mRNA_H-elongata_contig15509.3610.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig15509.3610.1 vs. uniprot
Match: D8LDM2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LDM2_ECTSI) HSP 1 Score: 402 bits (1034), Expect = 2.630e-132 Identity = 231/318 (72.64%), Postives = 258/318 (81.13%), Query Frame = 1
Query: 1 RSYSSPSRXXXXXXXXXXXXXXXXGG-STTVVPVXXXXXXXXMG----SPFGFSPFXXXXXXXXXXXPGVSFYGGGFGVNPVDLLVLGGVAYGVTQLVKGGGPSFGNLDGLQPSSLGEGVDVLKLQVALNCRDRSRNSILGVLDEISSRGDTETRSGLAEVVSEVGLALARRSTDWMASASALEHFNNRNAERAEATFSQYTVQVRTKIERETKVMIGGRNVSSGRYGEAP--QGGPTVAVVTLVLALRGDSLKKLGLDRGVSSISGVRMALEAIASGSLTDGGDNVLAAEVLWTPEEPSEVLTREDVVVDFPELIDL 933
RS+SSPSR GG STTVVP XXXXXXXX SPFGFSPF PGVSFYGGGFGVNPVDLLVLGGVAYGV+QLVKGGG SFGNLD PSSLGEGVDVLKLQVA+NCRDRS NSILGVL+++SSRGDTE+RSGLAEVVSEV LALARRS DW+ASAS LEHFNNRN ERAEATFSQY++Q+RTKIERET +IGG+N+S+ R G GGPTVAVV+LV+ALRGD++K+LGLDR VS+ISG++ AL+ IASGSL+DGGDNVLAAEVLWTPEEP EVLTRED + DFPEL+DL
Sbjct: 102 RSFSSPSRSYSAPSAPSRSYAPSYGGGSTTVVPXXXXXXXXXXXXXXXSPFGFSPFGR---------PGVSFYGGGFGVNPVDLLVLGGVAYGVSQLVKGGGTSFGNLDDSPPSSLGEGVDVLKLQVAINCRDRSSNSILGVLEDVSSRGDTESRSGLAEVVSEVSLALARRSLDWVASASELEHFNNRNVERAEATFSQYSIQLRTKIERETNAVIGGKNISAERSGGGGIGSGGPTVAVVSLVVALRGDAMKRLGLDRSVSNISGLKTALQTIASGSLSDGGDNVLAAEVLWTPEEPWEVLTREDAIADFPELMDL 410
BLAST of mRNA_H-elongata_contig15509.3610.1 vs. uniprot
Match: A0A835ZEJ7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZEJ7_9STRA) HSP 1 Score: 206 bits (525), Expect = 5.920e-57 Identity = 124/243 (51.03%), Postives = 160/243 (65.84%), Query Frame = 1
Query: 229 VDLLVLGGVAYGVTQL----VKGGGPSFGNLDGLQPSSLGEGVDVLKLQVALNCRDRSRNSILGVLDEISSRGDTETRSGLAEVVSEVGLALARRSTDWMASASALEHFNNRNAERAEATFSQYTVQVRTKIERETKVMIGGRNVSSGRY--GEAPQ--GGPTVAVVTLVLALRGDSLKKLGLDRGVSSISGVRMALEAIASGSLTDGGDNVLAAEVLWTPEEPSEVLTREDVVVDFPELIDL 933
V+LL++GGV +QL V GG S +++G SLG GV V+KLQVALN DRS IL L I+ R +T +R GL+ VSEV LAL RR DW+ASAS E+F R+AERAEA F+ Y + RTK+ERET GG ++S R G P+ G PT AVVT+VLAL+G+SLK+ L+R ++S S +R L +A + TD G+NVL E+LWTPEEP E L R+ V+ DFPEL+DL
Sbjct: 160 VNLLLVGGVVLTASQLLRTQVSSGGWSSVDVEG---GSLGRGVGVVKLQVALNASDRSSRGILAQLKSIAERAETSSRGGLSTAVSEVCLALVRRQPDWIASASQYEYFAPRSAERAEAVFNTYAIAERTKVERETVSRFGGEDLSDSRRSDGVRPEDLGKPTQAVVTIVLALKGESLKRFQLERSINSASALRNVLTQVAGDATTDDGENVLGVELLWTPEEPWESLDRQAVLEDFPELMDL 399
BLAST of mRNA_H-elongata_contig15509.3610.1 vs. uniprot
Match: A0A7S2XX02_9STRA (Hypothetical protein (Fragment) n=2 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XX02_9STRA) HSP 1 Score: 188 bits (477), Expect = 2.840e-50 Identity = 116/243 (47.74%), Postives = 160/243 (65.84%), Query Frame = 1
Query: 211 GFGV---NPVDLLVLGGVAYGVTQLVKG--GGPSFGNLDGLQ-PSSLGEGVDVLKLQVALNCRDRSRNSILGVLDEISSRGDTETRSGLAEVVSEVGLALARRSTDWMASASALEHFNNRNAERAEATFSQYTVQVRTKIERETKVMIGGRNVSSGRYGE----APQGGPTVAVVTLVLALRGDSLKKLGLDRGVSSISGVRMALEAIASGSLTDGGDNVLAAEVLWTPEEPSEVLTREDVVV 909
GFGV NP++ +VLG VAYGV ++ G +G LD + PSSLG+GV VLK Q+ALN +DR+ S+L L +S T +R GL+ VVSEV L L RRS +W A AS L++F R+A +AE+ F + + R+K+++E+ + G +S G + A G T+AVVT+ LALRGDSLK GV++IS + AL AI++ TDGG+NVLAAEVLWTPE PSEVL+++DV++
Sbjct: 144 GFGVSYFNPINAIVLGAVAYGVISIIGGLTSSGQWGTLDDEEGPSSLGQGVSVLKFQLALNVKDRTAMSLLNDLRVVSESSSTSSRFGLSNVVSEVALTLLRRSAEWEAVASELQYFGPRDASKAESAFGRISTGERSKVQQESGQVDG---MSVGGFANQKVGAGDGDATLAVVTIALALRGDSLKSFD---GVNNISQAQAALRAISADVATDGGENVLAAEVLWTPENPSEVLSKQDVIM 380
BLAST of mRNA_H-elongata_contig15509.3610.1 vs. uniprot
Match: H6WBA9_VAULI (Uncharacterized protein n=1 Tax=Vaucheria litorea TaxID=109269 RepID=H6WBA9_VAULI) HSP 1 Score: 183 bits (464), Expect = 5.780e-49 Identity = 105/244 (43.03%), Postives = 156/244 (63.93%), Query Frame = 1
Query: 214 FGVNPVDLLVLGGVAYGVTQLVKGGGP----SFGNLDGLQPSSLGEGVDVLKLQVALNCRDRSRNSILGVLDEISSRGDTETRSGLAEVVSEVGLALARRSTDWMASASALEHFNNRNAERAEATFSQYTVQVRTKIERETKVMIGGRNVSSGRYGEAPQGGPTVAVVTLVLALRGDSLKKLGLDRGVSSISGVRMALEAIASGSLTDGGDNVLAAEVLWTPEEPSEVLTREDVVVDFPELIDL 933
F + VD+ ++G V + ++Q++ G +GN D SSLG GV VLKLQ+ L+C+DR+ N +LG + I+ T +GL+ + SE LAL R S +W++++S E+F+ RN+ +AE+ F+ Y+V R+K E+ET N S G PT AVV+LVLA+ G++L+ LD+ V+S+S ++ AL I+S SLTD G NVLAAE++WTPE+ EVL RE ++ DFPEL+DL
Sbjct: 101 FAPSLVDVAIVGVVIFAISQVLNSGSSLTQNRWGNFDDDYFSSLGNGVSVLKLQICLDCKDRTENGVLGQIRNIAQ---TSQNTGLSYMTSEACLALLRNSDNWISASSKFEYFDPRNSNKAESAFNAYSVAERSKFEKETT-----ENFSQNEIGV-----PTKAVVSLVLAINGETLRPFDLDKSVNSVSALKNALSKISSDSLTDDGMNVLAAELIWTPEDAREVLDRESIIQDFPELMDL 331
BLAST of mRNA_H-elongata_contig15509.3610.1 vs. uniprot
Match: A0A7S2UEM4_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UEM4_9STRA) HSP 1 Score: 136 bits (342), Expect = 2.110e-32 Identity = 82/215 (38.14%), Postives = 129/215 (60.00%), Query Frame = 1
Query: 292 PSFGNLDGLQPSSLGEGVDVLKLQVALNCRDRSRNSILGVLD-EISSRGDTETRSGLAEVVSEVGLALARRSTDWMASASALEHFNNRNAERAEATFSQYTVQVRTKIERETKVMIGGRNVSSGRYGEAPQGGPTVAVVTLVLALRGDSLKKLGLDRGVSSISGVRMALEAIASGSLTDGGDNVLAAEVLWTPEEPSEVLTREDVVVDFPELIDL 933
P FG + + LG+G+ + K+QVALN RDR SI +L+ + +S GD+ ++ LA + +EV LAL R+S +W+ + S + F+ ++A +AE ++ ++ + K E+E + + GGPT+ VV+LVL ++GD+ K D SISG R + ++AS S+ DGG + AAEV WTP E EVLT DV++DFPE++D+
Sbjct: 77 PMFGKMFE-ESGPLGKGITIGKVQVALNARDRGAGSIFDLLESKAASSGDSPSQVQLARLTNEVCLALLRKSDEWVGACSESKWFSQKDAGKAEGLYNDWSNKEAAKFEKE---------YVPDKDSDVKPGGPTIVVVSLVLEIQGDTTK---FDGAGFSISGTREVVSSVASDSMVDGGYCLNAAEVFWTPGERDEVLTSRDVILDFPEIVDM 278
BLAST of mRNA_H-elongata_contig15509.3610.1 vs. uniprot
Match: A0A6U4YZC0_HEMAN (Hypothetical protein n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A6U4YZC0_HEMAN) HSP 1 Score: 134 bits (336), Expect = 1.490e-30 Identity = 88/243 (36.21%), Postives = 136/243 (55.97%), Query Frame = 1
Query: 214 FGVNPVDLLVLGGVAYGVTQLVKGGGPSFGNLDGLQPSSLGEGVDVLKLQVALNCRDRSRNSILGVLDEISSRGDTETRSGLAEVVSEVGLALARRSTDWMASASALEHFNNRNAERAEATFSQYTVQVRTKIERETKVMIGGRNVSSGRYGEAPQ---GGPTVAVVTLVLALRGDSLKKLGLDRGVSSISGVRMALEAIASGSLTDGGDNVLAAEVLWTPEEPSEVLTREDVVVDFPELIDL 933
FG + L+++G + + T L G G E + V K+QVA NC DR NS+LGV+ ++ DT+ LA +VS+V LAL R+ DW++ + +E + EATFSQ +++ R KIERET + G + S R GE G T AV+TL+L L+G + + + ++ +R +L ++ GS G D++LAAEV+WTPEEP E +T ++V++D+P+ I L
Sbjct: 169 FGPSFGSLVLVGSMLFMATSLFGGWG-----------QDEEEALSVCKVQVATNCPDRGPNSVLGVIARLADEVDTDDEDSLASMVSDVALALLRKEGDWIS--AKIESVDXXXXXXXEATFSQMSLKERAKIERETINRVRGNDKSDAREGEGKLEDIGKATSAVITLILCLQGRKIPE------ANDMASLRKSLSSV--GSDVVGNDSLLAAEVMWTPEEPWETMTPDEVILDYPDHIPL 390
BLAST of mRNA_H-elongata_contig15509.3610.1 vs. uniprot
Match: L1J5N6_GUITC (Uncharacterized protein n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1J5N6_GUITC) HSP 1 Score: 123 bits (308), Expect = 1.690e-27 Identity = 85/250 (34.00%), Postives = 142/250 (56.80%), Query Frame = 1
Query: 214 FGVNP-------VDLLVLGGVAYGVTQLVKGGGPSFGNLDGLQPSSLGEGVDVLKLQVALNCRDRSRNSILGVLDEISSRGDTETRSGLAEVVSEVGLALARRSTDWMASASALEHFNNRNAERAEATFSQYTVQVRTKIERETKVMIGGRNVSSGRYGEAPQ---GGPTVAVVTLVLALRGDSLKKLGLDRGVSSISGVRMALEAIASGSLTDGGDNVLAAEVLWTPEEPSEVLTREDVVVDFPELIDL 933
FGV P D++V+GGVAY G ++ + + G+++ K+QVA+ C +R NS+LG + ++ D+ ++ +A +VS+V LAL RR DW++ +A+E ++ E FSQ + R K+ERET ++ G++ S R E G T+AV+T+V+A+ G KKL R S+ + AL ++ + +L + D+++AAE+LW PEEP E LT +DV++++P L+ L
Sbjct: 74 FGVRPFFYGPLLTDVVVIGGVAYA-------GAMAYNMFENARQGRT-SGINIAKVQVAVCCDNRGPNSLLGTVARLARDCDSRSQRSMASLVSDVSLALLRREVDWVS--AAVETKTVKDITEGENIFSQMSFTERAKVERETFNLVAGKDKSEARSSETKLEDIGKSTMAVITMVVAMEG---KKLPEIRDSKSL---KEALMSLGTEALNE--DSLVAAELLWVPEEPWESLTADDVILEYPNLLSL 305
BLAST of mRNA_H-elongata_contig15509.3610.1 vs. uniprot
Match: B7FQ47_PHATC (Predicted protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7FQ47_PHATC) HSP 1 Score: 121 bits (303), Expect = 7.010e-27 Identity = 79/232 (34.05%), Postives = 128/232 (55.17%), Query Frame = 1
Query: 244 LGGVAYGVTQLVKGGGPSFGNLDGL--QPSSLGEGVDVLKLQVALNCRDRSRNSILGVLDEISSRGDTETRSGLAEVVSEVGLALARRSTDWMASASALEHFNNRNAERAEATFSQYTVQVRTKIERETKVMIGGRNVSSGRYGEAPQGGPTVAVVTLVLALRGDSLKKLGLDRGVSSISGVRMALEAIASGSLTDGGDNVLAAEVLWTPEEPSEVLTREDVVVDFPELIDL 933
LGG++ TQ++ PSF D + LG+G+ V K+QVAL DRS +SILG+L+ +R D ++ GLA +V +AL R+ DW+ + S + F ++ +AE+TF+ + + K E+E + GG T VV++++ ++GD+ + D + + L IAS + + GDNV A E+ WTP +P EVL++ D+++DFPELID+
Sbjct: 86 LGGISR-KTQII----PSFHMFDKVFEDEGPLGKGITVGKIQVALTAGDRSPSSILGLLER-KARADDDSSYGLARSAYDVCMALLRKEDDWVGACSQSQWFKGGDSGKAESTFNTWADKEGAKFEKE---------YIPESSNDDKVGGSTTVVVSMIIEIQGDATE---FDGAGYTREATKKVLSNIASDCMVEEGDNVNAVEIFWTPSDPEEVLSKNDMIIDFPELIDM 299
BLAST of mRNA_H-elongata_contig15509.3610.1 vs. uniprot
Match: A0A1E7F7B5_9STRA (Uncharacterized protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7F7B5_9STRA) HSP 1 Score: 117 bits (292), Expect = 2.070e-26 Identity = 76/201 (37.81%), Postives = 117/201 (58.21%), Query Frame = 1
Query: 331 LGEGVDVLKLQVALNCRDRSRNSILGVLDEISSRGDTETRSGLAEVVSEVGLALARRSTDWMASASALEHFNNRNAERAEATFSQYTVQVRTKIERETKVMIGGRNVSSGRYGEAPQGGPTVAVVTLVLALRGDSLKKLGLDRGVSSISGVRMALEAIASGSLTDGGDNVLAAEVLWTPEEPSEVLTREDVVVDFPELIDL 933
LG+G+ V K+QVAL DRS SI G+L++ ++ D++ LA + ++V L+L R+S DW+++ S + F+ ++A +AE +++ + K E+E V GGPT+ VV+LVL ++GDS K D SI + L +IAS +L D G V A E LWTP + EVL++ D+ +DFPELID+
Sbjct: 15 LGKGITVGKVQVALQSPDRSDTSIFGLLEDHANL-DSDENEDLARLANDVCLSLMRKSDDWVSACSTGKWFSEKDAGKAERYYNELSNAEAAKFEKEYIPDEDDEEV----------GGPTLVVVSLVLEIQGDSTK---FDGAGYSIGQTKEVLSSIASDALIDDGYCVNAFEALWTPSDRKEVLSKNDITIDFPELIDV 201
BLAST of mRNA_H-elongata_contig15509.3610.1 vs. uniprot
Match: A0A7S4P475_GUITH (Hypothetical protein n=1 Tax=Guillardia theta TaxID=55529 RepID=A0A7S4P475_GUITH) HSP 1 Score: 121 bits (304), Expect = 3.060e-26 Identity = 81/237 (34.18%), Postives = 138/237 (58.23%), Query Frame = 1
Query: 232 DLLVLGGVAYGVTQLVKGGGPSFGNLDGLQPSSLGEGVDVLKLQVALNCRDRSRNSILGVLDEISSRGDTETRSGLAEVVSEVGLALARRSTDWMASASALEHFNNRNAERAEATFSQYTVQVRTKIERETKVMIGGRNVSSGRYGEAPQ---GGPTVAVVTLVLALRGDSLKKLGLDRGVSSISGVRMALEAIASGSLTDGGDNVLAAEVLWTPEEPSEVLTREDVVVDFPELIDL 933
D++V+GGVAY G ++ + + G+++ K+QVA+ C +R NS+LG + ++ D+ ++ +A +VS+V LAL RR DW++ +A+E ++ E FSQ + R K+ERET ++ G++ S R E G T+AV+T+V+A+ G KKL R S+ + AL ++ + +L + D+++AAE+LW PEEP E LT +DV++++P L+ L
Sbjct: 178 DVVVIGGVAYA-------GAMAYNMFENARQGRT-SGINIAKVQVAVCCDNRGPNSLLGTVARLARDCDSRSQRSMASLVSDVSLALLRREVDWVS--AAVETKTVKDITEGENIFSQMSFTERAKVERETFNLVAGKDKSEARSSETKLEDIGKSTMAVITMVVAMEG---KKLPEIRDSKSL---KEALMSLGTEALNE--DSLVAAELLWVPEEPWESLTADDVILEYPNLLSL 396 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig15509.3610.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig15509.3610.1 >prot_H-elongata_contig15509.3610.1 ID=prot_H-elongata_contig15509.3610.1|Name=mRNA_H-elongata_contig15509.3610.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=271bp MGSPFGFSPFGSPFGFSPFGTPGVSFYGGGFGVNPVDLLVLGGVAYGVTQback to top mRNA from alignment at H-elongata_contig15509:2412..6428- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig15509.3610.1 ID=mRNA_H-elongata_contig15509.3610.1|Name=mRNA_H-elongata_contig15509.3610.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=4017bp|location=Sequence derived from alignment at H-elongata_contig15509:2412..6428- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig15509:2412..6428- >mRNA_H-elongata_contig15509.3610.1 ID=mRNA_H-elongata_contig15509.3610.1|Name=mRNA_H-elongata_contig15509.3610.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1626bp|location=Sequence derived from alignment at H-elongata_contig15509:2412..6428- (Himanthalia elongata Himel1 dioecious)back to top |