVPTPEGFSNAPGCIESYAATATFRLYTKGREGEGCVAHRFLVLREEVDFKLAALEFGGSYQDT 2682
+RLVDHEQRLSFAVI+GSFR GG ELDQHYVSLSYLHEPKGGLLPAE +N EEP + +S RF +W R QRL VLR FG E GG + A+ G G + TG G GA A R+E + + E +++ + DE ++T + + + +D + + + + G ++L + G +++ G S + A R+ G +E V +D A D+ G + + Q S PS E+ +G + +ATERTHTFHAFPP +TVTI G+PV +PNLRDD SFTWEADGIG F VDGD G LSFQLPELSVAASFR R PWS +RPNSAGPEGWL RTGLLPLHYFV S+GSE GYSL APRAVVGRGS+HME+NYG SFP GW+WAQGCS+T+GLCG FRDGE+ + DG + A ++A + + GS +FVLTGGRFVIGP+TT SFV+AFRS+RH+W+FRTTDLDRI V R++ R+ +VA+SWGD RVL+ADI APEGSFGSAIYVPTPEGFSNAPGC+ESYAATA FRLYTKG + EG R LVLREEV+FKLAALEFGG YQDT
Sbjct: 27 LRLVDHEQRLSFAVIIGSFRGHGGKELDQHYVSLSYLHEPKGGLLPAEEENDPEEEPTAXXXXXXXXXXXXXXXXXAQARSSEIAKRFSKWIRAQRLAVLREFGAEEEESDGGLEDPGALTKGESGAGAVQGEDQSPETGENSAEPTTGTDGDDGAT---AGREEREEPFDDTLPEEESEGQGQGDEEVGEAETTPETETAPDREQDIADQGNDEDEAESDGLESRDWLEGDGGGELMNAVRKRQAGRSPLLRASDREATAARDVGMVETGRT-AVDAIDPGPAANEGPTDSAPEAEDSGV--GADEPVVQRSSPSQ---ELPSKLSGGGGSGGASLKHVTPHDEATERTHTFHAFPPADTVTILCRGEPVNGVPNLRDDPSFTWEADGIGSFAVDGDKGRLSFQLPELSVAASFRYRQPWSEERPNSAGPEGWLQRTGLLPLHYFVQSMGSEAGYSLKATGAPRAVVGRGSIHMEANYGESFPTGWVWAQGCSATKGLCGNVFRDGELTNPDGGSAQE---ASAGRRAAGGKADGLGGSKKDSATPRFVLTGGRFVIGPITTTSFVLAFRSERHNWNFRTTDLDRIVVTASRKDHRLTLVAKSWGDNRVLKADIRAPEGSFGSAIYVPTPEGFSNAPGCVESYAATARFRLYTKGDKLEGDGVTRPLVLREEVEFKLAALEFGGEYQDT 704
BLAST of mRNA_H-elongata_contig1553.3620.1 vs. uniprot
Match: A0A835Z7D9_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z7D9_9STRA) HSP 1 Score: 258 bits (658), Expect = 6.340e-73 Identity = 150/353 (42.49%), Postives = 196/353 (55.52%), Query Frame = 1
Query: 1636 SRADATERTHTFHAFPPPETVTISRHGQPVVRMPNLRDDSSFTWEADGIGHFTVDGDTGHLSFQLPELSVAASFRNRSPWSRKRPNSAGPEGWLTRTGLLPLHYFVHSLGSETGYSLHTA-DAPRAVVGRGSLHMESNYGTSFPAGWIWAQGCSSTQGLCGRAFRDGEVVHDDGKDDSRGVGSDADQKAKLLEEGDVKGSPCTERAAQFVLTGGRFVIGPVTTKSFVMAFRSKRHHWDFRTTDLDRIS-VDVCRRESRVKIVARSWGDERVLEAD--IHAPEGSFGSAIYVPTPEGFSNAPGCIESYAATATFRLYTKGREGEGCVAHRFLVLREEVDFKLAALEFGGSYQDT 2682
S D+ +THT++ FP P V+I +G P VR P+ +F W A G+G V ++G L F +PE SV A F R PWSR RPN GPEGWL TGLLPLHYFVHS GS Y D G G LHME NYG FP W+W QGCS + H G GS + GD+ P + FVLTGG+F IGP+T++++V+A R W+FRTTDLD ++ + + R+ +++ A S R+LE + APE SFG I VPT +G+S +PGC+ESY A A+FR Y K G+ L+L ++V LAA+EFGG+YQ T
Sbjct: 69 SYLDSKGKTHTYNFFPDPRAVSIDANGAPPVRRPSRSTPPNFRWSAAGVGELLVQPESGTLEFSVPEASVKAKFHGRIPWSRSRPNKDGPEGWLAGTGLLPLHYFVHSFGSAAEYEFEAKHDKAEKCSGSGRLHMECNYGDMFPHAWVWGQGCSRPPTM---------ATH-------LGDGS--------IGSGDI---PADFQQLSFVLTGGQFRIGPLTSQAWVIALRWGDEEWNFRTTDLDEVTTLQLSRKARAIRLRALSRCKTRLLEVRDVLVAPEHSFGKPIAVPTHKGWSTSPGCVESYNAAASFRCYHK-EHGQWQ-----LILEKQVP--LAAMEFGGAYQST 386
BLAST of mRNA_H-elongata_contig1553.3620.1 vs. uniprot
Match: A0A7S4PYL0_9DINO (Hypothetical protein n=1 Tax=Alexandrium monilatum TaxID=311494 RepID=A0A7S4PYL0_9DINO) HSP 1 Score: 187 bits (475), Expect = 2.450e-48 Identity = 115/311 (36.98%), Postives = 143/311 (45.98%), Query Frame = 1
Query: 1753 SSFTWEADGIGHFTVDGDTGHLSFQLPELSVAASFRNRSPWSRKRPNSAGPEGWLTRTGLLPLHYFVHSLGSETGYSLHTADAPRAVVGRGSLHMESNYGTSFPAGWIWAQGCSSTQGLCGRAFRDGEVVHDDGKDDSRGVGSDADQKAKLLEEGDVKGSPCTERAAQFVLTGGRFV-IGPVTTKSFVMAFRSKRHHWDFRTTDLDRISVDVCRRESRVKIVARSWGDERVLEADIHAPEGSFGSAIYVPTPEGFSNAPGCIESYAATATFRLYTKGREGEGCVAHRFLVLREEVDFKLAALEFGGSYQDT 2682
S+FTW + G V+ LSF L V A R PWS + P++AGPEGW+ R L HY+VHSL S Y+L T A+ GRG HME NYG +FP GWIW Q ++ G+ Q VLT GRF+ +GP+ + VMA+RS + HWDFRTTDLD I VAR W + L + AP GSF +Y PT GFS+ PGC ESY+A Y +G V E LAALEFGG+Y D+
Sbjct: 111 SNFTWRSTR-GELEVNDSAALLSFAFDSLHVRARLSARVPWSAEAPDAAGPEGWVRRLPALTCHYYVHSLASRAEYTL-TPAGGSAIEGRGHAHMEGNYGRTFPQGWIWLQAIGASGGV------------------------------------------------QVVLTAGRFLSLGPLGISAVVMAYRSPQLHWDFRTTDLDAICWRGSAAGGWFSAVARHWTRDEELRLTVQAPPGSFSDRLYFPTRSGFSDTPGCRESYSAVVDVVAYRRG------------VALERQRVPLAALEFGGTYLDS 359
BLAST of mRNA_H-elongata_contig1553.3620.1 vs. uniprot
Match: A0A812TWY2_9DINO (Hypothetical protein n=1 Tax=Symbiodinium sp. CCMP2592 TaxID=631055 RepID=A0A812TWY2_9DINO) HSP 1 Score: 171 bits (434), Expect = 1.280e-41 Identity = 106/310 (34.19%), Postives = 144/310 (46.45%), Query Frame = 1
Query: 1666 TFHAFPPPETVTISRHGQPVVRMPNLRDDSSFTWEADGIGHFTVDGDTGHLSFQLPE-LSVAASFRNRSPWSRKRPNSAGPEGWLTR--TGLLPLHYFVHSLGSETGYSLHTADAPRAVVGRGSLHMESNYGTSFPAGWIWAQGCSSTQGLCGRAFRDGEVVHDDGKDDSRGVGSDADQKAKLLEEGDVKGSPCTERAAQFVLTGGRFVIGPVTTKSFVMAFRSKRHHWDFRTTDLDRI--SVDVCRRESRVKIVARSWGDERVLEADIHAPEGSFGSAIYVPTPEGFSNAPGCIESYAATATFRLYTKG 2580
T FP +V I+ G PV R + F E++ +G V+ L F P L + AS NR PW ++ GPEGW R +GLLP HYFVHSLGS YS++ + G G H E+NYG+ FP+ W W QG S G +Q +LTGG F + +T + F++A+RS R HWDFR+ DLD I VD C + + + A R LE + AP G+F +Y PT EG+SN PG +ESY A A +++ +G
Sbjct: 78 TEQVFPAEASVRITDRGLPVDRELPRNQPAVFVVESE-VGRLAVNDSKAELLFNFPSGLRIEASLANRIPWDEACRDTCGPEGWAGRLPSGLLPTHYFVHSLGSTAVYSVN------GLRGSGFAHQEANYGSFFPSAWTWVQGISGDGG------------------------------------------------SQLLLTGGAFTVAELTARQFLLAYRSPRFHWDFRSVDLDHIVTQVDAC--QGLLTLRASKPLTGRQLELSVRAPLGTFSEPLYFPTREGWSNRPGSVESYRARALVKIFHRG 330
BLAST of mRNA_H-elongata_contig1553.3620.1 vs. uniprot
Match: A0A812QNU8_9DINO (Hypothetical protein n=1 Tax=Symbiodinium natans TaxID=878477 RepID=A0A812QNU8_9DINO) HSP 1 Score: 168 bits (425), Expect = 4.620e-41 Identity = 112/339 (33.04%), Postives = 158/339 (46.61%), Query Frame = 1
Query: 1666 TFHAFPPPETVTISRHGQPVVRMPNLRDDSSFTWEADGIGHFTVDGDTGHLSFQLPE-LSVAASFRNRSPWSRKRPNSAGPEGWLTR--TGLLPLHYFVHSLGSETGYSLHTADAPRAVVGRGSLHMESNYGTSFPAGWIWAQGCSSTQGLCGRAFRDGEVVHDDGKDDSRGVGSDADQKAKLLEEGDVKGSPCTERAAQFVLTGGRFVIGPVTTKSFVMAFRSKRHHWDFRTTDLDRI--SVDVCRRESRVKIVARSWGDERVLEADIHAPEGSFGSAIYVPTPEGFSNAPGCIESYAATATFRLYTKGREGEGCVAHRFLVLREEVDFKLAALEFGG 2667
T FP +V I+ G+PV + + F E++ IG F V+ L P L V AS NR PW ++ GPEGW R +GLLP HYFVHSLGS Y+++ + G G H E+NYG+ FP+ W W +G SS + ++Q +LTGG F + +T + F++A+RS R HWDFR+ ++D I VD CR S + + A R LE ++ A G+F +Y PT EG+SN PG +ESY A A +++ G C+ L R E +A + FGG
Sbjct: 77 TEQVFPSQSSVRITDRGRPVNKELPRSQPAIFEVESE-IGRFAVNDSKSELLLTFPSGLKVEASLDNRVPWDAACKDTCGPEGWAGRLPSGLLPTHYFVHSLGSTATYAVNE------LRGFGFAHQEANYGSFFPSAWTWVEGISS------------------------------------------------DGSSQLLLTGGAFTLAELTARQFLLAYRSPRFHWDFRSVNMDHIVAQVDACR--SLLVLSASRVLSGRRLELEVRAVPGTFSDPLYFPTREGWSNRPGSVESYRARAWVKVFQHGVLQARCLK---LSPRTEQRASVAGVLFGG 355
BLAST of mRNA_H-elongata_contig1553.3620.1 vs. uniprot
Match: A0A482SJ29_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SJ29_9ARCH) HSP 1 Score: 149 bits (377), Expect = 4.690e-35 Identity = 105/338 (31.07%), Postives = 144/338 (42.60%), Query Frame = 1
Query: 1669 FHAFPPPETVTISRHGQPVVRMPNLRDDSSFTWEADGIGHFTVDGDTGHLSFQLP-ELSVAASFRNRSPWS-RKRPNSAGPEGWLTRTGLLPLHYFVHSLGSETGYSLHTADAPRAVVGRGSLHMESNYGTSFPAGWIWAQGCSSTQGLCGRAFRDGEVVHDDGKDDSRGVGSDADQKAKLLEEGDVKGSPCTERAAQFVLTGGRFVIGPVTTKSFVMAFRSKRHHWD-FRTTDLDRISVDVCRRESRVKIVARSWGDERVLEADIHAPEGSFGSAIYVPTPEGFSNAPGCIESYAATATFRLYTKGREGEGCVAHRFLVLREEVDFKLAALEFGGSY 2673
FH+FP P +VT+S H + + TW+A+ +G+F + SF P S+ +R PW ++ GPEGWL T LLP HYFVHS+GS T Y LHT + + G G H+E N+GT FP GW WAQ +S A F L GRFVIGP + +M R + R+TD+DRI + +E + S + I + S +++PT GFS+ PGC+E+Y A A+ G E E +F L ALEFGGS+
Sbjct: 142 FHSFPDPSSVTVSEHKDSYLDI---------TWKANNVGYFQFNSTACAGSFTFPYNSSLQFESSSRIPWQPSEKIGFVGPEGWLGLTSLLPCHYFVHSVGSTTSYKLHTPNLGD-MEGVGYAHIEGNHGTFFPEGWTWAQAIASNN------------------------------------------------TASFSLVVGRFVIGPGAPMNSMMFLRRRNGKTAVIRSTDMDRIKYSLDGKERTAYVQGLSLIKGFQVRIAIRTTDDSA-HRVFIPTINGFSDQPGCVETYTAVASVVFQEVGME------------EEIYEFPLTALEFGGSF 408
BLAST of mRNA_H-elongata_contig1553.3620.1 vs. uniprot
Match: A0A0G4EZ58_VITBC (Uncharacterized protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4EZ58_VITBC) HSP 1 Score: 125 bits (315), Expect = 1.020e-25 Identity = 84/233 (36.05%), Postives = 113/233 (48.50%), Query Frame = 1
Query: 2005 RAVVGRGSLHMESNYGTSFPAGWIWAQGCSSTQGLCGRAFRDGEVVHDDGKDDSRGVGSDADQKAKLLEEGDVKGSPCTERAAQFVLTGGRFVIGPVTTKSFVMAFRSKRHHWDFRTTDLDRISVDVCRRESRVKIVARSWGDE----RVLEADIHAPEGSFGSA-IYVPTPEGFSNAPGCIESYAATATFRLYT----KGREGEGCVAHRFLVLREEVDFKLAALEFGGSYQ 2676
R ++GRGS H+E+N+G FP+GW WAQGC+ T + +VH D Q +LTGG F IGP++ S+V+A+RS WDFRTTDL R+ + + RV++V S D R L + AP SF I +PTPEGFS+ PGC+ES+ A A + + GR G L E+ L ALEFGG +Q
Sbjct: 538 RYILGRGSTHLEANWGDMFPSGWTWAQGCART--ALPPSPSPQPLVHSSSSSD-----------------------------VQLLLTGGIFRIGPISPLSWVVAYRSPFVQWDFRTTDLHRVEYAISSAQRRVRLVCESRPDRHGYYRRLMIALEAPLWSFTDPPISIPTPEGFSDRPGCVESHVARADVKAFLVNQEDGRSG----------LIEQRTVPLCALEFGGMFQ 729
BLAST of mRNA_H-elongata_contig1553.3620.1 vs. uniprot
Match: A0A7S0VYJ8_9CRYP (Hypothetical protein n=1 Tax=Hemiselmis tepida TaxID=464990 RepID=A0A7S0VYJ8_9CRYP) HSP 1 Score: 116 bits (291), Expect = 1.440e-25 Identity = 87/284 (30.63%), Postives = 124/284 (43.66%), Query Frame = 1
Query: 1843 VAASFRNRSPWSRKRPNSA-GPEGWLTRTGL-LPLHYFVHSLGSETGYSLHTADAPRAVVGRGSLHMESNYGTSFPAGWIWAQGCSSTQGLCGRAFRDGEVVHDDGKDDSRGVGSDADQKAKLLEEGDVKGSPCTERAAQFVLTGGRFVIGPVTTKSFVMAFRSKRHHWDFRTTDLD-RISVDVCRRESRVKIVARSWGDERVLEADIHAPEGSFGSA-IYVPTPEGFSNAPGCIESYAATATFRLYTKGREGEGCVAHRFLVLREEVDFKLAALEFGGSYQDT 2682
+ A+ R R W + RP GPEGWL+R G LP HY V S+ S+T Y + A G G H+E+NYG SFP GW + QG G A V+TGGRF IGP + ++++ R+ WDFRTTD+ R S + R+ + ++G + + E A G+F ++VPT GF+N+PGC E+++A + +GR LV V + LEFGG + T
Sbjct: 5 LRATMRGRRAWRQARPEGREGPEGWLSRFGFALPCHYAVQSVASQTEYHVSIPGVGEAH-GSGVSHVETNYGVSFPRGWCYLQGGGFELGR-----------------------------------------------ASLVVTGGRFSIGPASPMTWIVCLRAPGLEWDFRTTDVGTRFSHALSAGGGRLSLNGTAFGGKSI-EITAEAARGTFAEEDVWVPTAVGFTNSPGCAETFSAEVKCAVRERGR----------LVGAWRVP--MCVLEFGGEFLRT 227
BLAST of mRNA_H-elongata_contig1553.3620.1 vs. uniprot
Match: A0A7S0QBM1_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0QBM1_9EUKA) HSP 1 Score: 113 bits (282), Expect = 1.690e-25 Identity = 54/128 (42.19%), Postives = 73/128 (57.03%), Query Frame = 1
Query: 1723 VVRMPNLR------DDSSFTWEADGIGHFTVDGDTGHLSFQLPELSVAASFRN-RSPWSRKRPNSAGPEGWLTRTGLLPLHYFVHSLGSETGYSLHTADAPRAVVGRGSLHMESNYGTSFPAGWIWAQ 2085
+ R+P+L D W + G VDGD + ++ L +AA+ + R PWS P+ AGPEGWL RT LLP HYF+HS S T Y L + ++ GRG+ H+E NYG +FP GW+WAQ
Sbjct: 2 ISRLPHLSPRSGVASDPHLEWRSAANGGIVVDGDAAIIDVRVGPLRLAANLSSPRLPWSDAAPDRAGPEGWLGRTNLLPCHYFIHSFASPTSYHLERGRS--SLTGRGTSHLERNYGANFPTGWVWAQ 127 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig1553.3620.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig1553.3620.1 >prot_H-elongata_contig1553.3620.1 ID=prot_H-elongata_contig1553.3620.1|Name=mRNA_H-elongata_contig1553.3620.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=828bp MAQYTFKFTTMWAMIFSLLIVVSSRSDDPRTRMDSHAVSSVLSLRSGGRDback to top mRNA from alignment at H-elongata_contig1553:2836..8325+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig1553.3620.1 ID=mRNA_H-elongata_contig1553.3620.1|Name=mRNA_H-elongata_contig1553.3620.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=5490bp|location=Sequence derived from alignment at H-elongata_contig1553:2836..8325+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig1553:2836..8325+ >mRNA_H-elongata_contig1553.3620.1 ID=mRNA_H-elongata_contig1553.3620.1|Name=mRNA_H-elongata_contig1553.3620.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=4968bp|location=Sequence derived from alignment at H-elongata_contig1553:2836..8325+ (Himanthalia elongata Himel1 dioecious)back to top |