mRNA_H-elongata_contig154800.3599.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig154800.3599.1
Unique NamemRNA_H-elongata_contig154800.3599.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig154800.3599.1 vs. uniprot
Match: A0A0P1ACE6_PLAHL (Uncharacterized protein n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1ACE6_PLAHL)

HSP 1 Score: 53.5 bits (127), Expect = 3.590e-6
Identity = 26/83 (31.33%), Postives = 43/83 (51.81%), Query Frame = 1
Query:    1 WESDSGVTFHILHTRAGMSAYKKASPGMTIEIADGNTLPVNGFGRIEMDVDQPSHTTKRVKMDDVAYVPGISRNLLSTLKAVE 249
            W  DSG T H+ H     S    ++  +T+ +   N +P+ G G+IE++V     T + + + DV Y P +  +LLS   AV+
Sbjct:  229 WTIDSGCTRHVTHESQWFSTISASNGSITVGVK--NQIPIEGIGKIELEVTDSKGTQRMLTLHDVLYAPELKFSLLSVPAAVK 309          
BLAST of mRNA_H-elongata_contig154800.3599.1 vs. uniprot
Match: A0A4C1TCT1_EUMVA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Eumeta variegata TaxID=151549 RepID=A0A4C1TCT1_EUMVA)

HSP 1 Score: 52.0 bits (123), Expect = 1.300e-5
Identity = 29/81 (35.80%), Postives = 41/81 (50.62%), Query Frame = 1
Query:    1 WESDSGVTFHILHTRAGMSAYKKASPGMTIEIADGNTLPVNGFGRIEMDVDQPSHTTKRVKMDDVAYVPGISRNLLSTLKA 243
            W  D+G T H+  TR     Y+  +   +I+ A    L   G G IE       +   +++++DV YVPGISRNL S L A
Sbjct:  296 WWVDNGATKHVTRTRKYFVEYESFNDQKSIQAAGKEILNAEGKGTIEFLSRINQNLEIQIRLEDVWYVPGISRNLFSVLAA 376          
BLAST of mRNA_H-elongata_contig154800.3599.1 vs. uniprot
Match: A0A4C1SBF3_EUMVA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Eumeta variegata TaxID=151549 RepID=A0A4C1SBF3_EUMVA)

HSP 1 Score: 52.0 bits (123), Expect = 1.380e-5
Identity = 29/81 (35.80%), Postives = 41/81 (50.62%), Query Frame = 1
Query:    1 WESDSGVTFHILHTRAGMSAYKKASPGMTIEIADGNTLPVNGFGRIEMDVDQPSHTTKRVKMDDVAYVPGISRNLLSTLKA 243
            W  D+G T H+  TR     Y+  +   +I+ A    L   G G IE       +   +++++DV YVPGISRNL S L A
Sbjct:  269 WWVDNGATKHVTRTRKYFVEYESFNDQKSIQAAGKEILNAEGKGTIEFLSRINQNLEIQIRLEDVWYVPGISRNLFSVLAA 349          
BLAST of mRNA_H-elongata_contig154800.3599.1 vs. uniprot
Match: A0A2P4XU07_9STRA (Uncharacterized protein n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4XU07_9STRA)

HSP 1 Score: 50.4 bits (119), Expect = 4.090e-5
Identity = 26/83 (31.33%), Postives = 41/83 (49.40%), Query Frame = 1
Query:    1 WESDSGVTFHILHTRAGMSAYKKASPGMTIEIADGNTLPVNGFGRIEMDVDQPSHTTKRVKMDDVAYVPGISRNLLSTLKAVE 249
            W  D G T H+ H     S    A+ G +I +   N +P+ G GR+E++V     T + + +  V Y P +  +LLS   AV+
Sbjct:  153 WTIDPGCTRHVTHESQWFSDI--AASGGSITVGGNNQIPIEGIGRVELEVSDSKGTMQNLILHGVLYAPQLQFSLLSVPAAVK 233          
BLAST of mRNA_H-elongata_contig154800.3599.1 vs. uniprot
Match: A0A225UU99_9STRA (Pol Polyprotein (Fragment) n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225UU99_9STRA)

HSP 1 Score: 50.1 bits (118), Expect = 6.210e-5
Identity = 25/83 (30.12%), Postives = 42/83 (50.60%), Query Frame = 1
Query:    1 WESDSGVTFHILHTRAGMSAYKKASPGMTIEIADGNTLPVNGFGRIEMDVDQPSHTTKRVKMDDVAYVPGISRNLLSTLKAVE 249
            W  DSG T H+ H     +     + G +I +   N +P+ G GR+E++V     T +++ +  V Y P +  +LLS   AV+
Sbjct:  205 WTIDSGCTRHVSHESQWFTDI--TTSGGSITVGGNNQIPIEGIGRVELEVSDSKGTMQKLILHGVLYAPQLQFSLLSVPAAVK 285          
BLAST of mRNA_H-elongata_contig154800.3599.1 vs. uniprot
Match: A0A6A3YSJ5_9STRA (Uncharacterized protein n=2 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6A3YSJ5_9STRA)

HSP 1 Score: 49.3 bits (116), Expect = 7.070e-5
Identity = 24/76 (31.58%), Postives = 39/76 (51.32%), Query Frame = 1
Query:    1 WESDSGVTFHILHTRAGMSAYKKASPGMTIEIADGNTLPVNGFGRIEMDVDQPSHTTKRVKMDDVAYVPGISRNLL 228
            W  DSG T H+ H     S    ++ G +I +   N +P+ G GR+E++V       K++ + DV Y P +  +LL
Sbjct:  129 WTIDSGCTRHVTHEAQWFSNI--SASGGSITVGGKNQIPIEGIGRVELEVIDSKRNMKKLILHDVLYAPQLHFSLL 202          
BLAST of mRNA_H-elongata_contig154800.3599.1 vs. uniprot
Match: A0A6A4DDX6_9STRA (Uncharacterized protein n=2 Tax=Phytophthora rubi TaxID=129364 RepID=A0A6A4DDX6_9STRA)

HSP 1 Score: 49.7 bits (117), Expect = 7.480e-5
Identity = 29/95 (30.53%), Postives = 48/95 (50.53%), Query Frame = 1
Query:    1 WESDSGVTFHILHTRAGMSAYKKASPGMTIEIADGNTLPVNGFGRIEMDVDQPSHTTKRVKMDDVAYVPGISRNLLSTLKAVEQWEKPLIYDREK 285
            W  DSG T H+ H     S    ++ G +I +   N +P+ G GR+E++V       K++ +  V Y P +  +LLS   AV+  +    +DR+K
Sbjct:  138 WTIDSGCTRHVTHEAQWFSNI--SASGGSITVGGKNQIPIEGIGRVELEVIDYKGNMKKLILHGVLYAPQLHFSLLSLSAAVKH-DFRFSFDRKK 229          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig154800.3599.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A0P1ACE6_PLAHL3.590e-631.33Uncharacterized protein n=1 Tax=Plasmopara halsted... [more]
A0A4C1TCT1_EUMVA1.300e-535.80Retrovirus-related Pol polyprotein from transposon... [more]
A0A4C1SBF3_EUMVA1.380e-535.80Retrovirus-related Pol polyprotein from transposon... [more]
A0A2P4XU07_9STRA4.090e-531.33Uncharacterized protein n=1 Tax=Phytophthora palmi... [more]
A0A225UU99_9STRA6.210e-530.12Pol Polyprotein (Fragment) n=1 Tax=Phytophthora me... [more]
A0A6A3YSJ5_9STRA7.070e-531.58Uncharacterized protein n=2 Tax=Phytophthora fraga... [more]
A0A6A4DDX6_9STRA7.480e-530.53Uncharacterized protein n=2 Tax=Phytophthora rubi ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig154800contigH-elongata_contig154800:1219..1506 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size288
Cds size288
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929913.6173737-CDS-H-elongata_contig154800:1218..15061622929913.6173737-CDS-H-elongata_contig154800:1218..1506Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig154800 1219..1506 -
1691679206.1881535-CDS-H-elongata_contig154800:1218..15061691679206.1881535-CDS-H-elongata_contig154800:1218..1506Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig154800 1219..1506 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig154800.3599.1prot_H-elongata_contig154800.3599.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig154800 1219..1506 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig154800.3599.1

>prot_H-elongata_contig154800.3599.1 ID=prot_H-elongata_contig154800.3599.1|Name=mRNA_H-elongata_contig154800.3599.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=96bp
WESDSGVTFHILHTRAGMSAYKKASPGMTIEIADGNTLPVNGFGRIEMDV
DQPSHTTKRVKMDDVAYVPGISRNLLSTLKAVEQWEKPLIYDREKI
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mRNA from alignment at H-elongata_contig154800:1219..1506-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig154800.3599.1 ID=mRNA_H-elongata_contig154800.3599.1|Name=mRNA_H-elongata_contig154800.3599.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=288bp|location=Sequence derived from alignment at H-elongata_contig154800:1219..1506- (Himanthalia elongata Himel1 dioecious)
TGGGAATCGGATTCAGGCGTTACATTCCACATATTGCACACCCGGGCCGG AATGTCTGCGTACAAGAAGGCGTCGCCGGGGATGACCATTGAGATCGCTG ACGGAAACACTCTACCGGTGAATGGGTTCGGAAGAATTGAGATGGATGTG GACCAACCGAGTCACACAACCAAGAGGGTGAAGATGGACGATGTTGCGTA TGTGCCAGGAATTTCGCGGAACCTACTATCTACCCTCAAAGCAGTGGAGC AATGGGAGAAACCTCTAATATACGACAGGGAAAAAATC
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Coding sequence (CDS) from alignment at H-elongata_contig154800:1219..1506-

>mRNA_H-elongata_contig154800.3599.1 ID=mRNA_H-elongata_contig154800.3599.1|Name=mRNA_H-elongata_contig154800.3599.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=576bp|location=Sequence derived from alignment at H-elongata_contig154800:1219..1506- (Himanthalia elongata Himel1 dioecious)
TGGGAATCGGATTCAGGCGTTACATTCCACATATTGCACACCCGGGCCGG
AATGTCTGCGTACAAGAAGGCGTCGCCGGGGATGACCATTGAGATCGCTG
ACGGAAACACTCTACCGGTGAATGGGTTCGGAAGAATTGAGATGGATGTG
GACCAACCGAGTCACACAACCAAGAGGGTGAAGATGGACGATGTTGCGTA
TGTGCCAGGAATTTCGCGGAACCTACTATCTACCCTCAAAGCAGTGGAGC
AATGGGAGAAACCTCTAATATACGACAGGGAAAAAATCTGGGAATCGGAT
TCAGGCGTTACATTCCACATATTGCACACCCGGGCCGGAATGTCTGCGTA
CAAGAAGGCGTCGCCGGGGATGACCATTGAGATCGCTGACGGAAACACTC
TACCGGTGAATGGGTTCGGAAGAATTGAGATGGATGTGGACCAACCGAGT
CACACAACCAAGAGGGTGAAGATGGACGATGTTGCGTATGTGCCAGGAAT
TTCGCGGAACCTACTATCTACCCTCAAAGCAGTGGAGCAATGGGAGAAAC
CTCTAATATACGACAGGGAAAAAATC
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