mRNA_H-elongata_contig15509.3610.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig15509.3610.1
Unique NamemRNA_H-elongata_contig15509.3610.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig15509.3610.1 vs. uniprot
Match: D8LDM2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LDM2_ECTSI)

HSP 1 Score: 402 bits (1034), Expect = 2.630e-132
Identity = 231/318 (72.64%), Postives = 258/318 (81.13%), Query Frame = 1
Query:    1 RSYSSPSRXXXXXXXXXXXXXXXXGG-STTVVPVXXXXXXXXMG----SPFGFSPFXXXXXXXXXXXPGVSFYGGGFGVNPVDLLVLGGVAYGVTQLVKGGGPSFGNLDGLQPSSLGEGVDVLKLQVALNCRDRSRNSILGVLDEISSRGDTETRSGLAEVVSEVGLALARRSTDWMASASALEHFNNRNAERAEATFSQYTVQVRTKIERETKVMIGGRNVSSGRYGEAP--QGGPTVAVVTLVLALRGDSLKKLGLDRGVSSISGVRMALEAIASGSLTDGGDNVLAAEVLWTPEEPSEVLTREDVVVDFPELIDL 933
            RS+SSPSR                GG STTVVP XXXXXXXX      SPFGFSPF           PGVSFYGGGFGVNPVDLLVLGGVAYGV+QLVKGGG SFGNLD   PSSLGEGVDVLKLQVA+NCRDRS NSILGVL+++SSRGDTE+RSGLAEVVSEV LALARRS DW+ASAS LEHFNNRN ERAEATFSQY++Q+RTKIERET  +IGG+N+S+ R G      GGPTVAVV+LV+ALRGD++K+LGLDR VS+ISG++ AL+ IASGSL+DGGDNVLAAEVLWTPEEP EVLTRED + DFPEL+DL
Sbjct:  102 RSFSSPSRSYSAPSAPSRSYAPSYGGGSTTVVPXXXXXXXXXXXXXXXSPFGFSPFGR---------PGVSFYGGGFGVNPVDLLVLGGVAYGVSQLVKGGGTSFGNLDDSPPSSLGEGVDVLKLQVAINCRDRSSNSILGVLEDVSSRGDTESRSGLAEVVSEVSLALARRSLDWVASASELEHFNNRNVERAEATFSQYSIQLRTKIERETNAVIGGKNISAERSGGGGIGSGGPTVAVVSLVVALRGDAMKRLGLDRSVSNISGLKTALQTIASGSLSDGGDNVLAAEVLWTPEEPWEVLTREDAIADFPELMDL 410          
BLAST of mRNA_H-elongata_contig15509.3610.1 vs. uniprot
Match: A0A835ZEJ7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZEJ7_9STRA)

HSP 1 Score: 206 bits (525), Expect = 5.920e-57
Identity = 124/243 (51.03%), Postives = 160/243 (65.84%), Query Frame = 1
Query:  229 VDLLVLGGVAYGVTQL----VKGGGPSFGNLDGLQPSSLGEGVDVLKLQVALNCRDRSRNSILGVLDEISSRGDTETRSGLAEVVSEVGLALARRSTDWMASASALEHFNNRNAERAEATFSQYTVQVRTKIERETKVMIGGRNVSSGRY--GEAPQ--GGPTVAVVTLVLALRGDSLKKLGLDRGVSSISGVRMALEAIASGSLTDGGDNVLAAEVLWTPEEPSEVLTREDVVVDFPELIDL 933
            V+LL++GGV    +QL    V  GG S  +++G    SLG GV V+KLQVALN  DRS   IL  L  I+ R +T +R GL+  VSEV LAL RR  DW+ASAS  E+F  R+AERAEA F+ Y +  RTK+ERET    GG ++S  R   G  P+  G PT AVVT+VLAL+G+SLK+  L+R ++S S +R  L  +A  + TD G+NVL  E+LWTPEEP E L R+ V+ DFPEL+DL
Sbjct:  160 VNLLLVGGVVLTASQLLRTQVSSGGWSSVDVEG---GSLGRGVGVVKLQVALNASDRSSRGILAQLKSIAERAETSSRGGLSTAVSEVCLALVRRQPDWIASASQYEYFAPRSAERAEAVFNTYAIAERTKVERETVSRFGGEDLSDSRRSDGVRPEDLGKPTQAVVTIVLALKGESLKRFQLERSINSASALRNVLTQVAGDATTDDGENVLGVELLWTPEEPWESLDRQAVLEDFPELMDL 399          
BLAST of mRNA_H-elongata_contig15509.3610.1 vs. uniprot
Match: A0A7S2XX02_9STRA (Hypothetical protein (Fragment) n=2 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XX02_9STRA)

HSP 1 Score: 188 bits (477), Expect = 2.840e-50
Identity = 116/243 (47.74%), Postives = 160/243 (65.84%), Query Frame = 1
Query:  211 GFGV---NPVDLLVLGGVAYGVTQLVKG--GGPSFGNLDGLQ-PSSLGEGVDVLKLQVALNCRDRSRNSILGVLDEISSRGDTETRSGLAEVVSEVGLALARRSTDWMASASALEHFNNRNAERAEATFSQYTVQVRTKIERETKVMIGGRNVSSGRYGE----APQGGPTVAVVTLVLALRGDSLKKLGLDRGVSSISGVRMALEAIASGSLTDGGDNVLAAEVLWTPEEPSEVLTREDVVV 909
            GFGV   NP++ +VLG VAYGV  ++ G      +G LD  + PSSLG+GV VLK Q+ALN +DR+  S+L  L  +S    T +R GL+ VVSEV L L RRS +W A AS L++F  R+A +AE+ F + +   R+K+++E+  + G   +S G +      A  G  T+AVVT+ LALRGDSLK      GV++IS  + AL AI++   TDGG+NVLAAEVLWTPE PSEVL+++DV++
Sbjct:  144 GFGVSYFNPINAIVLGAVAYGVISIIGGLTSSGQWGTLDDEEGPSSLGQGVSVLKFQLALNVKDRTAMSLLNDLRVVSESSSTSSRFGLSNVVSEVALTLLRRSAEWEAVASELQYFGPRDASKAESAFGRISTGERSKVQQESGQVDG---MSVGGFANQKVGAGDGDATLAVVTIALALRGDSLKSFD---GVNNISQAQAALRAISADVATDGGENVLAAEVLWTPENPSEVLSKQDVIM 380          
BLAST of mRNA_H-elongata_contig15509.3610.1 vs. uniprot
Match: H6WBA9_VAULI (Uncharacterized protein n=1 Tax=Vaucheria litorea TaxID=109269 RepID=H6WBA9_VAULI)

HSP 1 Score: 183 bits (464), Expect = 5.780e-49
Identity = 105/244 (43.03%), Postives = 156/244 (63.93%), Query Frame = 1
Query:  214 FGVNPVDLLVLGGVAYGVTQLVKGGGP----SFGNLDGLQPSSLGEGVDVLKLQVALNCRDRSRNSILGVLDEISSRGDTETRSGLAEVVSEVGLALARRSTDWMASASALEHFNNRNAERAEATFSQYTVQVRTKIERETKVMIGGRNVSSGRYGEAPQGGPTVAVVTLVLALRGDSLKKLGLDRGVSSISGVRMALEAIASGSLTDGGDNVLAAEVLWTPEEPSEVLTREDVVVDFPELIDL 933
            F  + VD+ ++G V + ++Q++  G       +GN D    SSLG GV VLKLQ+ L+C+DR+ N +LG +  I+    T   +GL+ + SE  LAL R S +W++++S  E+F+ RN+ +AE+ F+ Y+V  R+K E+ET       N S    G      PT AVV+LVLA+ G++L+   LD+ V+S+S ++ AL  I+S SLTD G NVLAAE++WTPE+  EVL RE ++ DFPEL+DL
Sbjct:  101 FAPSLVDVAIVGVVIFAISQVLNSGSSLTQNRWGNFDDDYFSSLGNGVSVLKLQICLDCKDRTENGVLGQIRNIAQ---TSQNTGLSYMTSEACLALLRNSDNWISASSKFEYFDPRNSNKAESAFNAYSVAERSKFEKETT-----ENFSQNEIGV-----PTKAVVSLVLAINGETLRPFDLDKSVNSVSALKNALSKISSDSLTDDGMNVLAAELIWTPEDAREVLDRESIIQDFPELMDL 331          
BLAST of mRNA_H-elongata_contig15509.3610.1 vs. uniprot
Match: A0A7S2UEM4_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UEM4_9STRA)

HSP 1 Score: 136 bits (342), Expect = 2.110e-32
Identity = 82/215 (38.14%), Postives = 129/215 (60.00%), Query Frame = 1
Query:  292 PSFGNLDGLQPSSLGEGVDVLKLQVALNCRDRSRNSILGVLD-EISSRGDTETRSGLAEVVSEVGLALARRSTDWMASASALEHFNNRNAERAEATFSQYTVQVRTKIERETKVMIGGRNVSSGRYGEAPQGGPTVAVVTLVLALRGDSLKKLGLDRGVSSISGVRMALEAIASGSLTDGGDNVLAAEVLWTPEEPSEVLTREDVVVDFPELIDL 933
            P FG +   +   LG+G+ + K+QVALN RDR   SI  +L+ + +S GD+ ++  LA + +EV LAL R+S +W+ + S  + F+ ++A +AE  ++ ++ +   K E+E             +  +   GGPT+ VV+LVL ++GD+ K    D    SISG R  + ++AS S+ DGG  + AAEV WTP E  EVLT  DV++DFPE++D+
Sbjct:   77 PMFGKMFE-ESGPLGKGITIGKVQVALNARDRGAGSIFDLLESKAASSGDSPSQVQLARLTNEVCLALLRKSDEWVGACSESKWFSQKDAGKAEGLYNDWSNKEAAKFEKE---------YVPDKDSDVKPGGPTIVVVSLVLEIQGDTTK---FDGAGFSISGTREVVSSVASDSMVDGGYCLNAAEVFWTPGERDEVLTSRDVILDFPEIVDM 278          
BLAST of mRNA_H-elongata_contig15509.3610.1 vs. uniprot
Match: A0A6U4YZC0_HEMAN (Hypothetical protein n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A6U4YZC0_HEMAN)

HSP 1 Score: 134 bits (336), Expect = 1.490e-30
Identity = 88/243 (36.21%), Postives = 136/243 (55.97%), Query Frame = 1
Query:  214 FGVNPVDLLVLGGVAYGVTQLVKGGGPSFGNLDGLQPSSLGEGVDVLKLQVALNCRDRSRNSILGVLDEISSRGDTETRSGLAEVVSEVGLALARRSTDWMASASALEHFNNRNAERAEATFSQYTVQVRTKIERETKVMIGGRNVSSGRYGEAPQ---GGPTVAVVTLVLALRGDSLKKLGLDRGVSSISGVRMALEAIASGSLTDGGDNVLAAEVLWTPEEPSEVLTREDVVVDFPELIDL 933
            FG +   L+++G + +  T L  G G               E + V K+QVA NC DR  NS+LGV+  ++   DT+    LA +VS+V LAL R+  DW++  + +E  +       EATFSQ +++ R KIERET   + G + S  R GE      G  T AV+TL+L L+G  + +       + ++ +R +L ++  GS   G D++LAAEV+WTPEEP E +T ++V++D+P+ I L
Sbjct:  169 FGPSFGSLVLVGSMLFMATSLFGGWG-----------QDEEEALSVCKVQVATNCPDRGPNSVLGVIARLADEVDTDDEDSLASMVSDVALALLRKEGDWIS--AKIESVDXXXXXXXEATFSQMSLKERAKIERETINRVRGNDKSDAREGEGKLEDIGKATSAVITLILCLQGRKIPE------ANDMASLRKSLSSV--GSDVVGNDSLLAAEVMWTPEEPWETMTPDEVILDYPDHIPL 390          
BLAST of mRNA_H-elongata_contig15509.3610.1 vs. uniprot
Match: L1J5N6_GUITC (Uncharacterized protein n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1J5N6_GUITC)

HSP 1 Score: 123 bits (308), Expect = 1.690e-27
Identity = 85/250 (34.00%), Postives = 142/250 (56.80%), Query Frame = 1
Query:  214 FGVNP-------VDLLVLGGVAYGVTQLVKGGGPSFGNLDGLQPSSLGEGVDVLKLQVALNCRDRSRNSILGVLDEISSRGDTETRSGLAEVVSEVGLALARRSTDWMASASALEHFNNRNAERAEATFSQYTVQVRTKIERETKVMIGGRNVSSGRYGEAPQ---GGPTVAVVTLVLALRGDSLKKLGLDRGVSSISGVRMALEAIASGSLTDGGDNVLAAEVLWTPEEPSEVLTREDVVVDFPELIDL 933
            FGV P        D++V+GGVAY        G  ++   +  +      G+++ K+QVA+ C +R  NS+LG +  ++   D+ ++  +A +VS+V LAL RR  DW++  +A+E    ++    E  FSQ +   R K+ERET  ++ G++ S  R  E      G  T+AV+T+V+A+ G   KKL   R   S+   + AL ++ + +L +  D+++AAE+LW PEEP E LT +DV++++P L+ L
Sbjct:   74 FGVRPFFYGPLLTDVVVIGGVAYA-------GAMAYNMFENARQGRT-SGINIAKVQVAVCCDNRGPNSLLGTVARLARDCDSRSQRSMASLVSDVSLALLRREVDWVS--AAVETKTVKDITEGENIFSQMSFTERAKVERETFNLVAGKDKSEARSSETKLEDIGKSTMAVITMVVAMEG---KKLPEIRDSKSL---KEALMSLGTEALNE--DSLVAAELLWVPEEPWESLTADDVILEYPNLLSL 305          
BLAST of mRNA_H-elongata_contig15509.3610.1 vs. uniprot
Match: B7FQ47_PHATC (Predicted protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7FQ47_PHATC)

HSP 1 Score: 121 bits (303), Expect = 7.010e-27
Identity = 79/232 (34.05%), Postives = 128/232 (55.17%), Query Frame = 1
Query:  244 LGGVAYGVTQLVKGGGPSFGNLDGL--QPSSLGEGVDVLKLQVALNCRDRSRNSILGVLDEISSRGDTETRSGLAEVVSEVGLALARRSTDWMASASALEHFNNRNAERAEATFSQYTVQVRTKIERETKVMIGGRNVSSGRYGEAPQGGPTVAVVTLVLALRGDSLKKLGLDRGVSSISGVRMALEAIASGSLTDGGDNVLAAEVLWTPEEPSEVLTREDVVVDFPELIDL 933
            LGG++   TQ++    PSF   D +      LG+G+ V K+QVAL   DRS +SILG+L+   +R D ++  GLA    +V +AL R+  DW+ + S  + F   ++ +AE+TF+ +  +   K E+E                +   GG T  VV++++ ++GD+ +    D    +    +  L  IAS  + + GDNV A E+ WTP +P EVL++ D+++DFPELID+
Sbjct:   86 LGGISR-KTQII----PSFHMFDKVFEDEGPLGKGITVGKIQVALTAGDRSPSSILGLLER-KARADDDSSYGLARSAYDVCMALLRKEDDWVGACSQSQWFKGGDSGKAESTFNTWADKEGAKFEKE---------YIPESSNDDKVGGSTTVVVSMIIEIQGDATE---FDGAGYTREATKKVLSNIASDCMVEEGDNVNAVEIFWTPSDPEEVLSKNDMIIDFPELIDM 299          
BLAST of mRNA_H-elongata_contig15509.3610.1 vs. uniprot
Match: A0A1E7F7B5_9STRA (Uncharacterized protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7F7B5_9STRA)

HSP 1 Score: 117 bits (292), Expect = 2.070e-26
Identity = 76/201 (37.81%), Postives = 117/201 (58.21%), Query Frame = 1
Query:  331 LGEGVDVLKLQVALNCRDRSRNSILGVLDEISSRGDTETRSGLAEVVSEVGLALARRSTDWMASASALEHFNNRNAERAEATFSQYTVQVRTKIERETKVMIGGRNVSSGRYGEAPQGGPTVAVVTLVLALRGDSLKKLGLDRGVSSISGVRMALEAIASGSLTDGGDNVLAAEVLWTPEEPSEVLTREDVVVDFPELIDL 933
            LG+G+ V K+QVAL   DRS  SI G+L++ ++  D++    LA + ++V L+L R+S DW+++ S  + F+ ++A +AE  +++ +     K E+E         V          GGPT+ VV+LVL ++GDS K    D    SI   +  L +IAS +L D G  V A E LWTP +  EVL++ D+ +DFPELID+
Sbjct:   15 LGKGITVGKVQVALQSPDRSDTSIFGLLEDHANL-DSDENEDLARLANDVCLSLMRKSDDWVSACSTGKWFSEKDAGKAERYYNELSNAEAAKFEKEYIPDEDDEEV----------GGPTLVVVSLVLEIQGDSTK---FDGAGYSIGQTKEVLSSIASDALIDDGYCVNAFEALWTPSDRKEVLSKNDITIDFPELIDV 201          
BLAST of mRNA_H-elongata_contig15509.3610.1 vs. uniprot
Match: A0A7S4P475_GUITH (Hypothetical protein n=1 Tax=Guillardia theta TaxID=55529 RepID=A0A7S4P475_GUITH)

HSP 1 Score: 121 bits (304), Expect = 3.060e-26
Identity = 81/237 (34.18%), Postives = 138/237 (58.23%), Query Frame = 1
Query:  232 DLLVLGGVAYGVTQLVKGGGPSFGNLDGLQPSSLGEGVDVLKLQVALNCRDRSRNSILGVLDEISSRGDTETRSGLAEVVSEVGLALARRSTDWMASASALEHFNNRNAERAEATFSQYTVQVRTKIERETKVMIGGRNVSSGRYGEAPQ---GGPTVAVVTLVLALRGDSLKKLGLDRGVSSISGVRMALEAIASGSLTDGGDNVLAAEVLWTPEEPSEVLTREDVVVDFPELIDL 933
            D++V+GGVAY        G  ++   +  +      G+++ K+QVA+ C +R  NS+LG +  ++   D+ ++  +A +VS+V LAL RR  DW++  +A+E    ++    E  FSQ +   R K+ERET  ++ G++ S  R  E      G  T+AV+T+V+A+ G   KKL   R   S+   + AL ++ + +L +  D+++AAE+LW PEEP E LT +DV++++P L+ L
Sbjct:  178 DVVVIGGVAYA-------GAMAYNMFENARQGRT-SGINIAKVQVAVCCDNRGPNSLLGTVARLARDCDSRSQRSMASLVSDVSLALLRREVDWVS--AAVETKTVKDITEGENIFSQMSFTERAKVERETFNLVAGKDKSEARSSETKLEDIGKSTMAVITMVVAMEG---KKLPEIRDSKSL---KEALMSLGTEALNE--DSLVAAELLWVPEEPWESLTADDVILEYPNLLSL 396          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig15509.3610.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LDM2_ECTSI2.630e-13272.64Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835ZEJ7_9STRA5.920e-5751.03Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S2XX02_9STRA2.840e-5047.74Hypothetical protein (Fragment) n=2 Tax=Fibrocapsa... [more]
H6WBA9_VAULI5.780e-4943.03Uncharacterized protein n=1 Tax=Vaucheria litorea ... [more]
A0A7S2UEM4_9STRA2.110e-3238.14Hypothetical protein n=1 Tax=Attheya septentrional... [more]
A0A6U4YZC0_HEMAN1.490e-3036.21Hypothetical protein n=1 Tax=Hemiselmis andersenii... [more]
L1J5N6_GUITC1.690e-2734.00Uncharacterized protein n=1 Tax=Guillardia theta (... [more]
B7FQ47_PHATC7.010e-2734.05Predicted protein n=2 Tax=Phaeodactylum tricornutu... [more]
A0A1E7F7B5_9STRA2.070e-2637.81Uncharacterized protein n=1 Tax=Fragilariopsis cyl... [more]
A0A7S4P475_GUITH3.060e-2634.18Hypothetical protein n=1 Tax=Guillardia theta TaxI... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig15509contigH-elongata_contig15509:2412..6428 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score398.3
Seed ortholog evalue2.9e-108
Seed eggNOG ortholog2880.D8LDM2
EggNOG free text desc.Protein of unknown function (DUF1517)
EggNOG OGs2QUI9@2759,COG4371@1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionProtein of unknown function DUF1517
Ec32 orthologEc-15_000050.1
Exons5
Model size1846
Cds size813
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929914.6291604-UTR-H-elongata_contig15509:2411..33211622929914.6291604-UTR-H-elongata_contig15509:2411..3321Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig15509 2412..3321 -
1691679206.6115608-UTR-H-elongata_contig15509:2411..33211691679206.6115608-UTR-H-elongata_contig15509:2411..3321Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig15509 2412..3321 -
1622929914.7345092-UTR-H-elongata_contig15509:6305..64281622929914.7345092-UTR-H-elongata_contig15509:6305..6428Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig15509 6306..6428 -
1691679206.6700435-UTR-H-elongata_contig15509:6305..64281691679206.6700435-UTR-H-elongata_contig15509:6305..6428Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig15509 6306..6428 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929914.6455297-CDS-H-elongata_contig15509:3321..34791622929914.6455297-CDS-H-elongata_contig15509:3321..3479Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15509 3322..3479 -
1691679206.6207874-CDS-H-elongata_contig15509:3321..34791691679206.6207874-CDS-H-elongata_contig15509:3321..3479Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15509 3322..3479 -
1622929914.6736715-CDS-H-elongata_contig15509:4202..43711622929914.6736715-CDS-H-elongata_contig15509:4202..4371Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15509 4203..4371 -
1691679206.630968-CDS-H-elongata_contig15509:4202..43711691679206.630968-CDS-H-elongata_contig15509:4202..4371Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15509 4203..4371 -
1622929914.6879826-CDS-H-elongata_contig15509:4975..51781622929914.6879826-CDS-H-elongata_contig15509:4975..5178Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15509 4976..5178 -
1691679206.6408281-CDS-H-elongata_contig15509:4975..51781691679206.6408281-CDS-H-elongata_contig15509:4975..5178Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15509 4976..5178 -
1622929914.704796-CDS-H-elongata_contig15509:5548..56721622929914.704796-CDS-H-elongata_contig15509:5548..5672Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15509 5549..5672 -
1691679206.6502273-CDS-H-elongata_contig15509:5548..56721691679206.6502273-CDS-H-elongata_contig15509:5548..5672Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15509 5549..5672 -
1622929914.7194488-CDS-H-elongata_contig15509:6146..63051622929914.7194488-CDS-H-elongata_contig15509:6146..6305Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15509 6147..6305 -
1691679206.660137-CDS-H-elongata_contig15509:6146..63051691679206.660137-CDS-H-elongata_contig15509:6146..6305Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15509 6147..6305 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig15509.3610.1prot_H-elongata_contig15509.3610.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig15509 3322..6305 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig15509.3610.1

>prot_H-elongata_contig15509.3610.1 ID=prot_H-elongata_contig15509.3610.1|Name=mRNA_H-elongata_contig15509.3610.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=271bp
MGSPFGFSPFGSPFGFSPFGTPGVSFYGGGFGVNPVDLLVLGGVAYGVTQ
LVKGGGPSFGNLDGLQPSSLGEGVDVLKLQVALNCRDRSRNSILGVLDEI
SSRGDTETRSGLAEVVSEVGLALARRSTDWMASASALEHFNNRNAERAEA
TFSQYTVQVRTKIERETKVMIGGRNVSSGRYGEAPQGGPTVAVVTLVLAL
RGDSLKKLGLDRGVSSISGVRMALEAIASGSLTDGGDNVLAAEVLWTPEE
PSEVLTREDVVVDFPELIDL*
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mRNA from alignment at H-elongata_contig15509:2412..6428-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig15509.3610.1 ID=mRNA_H-elongata_contig15509.3610.1|Name=mRNA_H-elongata_contig15509.3610.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=4017bp|location=Sequence derived from alignment at H-elongata_contig15509:2412..6428- (Himanthalia elongata Himel1 dioecious)
CGGTCATACTCCTCGCCTTCACGGTCATACTCCTCGCCGTCACGGTCATA CTCCTCGCCGTCGAGGTCCTACGGAGGCAGTACGACCGTCGTACCCGTGC CGGTTCCGAGCTACGGATACGGGATGGGATCGCCGTTCGGATTCTCCCCC TTCGGATCGCCGTTCGGGTTTTCCCCTTTTGGCACCCCCGGCGTTTCTTT CTACGGGGGAGGGTTCGGAGTCAACCCCGTGGATCTGCTCGTGCTCGGCG GCGTCGCATACGGGGTCACGCAGCTGGTGAAGGTAAGAGGAGGGATTTTT GGGATGGGGGAGCGGGGGCTTCACTAATCTCGGAACGCGCGAGGGCGTAA TGACCTACCCGATACACGCTGTCCACAATTCCTTCACCGAAACAATTAAT TATTTTAGTGTCGTTCCGAGATTAATTATTAGTAGTGAAGGCTAGGAATT GAAGATTGCTTTTATTTTTATCTGCGCTGAAGTGTTGTGGTAGAACCCGC AGGCGGTGATTTTTCTGTCTTGGAAGTCTCCTCGTAACGAAGTGCATCAG CGCTGTGTGGGCATTGACGCGAGGTGCGCGGGCAGAGAGAGAAAGCTGTT TCGAGACCTCTGCCTCTGTCTCTGTACCTGGAGCACATCACCGTTTGACC CGAATTTACACTAAATATCCGTGGATTTATATAGCACATGGAGGCTTTCG CTCTGTTTTGATGGTGATGGTGATGATGATGGTGATTGCTCCTAACCGTA CCGAAGGGTGGGGGGCCGAGCTTTGGGAACCTCGATGGATTACAGCCTTC CAGCCTCGGAGAGGGCGTCGACGTCTTGAAACTGCAGGTGGCGCTTAACT GTCGCGACAGGAGCAGGAACTCCATCCTGGGTGCGTTCCGATCCCTGACC ATCAACGCAGCGCTTGCGTTATTTTTGGCAGCCAAGCACGTATTGTAGTG CTGTATGGTTATTCTCTTTCATCCGTGTGCCTACCTTGCGGTGCGGCATA GGGGTCGGTCTGTACAATTTTGCTGAAAATTACTTAAAATATATTTATAT ATATATATATATATATATATATATTGAGAGCTGTTTTAGGCCAGCACAAC GTGCATTTGTCGGTCCGTGTAACATGTGGCGTAACGTGTAGTGTAGTGGT TAGGGTTAGGGTTAGGGTTAGGGTTAGCATGTACTTACAGCGACAGTAGA AGGCCTGCCGCAGGAGATCCAACCCTTTCTTGCGTCGAACATTTTCCCAG GTGTTCTCGACGAAATATCTAGCCGTGGGGACACGGAAACTCGGAGCGGG CTGGCAGAGGTTGTGAGCGAGGTTGGGCTCGCCCTTGCTCGTAGATCGAC GGACTGGATGGCTTCGGCCAGCGCGCTGGAGCACTTCAACAATCGCAATG CCGAACGCGCGGAGGCCACCTTCAGCCAGTACACCGTCCAAGTCAGGACT AAGGTGCGTGGCGCGGTTCGATCCAAGCAAGGAAGGAAGGGAGACGAGGG GTGAACGGTCCCATTGTAGAAGGCGTTTATGAGGTAGGGCGAGTTTTGAA TGCACGGGGATTGATTGACGTCAAATAAGAGCAGGTCTCGGGGTGTGCCT TGCGTTTGCTCGTGTGGCGCCTAGAGCATTTAAGATTGTCATGGTGACAT GAAATAGATACATCCTCTGTCTTTGTTATTCATGGTTAAGTAACCATACG CTTGCGGTTCAGTACCCAAATATAGCCTTGTAGATCCATTAAGGTTGCTT CATGGAGTTTGGTGGAATCTATCGTATCAAATATGCTTTATCATGTTAGC TGTTTGTCGAGTAAGCTCTTCGCGGCATGTGGCCGCGTGGCTACGCAAGG CTCAACTTTGATGGGTGTCACGAAAGTCGTGGAATTGGATAGATTTTTCG CTTTCATATCTCCTCCTCTTGTACCCTTGGTCATAATCCTCTCCAACATC TTGATTAGACAATCCCTCCCACACCGTTCGCCATACCCCTTCGCGCCTGA ACCGACACCAACAATACCACGCCAACCACGGACGTCGATGTCAACGTCGC GCGGTAGATCGAACGCGAGACCAAGGTGATGATCGGCGGTCGGAACGTGT CCTCTGGACGCTATGGCGAAGCTCCACAAGGAGGCCCCACGGTGGCTGTC GTCACCCTCGTACTGGCTCTCCGAGGAGATTCATTGAAAAAGCTTGGACT CGACCGAGGCGTGAGCAGCATTTCAGGTGACCGCCCGCGGAAGGTGGCAG ATGACTCTGTTCCCTGGGAGCTTGGCACGGGGTTTGGTTGATGAGGAGGC GGGAATGCCCATTAGGGGTGGTAGGACACGCATCCAGTAGTTCATTATAT ATTAAACTGCACATAACCGCGCAATCCGACCCTGTCATGCTATTGAATAG TCATTCTAGGCTACTCTATTAATAGCATTGATCCTCCTCCTCCCAATGAG GGATGATAATATTTTCTACAGAAACCTCAGATCAGACGTGGCAAACGAGT GTGTGTGTGTGTGTGTTTGTGTATTTTTGATATTGCACATAACCGCGCAT TCCGGCCCTGTAATGCTATTGAATAGTCCTTTTAGGCTAGCCGCATTGAT CCCCCTAATGGGAAATCAATTATATATGTGTGTAAGAGAGTATGTGCCAT GAACACCTGATGGTATCAAATGACATTATGGATGATGTCCATCTGAAGAA ACATTTGAGACATGTCCAGTACACATAAGTCATCATAAGTGGTGGGGAGA TGGAGGTTGCGCTCTTGTACTGGCATGACCTGGTGCGCTTTGCCTTATTT TTTATAATGGTTCCTGACGTCGTTCTTTTTCAACATGGTATGTGGGCGGA ACCCTGACAAAACCAAGGCAAGCCCCCCCAAGTTGACACGCATGCCGAGA ACAATAAGAACATTGCTACCAATGCACGGGTGACTCAAAACTTTAACAGG CGTTCGTATGGCGCTAGAGGCTATCGCGAGCGGCTCCCTTACTGATGGAG GAGACAACGTCCTCGCCGCAGAAGTGCTCTGGACGCCCGAGGAGCCGTCG GAAGTGCTCACCAGAGAAGACGTCGTCGTAGATTTCCCGGAGCTCATAGA TCTCTGAGACGTTTTCAGCATCCGGGAGGTTGTGTGTATCCTTGTATAGC GCGAAGAACGTTTTTTGGGCCAATCGAGCGCGGAAAATAGGTTCAACGAT TTGTGCCACAGGTCGGCGATGTCGGCGATGGTGCCTGTTCCCGTGAAGAG ATGTTCATCAGTCGATGTAAGTATCAAAGGAGTGAGTAGTTGATGTAAAA TAGGTATCGCATATATAATGTTCTAGATGGGGCTGCTAGGCCTTGGTGAT CTCGACGCCCAGACGAAAAACTTAAAAGTGGTGGGACGGGGGACGGGTAG ACGAATGCCCGGCATTTGATGAATGTTATCAATAATTTTGCAGGGCGGAC GGATGTAGAGGGACAACCGCTTTGTTGTGTTTGATCGTGCTACGTCATGC CAGTTCTCGAAGTCGTATGTTGCGATTTGACGTAACGTGCCTTTTGAGGG CTCAAGTGTTCTGCGAACGGTCGTATAATAATTTAAAAGAAAATATATTT TCAGTCCCCCCCCACTTCTCCACCATCGAAGACGGCAACGATGGCTAGTA TAAATATCGAGGCGAGAGATAGAATATATGATGTGTCAGCCAAGTTCGAC CACTCTTATATTTCCCGCTCTCGGTTATGATAGATAACGGGAGACCTCCC TGTATATGTACTCACGTTCAAGGCACCTTGTAGGGAGTCACAAGAGAAAC GCACGATGAAGGCACACGAAAAGCAAGGCGAGATAACCACTCGGGCAACC CTCACCATTGGTTGACCCGCGCTTGTTTCTGAAGACACCCTCCAGTATAA TTATTTAAAAACATATGAATCAATTCCAACTCTCCGAACATCCACACCTT CTTAGCACCATGGGAGGTGTTGCCCAGGGGCCAACTATCGTCAGGTTCGA ATATGGACATTTTATCT
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Coding sequence (CDS) from alignment at H-elongata_contig15509:2412..6428-

>mRNA_H-elongata_contig15509.3610.1 ID=mRNA_H-elongata_contig15509.3610.1|Name=mRNA_H-elongata_contig15509.3610.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1626bp|location=Sequence derived from alignment at H-elongata_contig15509:2412..6428- (Himanthalia elongata Himel1 dioecious)
ATGGGATCGCCGTTCGGATTCTCCCCCTTCGGATCGCCGTTCGGGTTTTC
CCCTTTTGGCACCCCCGGCGTTTCTTTCTACGGGGGAGGGTTCGGAGTCA
ACCCCGTGGATCTGCTCGTGCTCGGCGGCGTCGCATACGGGGTCACGCAG
CTGGTGAAGATGGGATCGCCGTTCGGATTCTCCCCCTTCGGATCGCCGTT
CGGGTTTTCCCCTTTTGGCACCCCCGGCGTTTCTTTCTACGGGGGAGGGT
TCGGAGTCAACCCCGTGGATCTGCTCGTGCTCGGCGGCGTCGCATACGGG
GTCACGCAGCTGGTGAAGGGTGGGGGGCCGAGCTTTGGGAACCTCGATGG
ATTACAGCCTTCCAGCCTCGGAGAGGGCGTCGACGTCTTGAAACTGCAGG
TGGCGCTTAACTGTCGCGACAGGAGCAGGAACTCCATCCTGGGGTGGGGG
GCCGAGCTTTGGGAACCTCGATGGATTACAGCCTTCCAGCCTCGGAGAGG
GCGTCGACGTCTTGAAACTGCAGGTGGCGCTTAACTGTCGCGACAGGAGC
AGGAACTCCATCCTGGGTGTTCTCGACGAAATATCTAGCCGTGGGGACAC
GGAAACTCGGAGCGGGCTGGCAGAGGTTGTGAGCGAGGTTGGGCTCGCCC
TTGCTCGTAGATCGACGGACTGGATGGCTTCGGCCAGCGCGCTGGAGCAC
TTCAACAATCGCAATGCCGAACGCGCGGAGGCCACCTTCAGCCAGTACAC
CGTCCAAGTCAGGACTAAGGTGTTCTCGACGAAATATCTAGCCGTGGGGA
CACGGAAACTCGGAGCGGGCTGGCAGAGGTTGTGAGCGAGGTTGGGCTCG
CCCTTGCTCGTAGATCGACGGACTGGATGGCTTCGGCCAGCGCGCTGGAG
CACTTCAACAATCGCAATGCCGAACGCGCGGAGGCCACCTTCAGCCAGTA
CACCGTCCAAGTCAGGACTAAGATCGAACGCGAGACCAAGGTGATGATCG
GCGGTCGGAACGTGTCCTCTGGACGCTATGGCGAAGCTCCACAAGGAGGC
CCCACGGTGGCTGTCGTCACCCTCGTACTGGCTCTCCGAGGAGATTCATT
GAAAAAGCTTGGACTCGACCGAGGCGTGAGCAGCATTTCAGATCGAACGC
GAGACCAAGGTGATGATCGGCGGTCGGAACGTGTCCTCTGGACGCTATGG
CGAAGCTCCACAAGGAGGCCCCACGGTGGCTGTCGTCACCCTCGTACTGG
CTCTCCGAGGAGATTCATTGAAAAAGCTTGGACTCGACCGAGGCGTGAGC
AGCATTTCAGGCGTTCGTATGGCGCTAGAGGCTATCGCGAGCGGCTCCCT
TACTGATGGAGGAGACAACGTCCTCGCCGCAGAAGTGCTCTGGACGCCCG
AGGAGCCGTCGGAAGTGCTCACCAGAGAAGACGTCGTCGTAGATTTCCCG
GAGCTCATAGATCTCTGAGCGTTCGTATGGCGCTAGAGGCTATCGCGAGC
GGCTCCCTTACTGATGGAGGAGACAACGTCCTCGCCGCAGAAGTGCTCTG
GACGCCCGAGGAGCCGTCGGAAGTGCTCACCAGAGAAGACGTCGTCGTAG
ATTTCCCGGAGCTCATAGATCTCTGA
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