mRNA_H-elongata_contig15471.3594.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig15471.3594.1 vs. uniprot
Match: A0A6H5KSG8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSG8_9PHAE) HSP 1 Score: 254 bits (648), Expect = 2.920e-71 Identity = 156/458 (34.06%), Postives = 252/458 (55.02%), Query Frame = 1
Query: 4 VGTKMLYKKKVEQDGKVEKYKYRLVAQGFWQVENVHYTETYSPTPDE---------------ELHHFNVKQVFLKVDIDDEIYIAISEEYLRLSGAVEQLNKAIYGLVLAGGCWNNKFCDDMTAIGFEQAKADICVFRKVVDGEAEMVVVGHVDDILAHAKDHATIDRFAAELGQKFKLKDMGDARYYMGCHITRNRKAR*LKIDQHLFVESMLETFNIKKSSKIPATSGVPTLSKADGPWNPEEKEGMRKFPYREAVGVLMGTATMMQPDIASAVRAVA-------------VMKIMEYFFHMKDWGIIYGGQGCGLCIEAYTD*NFGFCLDTR*SVSGMMLMLVKGAIS*YSRMQQMTASGTSEAEYIALSEAVK*VIFFRHIQEFMELSMRVGAVNVFDENKGTIKLTTNKHANCKTKHINVKHHIVKDVSDAQNVRVAYVRSEDQHADLFTKPL 1293
V +K + K ++GK++ +K RLVA+GF Q+ NV Y + SP P L+H++VKQ + +D+E+++ + S + + +AIYGL +G W D + GFEQ KAD CVFRK+VD M++V +VDDIL D + A L +KF K++G+ +++ GC I R+ +A L+I Q +++SM+E F++K +S+IPAT G GP +E+ G ++P REA+G +M +T +PD++ AVRAVA + KI+ Y +D GI Y +G GL + Y D ++ D R SVSG+ + +S S+ Q + + ++EAEYIA E VK +F R + F+ ++ V ++N+G I L N ++ +TKHI+V++H ++ + + ++ V +V + +QHADL TK L
Sbjct: 782 VSSKWCFSWKTNKEGKIDTFKARLVARGFSQIPNVDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDE-DCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADL-----GPKREDEEGG--EWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQ-RGSGLGLAVYVDASYADTEDRR-SVSGLATTVGGTVVSHGSKTQSIVSLSSTEAEYIAAGEGVKEALFVRAVLSFVAPETSGSSIKVLEDNQGAIALVQNPLSSGRTKHIDVRYHFIRGLFRSGDISVKFVPTTEQHADLLTKAL 1229
BLAST of mRNA_H-elongata_contig15471.3594.1 vs. uniprot
Match: A0A6H5JZQ8_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZQ8_9PHAE) HSP 1 Score: 254 bits (648), Expect = 4.740e-71 Identity = 156/458 (34.06%), Postives = 252/458 (55.02%), Query Frame = 1
Query: 4 VGTKMLYKKKVEQDGKVEKYKYRLVAQGFWQVENVHYTETYSPTPDE---------------ELHHFNVKQVFLKVDIDDEIYIAISEEYLRLSGAVEQLNKAIYGLVLAGGCWNNKFCDDMTAIGFEQAKADICVFRKVVDGEAEMVVVGHVDDILAHAKDHATIDRFAAELGQKFKLKDMGDARYYMGCHITRNRKAR*LKIDQHLFVESMLETFNIKKSSKIPATSGVPTLSKADGPWNPEEKEGMRKFPYREAVGVLMGTATMMQPDIASAVRAVA-------------VMKIMEYFFHMKDWGIIYGGQGCGLCIEAYTD*NFGFCLDTR*SVSGMMLMLVKGAIS*YSRMQQMTASGTSEAEYIALSEAVK*VIFFRHIQEFMELSMRVGAVNVFDENKGTIKLTTNKHANCKTKHINVKHHIVKDVSDAQNVRVAYVRSEDQHADLFTKPL 1293
V +K + K ++GK++ +K RLVA+GF Q+ NV Y + SP P L+H++VKQ + +D+E+++ + S + + +AIYGL +G W D + GFEQ KAD CVFRK+VD M++V +VDDIL D + A L +KF K++G+ +++ GC I R+ +A L+I Q +++SM+E F++K +S+IPAT G GP +E+ G ++P REA+G +M +T +PD++ AVRAVA + KI+ Y +D GI Y +G GL + Y D ++ D R SVSG+ + +S S+ Q + + ++EAEYIA E VK +F R + F+ ++ V ++N+G I L N ++ +TKHI+V++H ++ + + ++ V +V + +QHADL TK L
Sbjct: 1161 VSSKWCFSWKTNKEGKIDTFKARLVARGFSQIPNVDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDE-DCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADL-----GPKREDEEGG--EWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQ-RGSGLGLAVYVDASYADTEDRR-SVSGLATTVGGTVVSHGSKTQSIVSLSSTEAEYIAAGEGVKEALFVRAVLSFVAPETSGSSIKVLEDNQGAIALVQNPLSSGRTKHIDVRYHFIRGLFRSGDISVKFVPTTEQHADLLTKAL 1608
BLAST of mRNA_H-elongata_contig15471.3594.1 vs. uniprot
Match: A0A6H5JN00_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN00_9PHAE) HSP 1 Score: 254 bits (648), Expect = 4.810e-71 Identity = 156/458 (34.06%), Postives = 252/458 (55.02%), Query Frame = 1
Query: 4 VGTKMLYKKKVEQDGKVEKYKYRLVAQGFWQVENVHYTETYSPTPDE---------------ELHHFNVKQVFLKVDIDDEIYIAISEEYLRLSGAVEQLNKAIYGLVLAGGCWNNKFCDDMTAIGFEQAKADICVFRKVVDGEAEMVVVGHVDDILAHAKDHATIDRFAAELGQKFKLKDMGDARYYMGCHITRNRKAR*LKIDQHLFVESMLETFNIKKSSKIPATSGVPTLSKADGPWNPEEKEGMRKFPYREAVGVLMGTATMMQPDIASAVRAVA-------------VMKIMEYFFHMKDWGIIYGGQGCGLCIEAYTD*NFGFCLDTR*SVSGMMLMLVKGAIS*YSRMQQMTASGTSEAEYIALSEAVK*VIFFRHIQEFMELSMRVGAVNVFDENKGTIKLTTNKHANCKTKHINVKHHIVKDVSDAQNVRVAYVRSEDQHADLFTKPL 1293
V +K + K ++GK++ +K RLVA+GF Q+ NV Y + SP P L+H++VKQ + +D+E+++ + S + + +AIYGL +G W D + GFEQ KAD CVFRK+VD M++V +VDDIL D + A L +KF K++G+ +++ GC I R+ +A L+I Q +++SM+E F++K +S+IPAT G GP +E+ G ++P REA+G +M +T +PD++ AVRAVA + KI+ Y +D GI Y +G GL + Y D ++ D R SVSG+ + +S S+ Q + + ++EAEYIA E VK +F R + F+ ++ V ++N+G I L N ++ +TKHI+V++H ++ + + ++ V +V + +QHADL TK L
Sbjct: 1181 VSSKWCFSWKTNKEGKIDTFKARLVARGFSQIPNVDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDQVVVMIIVIYVDDILVAGSDE-DCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADL-----GPKREDEEGG--EWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQ-RGSGLGLAVYVDASYADTEDRR-SVSGLATTVGGTVVSHGSKTQSIVSLSSTEAEYIAAGEGVKEALFVRAVLSFVAPETSGSSIKVLEDNQGAIALVQNPLSSGRTKHIDVRYHFIRGLFRSGDISVKFVPTTEQHADLLTKAL 1628
BLAST of mRNA_H-elongata_contig15471.3594.1 vs. uniprot
Match: A0A6H5KF60_9PHAE (Uncharacterized protein n=12 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF60_9PHAE) HSP 1 Score: 254 bits (648), Expect = 4.880e-71 Identity = 156/458 (34.06%), Postives = 252/458 (55.02%), Query Frame = 1
Query: 4 VGTKMLYKKKVEQDGKVEKYKYRLVAQGFWQVENVHYTETYSPTPDE---------------ELHHFNVKQVFLKVDIDDEIYIAISEEYLRLSGAVEQLNKAIYGLVLAGGCWNNKFCDDMTAIGFEQAKADICVFRKVVDGEAEMVVVGHVDDILAHAKDHATIDRFAAELGQKFKLKDMGDARYYMGCHITRNRKAR*LKIDQHLFVESMLETFNIKKSSKIPATSGVPTLSKADGPWNPEEKEGMRKFPYREAVGVLMGTATMMQPDIASAVRAVA-------------VMKIMEYFFHMKDWGIIYGGQGCGLCIEAYTD*NFGFCLDTR*SVSGMMLMLVKGAIS*YSRMQQMTASGTSEAEYIALSEAVK*VIFFRHIQEFMELSMRVGAVNVFDENKGTIKLTTNKHANCKTKHINVKHHIVKDVSDAQNVRVAYVRSEDQHADLFTKPL 1293
V +K + K ++GK++ +K RLVA+GF Q+ NV Y + SP P L+H++VKQ + +D+E+++ + S + + +AIYGL +G W D + GFEQ KAD CVFRK+VD M++V +VDDIL D + A L +KF K++G+ +++ GC I R+ +A L+I Q +++SM+E F++K +S+IPAT G GP +E+ G ++P REA+G +M +T +PD++ AVRAVA + KI+ Y +D GI Y +G GL + Y D ++ D R SVSG+ + +S S+ Q + + ++EAEYIA E VK +F R + F+ ++ V ++N+G I L N ++ +TKHI+V++H ++ + + ++ V +V + +QHADL TK L
Sbjct: 1324 VSSKWCFSWKTNKEGKIDTFKARLVARGFSQIPNVDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDE-DCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADL-----GPKREDEEGG--EWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQ-RGSGLGLAVYVDASYADTEDRR-SVSGLATTVGGTVVSHGSKTQSIVSLSSTEAEYIAAGEGVKEALFVRAVLSFVAPETSGSSIKVLEDNQGAIALVQNPLSSGRTKHIDVRYHFIRGLFRSGDISVKFVPTTEQHADLLTKAL 1771
BLAST of mRNA_H-elongata_contig15471.3594.1 vs. uniprot
Match: A0A6H5JLN0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLN0_9PHAE) HSP 1 Score: 237 bits (605), Expect = 4.060e-70 Identity = 137/396 (34.60%), Postives = 221/396 (55.81%), Query Frame = 1
Query: 148 LHHFNVKQVFLKVDIDDEIYIAISEEYLRLSGAVEQLNKAIYGLVLAGGCWNNKFCDDMTAIGFEQAKADICVFRKVVDGEAEMVVVGHVDDILAHAKDHATIDRFAAELGQKFKLKDMGDARYYMGCHITRNRKAR*LKIDQHLFVESMLETFNIKKSSKIPATSGVPTLSKADGPWNPEEKEGMRKFPYREAVGVLMGTATMMQPDIASAVRAVAV-------------MKIMEYFFHMKDWGIIYG-GQGCGLCIEAYTD*NFGFCLDTR*SVSGMMLMLVKGAIS*YSRMQQMTASGTSEAEYIALSEAVK*VIFFRHIQEFMELSMRVGAVNVFDENKGTIKLTTNKHANCKTKHINVKHHIVKDVSDAQNVRVAYVRSEDQHADLFTKPL 1293
L HF++KQ F++ D+D+++++ + E RLSG + +LNK++YGL A W++ + +GF Q AD CVFR + +G + +V HVDDI + ++ D+F +L +K++GD R+Y GC R+ A LKI Q + E + F ++ +IP G+ LS+ D + E + +P+RE +G LM AT +PDIA+AVRAVA + I+ Y D GI + G GL +E + D ++ R SVSG ++M G IS +SR Q+ T+EAEY++L++ +K V+F R + FM + + VF++N+G I+L N +N +KHI+V+HH ++++ + + + +V S QHAD TK L
Sbjct: 35 LRHFDIKQAFVQSDLDEDVFMRLPEGCGRLSGMIVKLNKSLYGLKQASRQWHSHLARCLICLGFIQCMADTCVFRLIEEGRVVVTLVVHVDDIFSIGEEERC-DQFGRDLNTMVPVKNLGDLRWYSGCFYERDWDAGTLKISQQTYAEELGMEFGVEYGKEIPLPVGL-KLSEFD------QDEEVVSWPFRELIGSLMWLATQTRPDIANAVRAVARYCASPKEIHWRAGLGILGYVVRTSDLGITFRRGSVAGLSMEVFVDADYASKAADRRSVSGGLVMCGGGCISWFSRTQKCVTLSTTEAEYVSLADVMKEVLFLRQVWRFMLPEAGMPCIPVFEDNQGAIQLAQNPISNSNSKHIDVRHHFIRELVGRKEISIFHVESAYQHADFLTKAL 422
BLAST of mRNA_H-elongata_contig15471.3594.1 vs. uniprot
Match: A0A6H5JFG2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFG2_9PHAE) HSP 1 Score: 235 bits (600), Expect = 4.190e-69 Identity = 139/397 (35.01%), Postives = 220/397 (55.42%), Query Frame = 1
Query: 145 ELHHFNVKQVFLKVDIDDEIYIAISEEYLRLSGAVEQLNKAIYGLVLAGGCWNNKFCDDMTAIGFEQAKADICVFRKVVDGEAEMVVVGHVDDILAHAKDHATIDRFAAELGQKFKLKDMGDARYYMGCHITRNRKAR*LKIDQHLFVESMLETFNIKKSSKIPATSGVPTLSKADGPWNPEEKEGMRKFPYREAVGVLMGTATMMQPDIASAVRAVA-------------VMKIMEYFFHMKDWGIIYG-GQGCGLCIEAYTD*NFGFCLDTR*SVSGMMLMLVKGAIS*YSRMQQMTASGTSEAEYIALSEAVK*VIFFRHIQEFMELSMRVGAVNVFDENKGTIKLTTNKHANCKTKHINVKHHIVKDVSDAQNVRVAYVRSEDQHADLFTKPL 1293
+L HF+V+Q F++ ++++++Y+ + + LSG + +L K++YGL A W+ + A+GFEQ AD CVFR + DG +++V HVDDI A + D+F A+L + +K++G+ R+Y GC RN++ L I Q F + + + + +P +SGV LS D E +FP+RE VG LM AT +PDIA+AVRAVA M I+ Y +GI + G G ++ Y D +F R SVSG ++ GA+S +SR Q+ T+EAEY+AL + VK ++F R I FM + + + VF++N+G I+L N +N +KHI+V+HH ++++ + + + V +V S Q AD TK L
Sbjct: 58 DLCHFDVEQAFVRSELEEDVYMRLPQGCGALSGMIVKLGKSLYGLRQASRQWHAMLKRCLVALGFEQCMADACVFRLIEDGCVVLILVVHVDDIFA-VGERERCDKFGADLNKSVPVKNLGELRWYSGCFYERNKETGRLTISQQTFTDELAAEYGVVGGRSVPMSSGV-KLSDFDA------DEVATEFPFRELVGSLMWLATQTRPDIANAVRAVARYCASPKLVHWNAAMDILGYARRTSHFGISFQRGTVEGFSLQGYADADFASKAADRRSVSGGIVTCGGGAVSWFSRTQKCVTLSTTEAEYVALGDVVKEILFLRQIWRFMLPQVGMPCIPVFEDNQGAIQLAQNPISNSNSKHIDVRHHFLRELVERKEISVIHVPSPYQRADFLTKSL 446
BLAST of mRNA_H-elongata_contig15471.3594.1 vs. uniprot
Match: A0A6H5JCG0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCG0_9PHAE) HSP 1 Score: 236 bits (603), Expect = 1.340e-68 Identity = 149/458 (32.53%), Postives = 242/458 (52.84%), Query Frame = 1
Query: 4 VGTKMLYKKKVEQDGKVEKYKYRLVAQGFWQVENVHYTETYSPTPDE---------------ELHHFNVKQVFLKVDIDDEIYIAISEEYLRLSGAVEQLNKAIYGLVLAGGCWNNKFCDDMTAIGFEQAKADICVFRKVVDGEAEMVVVGHVDDILAHAKDHATIDRFAAELGQKFKLKDMGDARYYMGCHITRNRKAR*LKIDQHLFVESMLETFNIKKSSKIPATSGVPTLSKADGPWNPEEKEGMRKFPYREAVGVLMGTATMMQPDIASAVRAVA-------------VMKIMEYFFHMKDWGIIYGGQGCGLCIEAYTD*NFGFCLDTR*SVSGMMLMLVKGAIS*YSRMQQMTASGTSEAEYIALSEAVK*VIFFRHIQEFMELSMRVGAVNVFDENKGTIKLTTNKHANCKTKHINVKHHIVKDVSDAQNVRVAYVRSEDQHADLFTKPL 1293
V +K + K +DGK+EK+K RLVA+GF Q+ NV Y + SP P +L+H++VKQ F +D+++++ + S V + +AIYGL +G W D + GFEQ KAD CVFRK+ D D IL D A L + F KD+G+ ++ GC + R+ +A L+I Q +++S++ F+++ +S IPA+ GV GP +E G ++P REA+G +M +T +PDI+ AVRAVA ++KI+ Y +D GI Y +G GL + Y D ++ D R SVSG+ + IS S+ Q + + ++EAEYIA E VK +F R + F+ ++ V ++N+G + L N ++ ++KHI+V++H ++ + + ++ + +V + +QHAD+ TK L
Sbjct: 45 VSSKWRFTWKTNKDGKIEKFKARLVARGFSQIPNVDYFHSSSPCPSSASIKLMLAVANEKSLKLNHWDVKQAFTHAKLDEDVFLRLPAGCGEKSHKVVKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMKDDVVXXXXXXXXDXILVAGSDD-DCKELLASLNKAFPTKDLGECVWFDGCAVERDLEAGTLRISQTAYIDSIVNRFDVQSTSSIPASPGVDI-----GPKRDDESGG--EWPVREAIGSMMWVSTFSRPDISFAVRAVARHAHAPAERHWKAIVKILAYLKETRDLGITYE-RGSGLGLAVYVDASYADAEDRR-SVSGLATTVGGTVISHGSKTQAIVSLSSTEAEYIAAGEGVKEALFVRAVLSFIAPETSGSSIQVLEDNQGAMALVQNPLSSARSKHIDVRYHFIRGLFRSGDISIKFVSTSEQHADMLTKAL 492
BLAST of mRNA_H-elongata_contig15471.3594.1 vs. uniprot
Match: A0A6H5KQB8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQB8_9PHAE) HSP 1 Score: 237 bits (605), Expect = 2.500e-68 Identity = 137/396 (34.60%), Postives = 221/396 (55.81%), Query Frame = 1
Query: 148 LHHFNVKQVFLKVDIDDEIYIAISEEYLRLSGAVEQLNKAIYGLVLAGGCWNNKFCDDMTAIGFEQAKADICVFRKVVDGEAEMVVVGHVDDILAHAKDHATIDRFAAELGQKFKLKDMGDARYYMGCHITRNRKAR*LKIDQHLFVESMLETFNIKKSSKIPATSGVPTLSKADGPWNPEEKEGMRKFPYREAVGVLMGTATMMQPDIASAVRAVAV-------------MKIMEYFFHMKDWGIIYG-GQGCGLCIEAYTD*NFGFCLDTR*SVSGMMLMLVKGAIS*YSRMQQMTASGTSEAEYIALSEAVK*VIFFRHIQEFMELSMRVGAVNVFDENKGTIKLTTNKHANCKTKHINVKHHIVKDVSDAQNVRVAYVRSEDQHADLFTKPL 1293
L HF++KQ F++ D+D+++++ + E RLSG + +LNK++YGL A W++ + +GF Q AD CVFR + +G + +V HVDDI + ++ D+F +L +K++GD R+Y GC R+ A LKI Q + E + F ++ +IP G+ LS+ D + E + +P+RE +G LM AT +PDIA+AVRAVA + I+ Y D GI + G GL +E + D ++ R SVSG ++M G IS +SR Q+ T+EAEY++L++ +K V+F R + FM + + VF++N+G I+L N +N +KHI+V+HH ++++ + + + +V S QHAD TK L
Sbjct: 209 LRHFDIKQAFVQSDLDEDVFMRLPEGCGRLSGMIVKLNKSLYGLKQASRQWHSHLARCLICLGFIQCMADTCVFRLIEEGRVVVTLVVHVDDIFSIGEEERC-DQFGRDLNTMVPVKNLGDLRWYSGCFYERDWDAGTLKISQQTYAEELGMEFGVEYGKEIPLPVGL-KLSEFD------QDEEVVSWPFRELIGSLMWLATQTRPDIANAVRAVARYCASPKEIHWRAGLGILGYVVRTSDLGITFRRGSVAGLSMEVFVDADYASKAADRRSVSGGLVMCGGGCISWFSRTQKCVTLSTTEAEYVSLADVMKEVLFLRQVWRFMLPEAGMPCIPVFEDNQGAIQLAQNPISNSNSKHIDVRHHFIRELVGRKEISIFHVESAYQHADFLTKAL 596
BLAST of mRNA_H-elongata_contig15471.3594.1 vs. uniprot
Match: A0A6H5KKK1_9PHAE (Integrase catalytic domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKK1_9PHAE) HSP 1 Score: 236 bits (602), Expect = 1.100e-65 Identity = 146/460 (31.74%), Postives = 248/460 (53.91%), Query Frame = 1
Query: 1 VVGTKMLYKKKVEQDGKVEKYKYRLVAQGFWQVENVHYTETYSPTPDE---------------ELHHFNVKQVFLKVDIDDEIYIAISEEYLRLSGAVEQLNKAIYGLVLAGGCWNNKFCDDMTAIGFEQAKADICVFRKVVDGEAEMVVVGHVDDILAHAKDHATIDRFAAELGQKFKLKDMGDARYYMGCHITRNRKAR*LKIDQHLFVESMLETFNIKKSSKIPATSGVPTLSKADGPWNPEEKEGMRKFPYREAVGVLMGTATMMQPDIASAVRAVA-------------VMKIMEYFFHMKDWGIIYG-GQGCGLCIEAYTD*NFGFCLDTR*SVSGMMLMLVKGAIS*YSRMQQMTASGTSEAEYIALSEAVK*VIFFRHIQEFMELSMRVGAVNVFDENKGTIKLTTNKHANCKTKHINVKHHIVKDVSDAQNVRVAYVRSEDQHADLFTKPL 1293
V+ + ++K K ++ GK+ K K RLVA+GF Q V Y ET+SPT + EL H++++Q F++ ++D E+++ + +SG V +LNK++YGL A + + ++ IGFEQ+ +D CV R ++ E +V HVDDIL +A + + A LG K++G+ R+++GC R+R+A +++ Q ++ S+LE FN+ ++S IPA+ S E EG P+RE VG LM A +PDI++AVRAVA KI+ Y + + Y D +F + R SVSG ++++ + S+ Q+ + TSEAEY+A+ + VK +F + +F+ S + ++V ++N+G I L N ++ ++KHI+V+HH ++++++ + V +V SE+QHAD+ TK L
Sbjct: 492 VIDARWVFKWKADETGKIVKAKARLVAKGFKQKYGVDYLETFSPTANAASHRLVVALACKYNLELLHWDIEQAFVQSELDYEVFMKLPPGCGSMSGKVVRLNKSLYGLKQASRTFYKRLVSELKRIGFEQSMSDPCVLRFMMGDEVVGMVAIHVDDIL-YAGTKSLAEVVVAALGDSLPTKNLGEVRFFLGCAFVRDREAGTIEMSQESYIRSVLERFNVCRTSSIPASPTNDYRSVM-------EDEGAGDVPFREVVGSLMWIANQTRPDISNAVRAVARHSHEPKKSHWKAAQKILNYLLETAHLTLKFKPDNSVDASTLVYVDADFASKANDRRSVSGAIVLVASMPVVWISKTQKCVSQSTSEAEYLAMGDGVKEALFVNGMLQFLRPSAKPRKIDVLEDNEGAIALAENPLSSSRSKHIDVRHHFLRNLTEEGVIEVTHVPSEEQHADILTKAL 943
BLAST of mRNA_H-elongata_contig15471.3594.1 vs. uniprot
Match: A0A6H5KN43_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KN43_9PHAE) HSP 1 Score: 231 bits (589), Expect = 1.430e-65 Identity = 146/454 (32.16%), Postives = 241/454 (53.08%), Query Frame = 1
Query: 31 KVEQDGKVEKYKYRLVAQGFWQVENVHYTETYSPTP---------------DEELHHFNVKQVFLKVDIDDEIYIAISEEYLRLSGAVEQLNKAIYGLVLAGGCWNNKFCDDMTAIGFEQAKADICVFRKVVDGEAEMVVVGHVDDILAHAKDHATIDRFAA----ELGQKFKLKDMGDARYYMGCHITRNRKAR*LKIDQHLFVESMLETFNIKKSSKIPATSGVPTLSKADGPWNPEEKEGMRKFPYREAVGVLMGTATMMQPDIASAVRAVA-------------VMKIMEYFFHMKDWGIIYGGQGC-GLCIEAYTD*NFGFCLDTR*SVSGMMLMLVKGAIS*YSRMQQMTASGTSEAEYIALSEAVK*VIFFRHIQEFMELSMRVGAVNVFDENKGTIKLTTNKHANCKTKHINVKHHIVKDVSDAQNVRVAYVRSEDQHADLFTKPL 1293
+V GK+ K K RLVA+GF Q V Y ET+SPT D E HF+++Q F++ ++D E+++ + ++G V +L+K++YGL A ++ + D+ IGFEQ+ +D CV ++ E ++ HVDDIL +A I+R A LG K++G+ R+++GC R+R+A +++ Q ++ S+LE FN+ ++S IPA+ S E EG P+R+ VG LM A +PDI++AVRAVA KI+ Y + Y + Y D +F R S SG ++++ ++ SR Q+ T+EAEY+A+ + VK +F + + EF+ S R+G + V ++N+G I L N ++C +KHI+V+HH+ +++++ + + +V SE QHAD+ TK L
Sbjct: 203 RVSSKGKIVKAKARLVAKGFKQKHGVDYLETFSPTANAASIRLLVALACKYDLEFLHFDIEQAFVQSELDHEVFMKLPPGCESMTGKVVRLDKSLYGLRQASRTFHKRLVSDLKRIGFEQSLSDPCVLHFMMGDEVLGMIAIHVDDIL-----YAGIERLAEMVVEALGDSLPTKNLGEVRFFLGCAFARDREAGTIEMSQESYIRSVLERFNVCRTSSIPASLTNDYRSVI-------EDEGAGDVPFRDVVGSLMWIANQTRPDISNAVRAVARHSHEPNKSHWKAAQKILNYLLETAHLTLKYKQDTMVDVGTLVYVDADFASEATDRRSDSGALVLVADCLVAWISRTQKCVTLSTTEAEYVAMGDGVKEALFVKGMLEFLRPSDRIGKIQVREDNEGAIALAENPLSSCNSKHIDVRHHLFRNLTEEGVLEIRHVSSEGQHADILTKAL 644 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig15471.3594.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig15471.3594.1 >prot_H-elongata_contig15471.3594.1 ID=prot_H-elongata_contig15471.3594.1|Name=mRNA_H-elongata_contig15471.3594.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=182bp MLYKKKVEQDGKVEKYKYRLVAQGFWQVENVHYTETYSPTPDEELHHFNVback to top mRNA from alignment at H-elongata_contig15471:619..1968- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig15471.3594.1 ID=mRNA_H-elongata_contig15471.3594.1|Name=mRNA_H-elongata_contig15471.3594.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1350bp|location=Sequence derived from alignment at H-elongata_contig15471:619..1968- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig15471:619..1968- >mRNA_H-elongata_contig15471.3594.1 ID=mRNA_H-elongata_contig15471.3594.1|Name=mRNA_H-elongata_contig15471.3594.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1092bp|location=Sequence derived from alignment at H-elongata_contig15471:619..1968- (Himanthalia elongata Himel1 dioecious)back to top |