mRNA_H-elongata_contig15512.3612.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig15512.3612.1
Unique NamemRNA_H-elongata_contig15512.3612.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig15512.3612.1 vs. uniprot
Match: A0A6H5KCI8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCI8_9PHAE)

HSP 1 Score: 144 bits (362), Expect = 6.300e-38
Identity = 63/91 (69.23%), Postives = 79/91 (86.81%), Query Frame = 3
Query:    9 CDVVHTFRSQHPGTACVEIRRDQKLFVSGGWDHRVRAFSWRSPRPLAILRSHDGSVTSIAHSQRIGGFASGSADSRVALWNMFPD---GGG 272
            C+VV +FR +HPGT+CVEIRRDQKLFVSGGWDHRVRAFSW++PRPLA+LRSH+ +V ++A+S RIGG  SGS DSRVA+W ++P+   GGG
Sbjct:  335 CEVVKSFRLEHPGTSCVEIRRDQKLFVSGGWDHRVRAFSWKTPRPLAVLRSHEKNVHTVAYSPRIGGLVSGSGDSRVAVWELYPERNRGGG 425          
BLAST of mRNA_H-elongata_contig15512.3612.1 vs. uniprot
Match: A9NVL8_PICSI (Uncharacterized protein n=1 Tax=Picea sitchensis TaxID=3332 RepID=A9NVL8_PICSI)

HSP 1 Score: 82.8 bits (203), Expect = 2.120e-15
Identity = 34/76 (44.74%), Postives = 51/76 (67.11%), Query Frame = 3
Query:   39 HPGTACVEIRRDQKLFVSGGWDHRVRAFSWRSPRPLAILRSHDGSVTSIAHSQRIGGFASGSADSRVALWNMFPDG 266
            HPG + + IR D K+F + GWDHRVR + +   +PLAIL+ H  +VTS++ S+     AS S D+ +ALW+++P G
Sbjct:  368 HPGISDISIRIDSKIFATAGWDHRVRVYDYHKRKPLAILKYHSATVTSVSFSKDCKLIASSSEDATIALWSLYPPG 443          
BLAST of mRNA_H-elongata_contig15512.3612.1 vs. uniprot
Match: A0A1B0D102_PHLPP (Uncharacterized protein n=1 Tax=Phlebotomus papatasi TaxID=29031 RepID=A0A1B0D102_PHLPP)

HSP 1 Score: 79.3 bits (194), Expect = 1.760e-14
Identity = 35/80 (43.75%), Postives = 51/80 (63.75%), Query Frame = 3
Query:   36 QHPGTACVEIRRDQKLFVSGGWDHRVRAFSWRSPRPLAILRSHDGSVTSIAHSQ------RIGGFASGSADSRVALWNMF 257
            ++PG +C+ IR D+K+FVSGGWD R+R FSW+S RPLA+L  H  S++ +A S       R    A    D ++ LWN++
Sbjct:  235 KNPGVSCLRIRPDRKIFVSGGWDGRIRVFSWKSLRPLAVLTEHKKSISDVAFSPGRVELWRAPLMAIAGEDRQITLWNLY 314          
BLAST of mRNA_H-elongata_contig15512.3612.1 vs. uniprot
Match: B4H5A7_DROPE (GL10086 n=8 Tax=obscura group TaxID=32355 RepID=B4H5A7_DROPE)

HSP 1 Score: 79.0 bits (193), Expect = 2.610e-14
Identity = 37/81 (45.68%), Postives = 52/81 (64.20%), Query Frame = 3
Query:   36 QHPGTACVEIRRDQKLFVSGGWDHRVRAFSWRSPRPLAILRSH-DGSVTSIAHSQ------RIGGFASGSADSRVALWNMF 257
            ++PG  CV IR DQK+F SGGWD R+R FSW+S RPLA+L  H  G V  +A+SQ      R    A+   D +++LW+++
Sbjct:  242 KNPGVNCVRIRADQKVFASGGWDGRIRIFSWKSLRPLAVLTQHKQGGVMDLAYSQQPVAMWRAPIMAAAGMDGQISLWDLY 322          
BLAST of mRNA_H-elongata_contig15512.3612.1 vs. uniprot
Match: A0A4W6EMS2_LATCA (G protein subunit beta 1 like n=3 Tax=Carangaria TaxID=1489904 RepID=A0A4W6EMS2_LATCA)

HSP 1 Score: 78.6 bits (192), Expect = 3.770e-14
Identity = 38/82 (46.34%), Postives = 53/82 (64.63%), Query Frame = 3
Query:   39 HPGTACVEIRRDQKLFVSGGWDHRVRAFSWRSPRPLAILRSHDGSVTSIAHS------QRIGGFASGSADSRVALWNMFPDG 266
            +PG + + IR D KL  S GWDHRVR FSW+  RPLA+L+ H   V S+A S      QR+   A+GS D R++LW+++ +G
Sbjct:  245 NPGVSQLCIREDGKLLASAGWDHRVRVFSWKKLRPLAVLQYHTDMVLSVAFSDHQDPKQRL--LAAGSKDQRISLWSIYNEG 324          
BLAST of mRNA_H-elongata_contig15512.3612.1 vs. uniprot
Match: A0A1A8MUT0_9TELE (Guanine nucleotide binding protein (G protein), beta polypeptide 1-like (Fragment) n=3 Tax=Nothobranchius TaxID=28779 RepID=A0A1A8MUT0_9TELE)

HSP 1 Score: 76.6 bits (187), Expect = 9.340e-14
Identity = 37/84 (44.05%), Postives = 53/84 (63.10%), Query Frame = 3
Query:   39 HPGTACVEIRRDQKLFVSGGWDHRVRAFSWRSPRPLAILRSHDGSVTSIAHS------QRIGGFASGSADSRVALWNMFPDGGG 272
            +PG + + IR D ++  S GWD RVR FSW+  RPLA+L+ H   V S+A S      QR+   A+GS D R++LW+++ DG G
Sbjct:  178 NPGVSQLCIREDGRILASAGWDDRVRIFSWKKLRPLAVLQYHTDMVLSVAFSDHQDPRQRL--LAAGSKDQRISLWSIYNDGAG 259          
BLAST of mRNA_H-elongata_contig15512.3612.1 vs. uniprot
Match: A0A6F9DXG7_9ASCI (WD repeat-containing protein 38 n=1 Tax=Phallusia mammillata TaxID=59560 RepID=A0A6F9DXG7_9ASCI)

HSP 1 Score: 74.7 bits (182), Expect = 1.080e-13
Identity = 31/82 (37.80%), Postives = 57/82 (69.51%), Query Frame = 3
Query:   24 TFRSQHPGTACVEIRRDQKLFVSGGWDHRVRAFSWRSPRPLAILRSHDGSVTSIAHS-QRIGG---FASGSADSRVALWNMF 257
            ++   +PG A V++R D K+F +GGWD+++R FSW+S +PLA+L  H G++ ++A S   I G    A G+ D+++++W+++
Sbjct:   89 SYELPNPGIASVKVRSDSKIFATGGWDYKLRIFSWKSCKPLAVLEYHKGTLQALAFSGPSINGKQLLACGANDTKISIWDVY 170          
BLAST of mRNA_H-elongata_contig15512.3612.1 vs. uniprot
Match: A0A1I8MPP1_MUSDO (Uncharacterized protein n=1 Tax=Musca domestica TaxID=7370 RepID=A0A1I8MPP1_MUSDO)

HSP 1 Score: 77.0 bits (188), Expect = 1.350e-13
Identity = 37/81 (45.68%), Postives = 53/81 (65.43%), Query Frame = 3
Query:   36 QHPGTACVEIRRDQKLFVSGGWDHRVRAFSWRSPRPLAILRSH-DGSVTSIAHSQ------RIGGFASGSADSRVALWNMF 257
            ++PG  C++IR DQK+F +GGWD RVR FSW+S RPLA+L  H  G++  IA+S       R    A    DS+++LWN++
Sbjct:  246 KNPGLNCLKIRNDQKVFSAGGWDGRVRIFSWKSLRPLAVLTEHKSGAIMDIAYSTGPVAMWRAPIMAVAGMDSQISLWNIY 326          
BLAST of mRNA_H-elongata_contig15512.3612.1 vs. uniprot
Match: A0A1A8UH36_NOTFU (G protein subunit beta 1 like n=6 Tax=Nothobranchiidae TaxID=405002 RepID=A0A1A8UH36_NOTFU)

HSP 1 Score: 77.0 bits (188), Expect = 1.360e-13
Identity = 37/84 (44.05%), Postives = 54/84 (64.29%), Query Frame = 3
Query:   39 HPGTACVEIRRDQKLFVSGGWDHRVRAFSWRSPRPLAILRSHDGSVTSIAHS------QRIGGFASGSADSRVALWNMFPDGGG 272
            +PG + + IR D ++  S GWD RVR FSW++ RPLA+L+ H   V S+A S      QR+   A+GS D R++LW+++ DG G
Sbjct:  245 NPGVSQLCIREDGRILASAGWDDRVRIFSWKTLRPLAVLQYHTDMVLSVAFSDHQDPRQRL--LAAGSKDQRISLWSIYNDGAG 326          
BLAST of mRNA_H-elongata_contig15512.3612.1 vs. uniprot
Match: A0A1L8DM75_9DIPT (Putative g-protein beta subunit-like protein gnb1l (Fragment) n=2 Tax=Nyssomyia neivai TaxID=330878 RepID=A0A1L8DM75_9DIPT)

HSP 1 Score: 77.0 bits (188), Expect = 1.490e-13
Identity = 35/80 (43.75%), Postives = 51/80 (63.75%), Query Frame = 3
Query:   36 QHPGTACVEIRRDQKLFVSGGWDHRVRAFSWRSPRPLAILRSHDGSVTSIAHSQ------RIGGFASGSADSRVALWNMF 257
            ++PG +C+ IR D+K+FVSGGWD RVR FSW+S RPLA+L  H  ++  IA S       +    A    DS++ LW+++
Sbjct:  260 KNPGVSCLRIRPDRKIFVSGGWDGRVRVFSWKSLRPLAVLTEHKKNILDIAFSPGPVDLWKAPLMAIAGEDSQITLWDLY 339          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig15512.3612.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KCI8_9PHAE6.300e-3869.23Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A9NVL8_PICSI2.120e-1544.74Uncharacterized protein n=1 Tax=Picea sitchensis T... [more]
A0A1B0D102_PHLPP1.760e-1443.75Uncharacterized protein n=1 Tax=Phlebotomus papata... [more]
B4H5A7_DROPE2.610e-1445.68GL10086 n=8 Tax=obscura group TaxID=32355 RepID=B4... [more]
A0A4W6EMS2_LATCA3.770e-1446.34G protein subunit beta 1 like n=3 Tax=Carangaria T... [more]
A0A1A8MUT0_9TELE9.340e-1444.05Guanine nucleotide binding protein (G protein), be... [more]
A0A6F9DXG7_9ASCI1.080e-1337.80WD repeat-containing protein 38 n=1 Tax=Phallusia ... [more]
A0A1I8MPP1_MUSDO1.350e-1345.68Uncharacterized protein n=1 Tax=Musca domestica Ta... [more]
A0A1A8UH36_NOTFU1.360e-1344.05G protein subunit beta 1 like n=6 Tax=Nothobranchi... [more]
A0A1L8DM75_9DIPT1.490e-1343.75Putative g-protein beta subunit-like protein gnb1l... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig15512contigH-elongata_contig15512:4380..5129 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size518
Cds size510
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig15512.3612.1prot_H-elongata_contig15512.3612.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig15512 4380..5122 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929914.8394275-CDS-H-elongata_contig15512:4379..47871622929914.8394275-CDS-H-elongata_contig15512:4379..4787Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15512 4380..4787 -
1691679206.7057407-CDS-H-elongata_contig15512:4379..47871691679206.7057407-CDS-H-elongata_contig15512:4379..4787Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15512 4380..4787 -
1622929914.8564475-CDS-H-elongata_contig15512:5020..51221622929914.8564475-CDS-H-elongata_contig15512:5020..5122Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15512 5021..5122 -
1691679206.7148347-CDS-H-elongata_contig15512:5020..51221691679206.7148347-CDS-H-elongata_contig15512:5020..5122Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15512 5021..5122 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929914.8729494-UTR-H-elongata_contig15512:5122..51291622929914.8729494-UTR-H-elongata_contig15512:5122..5129Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig15512 5123..5129 -
1691679206.7249773-UTR-H-elongata_contig15512:5122..51291691679206.7249773-UTR-H-elongata_contig15512:5122..5129Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig15512 5123..5129 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig15512.3612.1

>prot_H-elongata_contig15512.3612.1 ID=prot_H-elongata_contig15512.3612.1|Name=mRNA_H-elongata_contig15512.3612.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=170bp
MRRGPHLPFPAPGNRVCRDPSGSETVRVWGLGSQGEGVQLEKSATPGYPQ
VPRRERDEHRAQPTDRRLRIGLRGLSRGTLEHVSRRRRVNSTGSFRPCVE
VMNMMLQFFGDYPSYALGLEYCMSEKKFGGGVTSELCTPLFCGGRGSEMF
RLLAERIAIAGRIFGGFDCV
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mRNA from alignment at H-elongata_contig15512:4380..5129-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig15512.3612.1 ID=mRNA_H-elongata_contig15512.3612.1|Name=mRNA_H-elongata_contig15512.3612.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=750bp|location=Sequence derived from alignment at H-elongata_contig15512:4380..5129- (Himanthalia elongata Himel1 dioecious)
AGAGTTTATGCGACGTGGTCCACACCTTCCGTTCCCAGCACCCGGGAACC GCGTGTGTCGAGATCCGTCGGGATCAGAAACTGTTCGTGTCTGGGGGCTG GGATCACAGGTGGCACATTATCATGCGTGACCTCGGCTGACCACACCTAG CCGAAAGCCATACTTTCTCCTGAAGACATTACTCTCGCGTGTTGCCTGGT GCGTATCATGATGCCCTTCACTGCCCGATATCGTATCCAATCCGCGTGTC AGAACAAACGGAACAGTTCCGATGTTGTCTCATCCAACCCTTTCCCTCTG CCCGTTCATACGTTCGTCAACGGCGTGACGTCATATGGCCAGGGTGAGGG CGTTCAGCTGGAGAAGTCCGCGACCCCTGGCTATCCTCAGGTCCCACGAC GGGAGCGTGACGAGCATCGCGCACAGCCAACGGATCGGCGGCTTCGCATC GGGCTCCGCGGACTCTCGCGTGGCACTTTGGAACATGTTTCCCGACGGCG GAGGGTAAATAGTACTGGTTCCTTTAGACCCTGTGTGGAGGTGATGAACA TGATGTTGCAGTTTTTCGGGGATTATCCATCCTATGCTTTGGGACTCGAA TACTGTATGTCGGAGAAGAAGTTCGGTGGTGGCGTGACGAGCGAGTTATG CACGCCATTATTTTGCGGAGGTCGCGGCAGTGAAATGTTTAGATTATTGG CCGAAAGAATCGCCATAGCAGGCAGGATCTTCGGAGGGTTTGATTGTGTC
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Coding sequence (CDS) from alignment at H-elongata_contig15512:4380..5129-

>mRNA_H-elongata_contig15512.3612.1 ID=mRNA_H-elongata_contig15512.3612.1|Name=mRNA_H-elongata_contig15512.3612.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1020bp|location=Sequence derived from alignment at H-elongata_contig15512:4380..5129- (Himanthalia elongata Himel1 dioecious)
ATGCGACGTGGTCCACACCTTCCGTTCCCAGCACCCGGGAACCGCGTGTG
TCGAGATCCGTCGGGATCAGAAACTGTTCGTGTCTGGGGGCTGGGATCAC
AGATGCGACGTGGTCCACACCTTCCGTTCCCAGCACCCGGGAACCGCGTG
TGTCGAGATCCGTCGGGATCAGAAACTGTTCGTGTCTGGGGGCTGGGATC
ACAGGGTGAGGGCGTTCAGCTGGAGAAGTCCGCGACCCCTGGCTATCCTC
AGGTCCCACGACGGGAGCGTGACGAGCATCGCGCACAGCCAACGGATCGG
CGGCTTCGCATCGGGCTCCGCGGACTCTCGCGTGGCACTTTGGAACATGT
TTCCCGACGGCGGAGGGTAAATAGTACTGGTTCCTTTAGACCCTGTGTGG
AGGTGATGAACATGATGTTGCAGTTTTTCGGGGATTATCCATCCTATGCT
TTGGGACTCGAATACTGTATGTCGGAGAAGAAGTTCGGTGGTGGCGTGAC
GAGCGAGTTATGCACGCCATTATTTTGCGGAGGTCGCGGCAGTGAAATGT
TTAGATTATTGGCCGAAAGAATCGCCATAGCAGGCAGGATCTTCGGAGGG
TTTGATTGTGTCGGTGAGGGCGTTCAGCTGGAGAAGTCCGCGACCCCTGG
CTATCCTCAGGTCCCACGACGGGAGCGTGACGAGCATCGCGCACAGCCAA
CGGATCGGCGGCTTCGCATCGGGCTCCGCGGACTCTCGCGTGGCACTTTG
GAACATGTTTCCCGACGGCGGAGGGTAAATAGTACTGGTTCCTTTAGACC
CTGTGTGGAGGTGATGAACATGATGTTGCAGTTTTTCGGGGATTATCCAT
CCTATGCTTTGGGACTCGAATACTGTATGTCGGAGAAGAAGTTCGGTGGT
GGCGTGACGAGCGAGTTATGCACGCCATTATTTTGCGGAGGTCGCGGCAG
TGAAATGTTTAGATTATTGGCCGAAAGAATCGCCATAGCAGGCAGGATCT
TCGGAGGGTTTGATTGTGTC
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