mRNA_H-elongata_contig154693.3591.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig154693.3591.1
Unique NamemRNA_H-elongata_contig154693.3591.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig154693.3591.1 vs. uniprot
Match: A0A6H5JC10_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JC10_9PHAE)

HSP 1 Score: 123 bits (308), Expect = 1.770e-29
Identity = 67/164 (40.85%), Postives = 102/164 (62.20%), Query Frame = 1
Query:    1 KSRMAARGSGQIHNIDFSETFSPTLSAVSVNIAVAVANEKDWLLRQLEIPQGFI*AHLDEAIYMKLPAGCGDMSGEVVPQLRDVHGLRQTRRKSLVGCSSAKT----GMEQSKADPCVYRKVVGREVTLIICVHVDDLVVTAKDKETFDAFYAQSKGVFPVNDM 480
            K+R+ ARG  QI N+D+  + SP  S+ S+ + +AVANEK   L   ++ Q +  A LDE +++KLPAGCGD S E+    R ++GL+Q+ R+   G  +A T    G EQ KADPCV+RK+V   V +II ++VDD++V   D++  +   + SK  FP  ++
Sbjct:  356 KARLVARGFSQIPNVDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHEIAKAERAIYGLKQSGRQW--GYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDEDCEELLASLSKK-FPTKNL 516          
BLAST of mRNA_H-elongata_contig154693.3591.1 vs. uniprot
Match: A0A6H5JN00_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN00_9PHAE)

HSP 1 Score: 123 bits (308), Expect = 1.930e-29
Identity = 66/165 (40.00%), Postives = 104/165 (63.03%), Query Frame = 1
Query:    1 KSRMAARGSGQIHNIDFSETFSPTLSAVSVNIAVAVANEKDWLLRQLEIPQGFI*AHLDEAIYMKLPAGCGDMSGEVVPQLRDVHGLRQTRRKSLVGCSSAKT----GMEQSKADPCVYRKVVGREVTLIICVHVDDLVVTAKDKETFDAFYAQSKGVFPVNDMG 483
            K+R+ ARG  QI N+D+  + SP  S+ S+ + +AVANEK   L   ++ Q +  A LDE +++KLPAGCGD S ++    R ++GL+Q+ R+   G  +A T    G EQ KADPCV+RK+V + V +II ++VDD++V   D++  +   + +K  FP  ++G
Sbjct: 1201 KARLVARGFSQIPNVDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQW--GYHAADTLVENGFEQCKADPCVFRKMVDQVVVMIIVIYVDDILVAGSDEDCEELLASLNKK-FPTKNLG 1362          
BLAST of mRNA_H-elongata_contig154693.3591.1 vs. uniprot
Match: A0A6H5JU90_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JU90_9PHAE)

HSP 1 Score: 122 bits (307), Expect = 2.460e-29
Identity = 66/165 (40.00%), Postives = 103/165 (62.42%), Query Frame = 1
Query:    1 KSRMAARGSGQIHNIDFSETFSPTLSAVSVNIAVAVANEKDWLLRQLEIPQGFI*AHLDEAIYMKLPAGCGDMSGEVVPQLRDVHGLRQTRRKSLVGCSSAKT----GMEQSKADPCVYRKVVGREVTLIICVHVDDLVVTAKDKETFDAFYAQSKGVFPVNDMG 483
            K+R+ ARG  QI N+D+  + SP  S+ S+ + +AVANEK   L   ++ Q +  A LDE +++KLPAGCGD S ++    R ++GL+Q+ R+   G  +A T    G EQ KADPCV+RK+V   V +II ++VDD++V   D++  +   + +K  FP  ++G
Sbjct:  463 KARLVARGVSQIPNVDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQW--GYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDEDCEELLASLNKK-FPTKNLG 624          
BLAST of mRNA_H-elongata_contig154693.3591.1 vs. uniprot
Match: A0A6H5JTV6_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTV6_9PHAE)

HSP 1 Score: 122 bits (307), Expect = 2.530e-29
Identity = 66/165 (40.00%), Postives = 103/165 (62.42%), Query Frame = 1
Query:    1 KSRMAARGSGQIHNIDFSETFSPTLSAVSVNIAVAVANEKDWLLRQLEIPQGFI*AHLDEAIYMKLPAGCGDMSGEVVPQLRDVHGLRQTRRKSLVGCSSAKT----GMEQSKADPCVYRKVVGREVTLIICVHVDDLVVTAKDKETFDAFYAQSKGVFPVNDMG 483
            K+R+ ARG  QI N+D+  + SP  S+ S+ + +AVANEK   L   ++ Q +  A LDE +++KLPAGCGD S ++    R ++GL+Q+ R+   G  +A T    G EQ KADPCV+RK+V   V +II ++VDD++V   D++  +   + +K  FP  ++G
Sbjct:  602 KARLVARGFSQIPNVDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQW--GYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDEDCEELLASLNKK-FPTKNLG 763          
BLAST of mRNA_H-elongata_contig154693.3591.1 vs. uniprot
Match: A0A6H5KSG8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSG8_9PHAE)

HSP 1 Score: 122 bits (307), Expect = 2.570e-29
Identity = 66/165 (40.00%), Postives = 103/165 (62.42%), Query Frame = 1
Query:    1 KSRMAARGSGQIHNIDFSETFSPTLSAVSVNIAVAVANEKDWLLRQLEIPQGFI*AHLDEAIYMKLPAGCGDMSGEVVPQLRDVHGLRQTRRKSLVGCSSAKT----GMEQSKADPCVYRKVVGREVTLIICVHVDDLVVTAKDKETFDAFYAQSKGVFPVNDMG 483
            K+R+ ARG  QI N+D+  + SP  S+ S+ + +AVANEK   L   ++ Q +  A LDE +++KLPAGCGD S ++    R ++GL+Q+ R+   G  +A T    G EQ KADPCV+RK+V   V +II ++VDD++V   D++  +   + +K  FP  ++G
Sbjct:  802 KARLVARGFSQIPNVDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQW--GYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDEDCEELLASLNKK-FPTKNLG 963          
BLAST of mRNA_H-elongata_contig154693.3591.1 vs. uniprot
Match: A0A6H5JZQ8_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZQ8_9PHAE)

HSP 1 Score: 122 bits (307), Expect = 2.630e-29
Identity = 66/165 (40.00%), Postives = 103/165 (62.42%), Query Frame = 1
Query:    1 KSRMAARGSGQIHNIDFSETFSPTLSAVSVNIAVAVANEKDWLLRQLEIPQGFI*AHLDEAIYMKLPAGCGDMSGEVVPQLRDVHGLRQTRRKSLVGCSSAKT----GMEQSKADPCVYRKVVGREVTLIICVHVDDLVVTAKDKETFDAFYAQSKGVFPVNDMG 483
            K+R+ ARG  QI N+D+  + SP  S+ S+ + +AVANEK   L   ++ Q +  A LDE +++KLPAGCGD S ++    R ++GL+Q+ R+   G  +A T    G EQ KADPCV+RK+V   V +II ++VDD++V   D++  +   + +K  FP  ++G
Sbjct: 1181 KARLVARGFSQIPNVDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQW--GYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDEDCEELLASLNKK-FPTKNLG 1342          
BLAST of mRNA_H-elongata_contig154693.3591.1 vs. uniprot
Match: A0A6H5KF60_9PHAE (Uncharacterized protein n=12 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF60_9PHAE)

HSP 1 Score: 122 bits (307), Expect = 2.640e-29
Identity = 66/165 (40.00%), Postives = 103/165 (62.42%), Query Frame = 1
Query:    1 KSRMAARGSGQIHNIDFSETFSPTLSAVSVNIAVAVANEKDWLLRQLEIPQGFI*AHLDEAIYMKLPAGCGDMSGEVVPQLRDVHGLRQTRRKSLVGCSSAKT----GMEQSKADPCVYRKVVGREVTLIICVHVDDLVVTAKDKETFDAFYAQSKGVFPVNDMG 483
            K+R+ ARG  QI N+D+  + SP  S+ S+ + +AVANEK   L   ++ Q +  A LDE +++KLPAGCGD S ++    R ++GL+Q+ R+   G  +A T    G EQ KADPCV+RK+V   V +II ++VDD++V   D++  +   + +K  FP  ++G
Sbjct: 1344 KARLVARGFSQIPNVDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQW--GYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDEDCEELLASLNKK-FPTKNLG 1505          
BLAST of mRNA_H-elongata_contig154693.3591.1 vs. uniprot
Match: A0A6H5K738_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K738_9PHAE)

HSP 1 Score: 115 bits (288), Expect = 4.030e-29
Identity = 67/163 (41.10%), Postives = 93/163 (57.06%), Query Frame = 1
Query:   10 MAARGSGQIHNIDFSETFSPTLSAVSVNIAVAVANEKDWLLRQLEIPQGFI*AHLDEAIYMKLPAGCGDMSGEVVPQLRDVHGLRQTRRKSLVGCSSA--KTGMEQSKADPCVYRKVVGREVTLIICVHVDDLVVTAKDKETFDAFYAQSKGVFPVNDMGNLS 492
            M ARG  QI  IDF  + S   SA S+    AVA EK   L   ++ Q +I A L E IY++ P GCG MSG+VV   R ++G +Q+ R+     + A  + G EQ + DPCV+RKVV REV  +I ++VDD+ V A + E  +  +A     FPV D+G  +
Sbjct:    1 MVARGLSQIPGIDFHHSSSACPSAASMKAVTAVATEKGKKLAHWDVNQAYIHAKLKEEIYLRFPEGCGSMSGKVVKVERALYGPKQSGREWGFEAADALVENGYEQCRVDPCVFRKVVDREVVGLIVIYVDDIFVAADEGER-EVLFASLNKKFPVKDLGECT 162          
BLAST of mRNA_H-elongata_contig154693.3591.1 vs. uniprot
Match: A0A6H5JLS1_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLS1_9PHAE)

HSP 1 Score: 120 bits (301), Expect = 1.160e-28
Identity = 66/165 (40.00%), Postives = 102/165 (61.82%), Query Frame = 1
Query:    1 KSRMAARGSGQIHNIDFSETFSPTLSAVSVNIAVAVANEKDWLLRQLEIPQGFI*AHLDEAIYMKLPAGCGDMSGEVVPQLRDVHGLRQTRRKSLVGCSSAKT----GMEQSKADPCVYRKVVGREVTLIICVHVDDLVVTAKDKETFDAFYAQSKGVFPVNDMG 483
            K+R+ ARG  +I N+D+  + SP  S+ S+ + +AVANEK   L   ++ Q +  A LDE I+++LPAGCGD S ++    R ++GL+Q+ R+   G  +A T    G EQ KADPCV+RK+V   V +II ++VDD++V   D++  +   A  K  FP  ++G
Sbjct:  227 KARLVARGFSKIPNVDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEIFLRLPAGCGDKSHKIGKAERAIYGLKQSGRQW--GYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDMLVAESDEDC-EELLASLKKKFPTKNLG 388          
BLAST of mRNA_H-elongata_contig154693.3591.1 vs. uniprot
Match: A0A6H5JK49_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JK49_9PHAE)

HSP 1 Score: 120 bits (300), Expect = 1.620e-28
Identity = 70/166 (42.17%), Postives = 100/166 (60.24%), Query Frame = 1
Query:    1 KSRMAARGSGQIHNIDFSETFSPTLSAVSVNIAVAVANEKDWLLRQLEIPQGFI*AHLDEAIYMKLPAGCGDMSGEVVPQLRDVHGLRQTRRKSLVGCSSA--KTGMEQSKADPCVYRKVVGREVTLIICVHVDDLVVTAKDKETFDAFYAQSKGVFPVNDMGNLS 492
            K+RM ARG  QI  IDF  + S   SA S+   +AVA EK   L   ++ Q +I A L E IY++LP GCG MSG+VV   R ++GL+Q+ R+     + A  + G EQ + DPCV+RKVV  EV  +I ++VD+++V A + E  + F + +K  FPV  MG  +
Sbjct:  348 KARMVARGFSQIPGIDFHHSSSAFPSAASIKTVIAVATEKGKKLAHWDVKQAYIHAKLKEEIYLRLPEGCGSMSGKVVKVERALYGLKQSGREWGFEVADALIENGCEQCRVDPCVFRKVVDGEVVGLIVIYVDEILVAADEGEREELFASLNKK-FPVKYMGECT 512          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig154693.3591.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JC10_9PHAE1.770e-2940.85Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JN00_9PHAE1.930e-2940.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JU90_9PHAE2.460e-2940.00Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JTV6_9PHAE2.530e-2940.00Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KSG8_9PHAE2.570e-2940.00Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JZQ8_9PHAE2.630e-2940.00Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KF60_9PHAE2.640e-2940.00Uncharacterized protein n=12 Tax=Ectocarpus sp. CC... [more]
A0A6H5K738_9PHAE4.030e-2941.10Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JLS1_9PHAE1.160e-2840.00Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JK49_9PHAE1.620e-2842.17Reverse transcriptase Ty1/copia-type domain-contai... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig154693contigH-elongata_contig154693:370..864 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size495
Cds size306
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929913.0231817-CDS-H-elongata_contig154693:369..6751622929913.0231817-CDS-H-elongata_contig154693:369..675Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig154693 370..675 -
1691679205.9517224-CDS-H-elongata_contig154693:369..6751691679205.9517224-CDS-H-elongata_contig154693:369..675Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig154693 370..675 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929913.0372438-UTR-H-elongata_contig154693:675..8641622929913.0372438-UTR-H-elongata_contig154693:675..864Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig154693 676..864 -
1691679205.9621122-UTR-H-elongata_contig154693:675..8641691679205.9621122-UTR-H-elongata_contig154693:675..864Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig154693 676..864 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig154693.3591.1prot_H-elongata_contig154693.3591.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig154693 370..675 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig154693.3591.1

>prot_H-elongata_contig154693.3591.1 ID=prot_H-elongata_contig154693.3591.1|Name=mRNA_H-elongata_contig154693.3591.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=102bp
MKLPAGCGDMSGEVVPQLRDVHGLRQTRRKSLVGCSSAKTGMEQSKADPC
VYRKVVGREVTLIICVHVDDLVVTAKDKETFDAFYAQSKGVFPVNDMGNL
S*
back to top

mRNA from alignment at H-elongata_contig154693:370..864-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig154693.3591.1 ID=mRNA_H-elongata_contig154693.3591.1|Name=mRNA_H-elongata_contig154693.3591.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=495bp|location=Sequence derived from alignment at H-elongata_contig154693:370..864- (Himanthalia elongata Himel1 dioecious)
AAATCCAGGATGGCAGCCAGGGGTTCTGGTCAGATTCATAATATAGATTT TTCGGAGACGTTTTCTCCTACCCTATCAGCTGTTAGTGTGAATATCGCTG TCGCTGTAGCGAATGAAAAAGACTGGTTGTTGCGGCAGCTAGAAATACCA CAGGGGTTTATCTAGGCGCATTTGGACGAAGCTATATACATGAAGCTTCC CGCTGGTTGCGGGGACATGAGCGGTGAAGTCGTTCCCCAGCTACGTGATG TGCACGGACTCCGACAGACTCGTAGAAAATCTTTAGTAGGGTGCTCCTCA GCAAAAACTGGCATGGAGCAGAGTAAGGCTGACCCGTGTGTGTACCGGAA GGTGGTAGGTAGGGAGGTAACCCTCATAATATGTGTTCATGTTGACGACC TCGTCGTGACCGCAAAGGATAAGGAGACGTTCGATGCATTTTATGCGCAG TCAAAGGGGGTATTTCCTGTGAATGACATGGGTAATCTATCTTAG
back to top

Coding sequence (CDS) from alignment at H-elongata_contig154693:370..864-

>mRNA_H-elongata_contig154693.3591.1 ID=mRNA_H-elongata_contig154693.3591.1|Name=mRNA_H-elongata_contig154693.3591.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=612bp|location=Sequence derived from alignment at H-elongata_contig154693:370..864- (Himanthalia elongata Himel1 dioecious)
ATGAAGCTTCCCGCTGGTTGCGGGGACATGAGCGGTGAAGTCGTTCCCCA
GCTACGTGATGTGCACGGACTCCGACAGACTCGTAGAAAATCTTTAGTAG
GGTGCTCCTCAGCAAAAACTGGCATGGAGCAGAGTAAGGCTGACCCGTGT
GTGTACCGGAAGGTGGTAGGTAGGGAGGTAACCCTCATAATATGTGTTCA
TGTTGACGACCTCGTCGTGACCGCAAAGGATAAGGAGACGTTCGATGCAT
TTTATGCGCAGTCAAAGGGGGTATTTCCTGTGAATGACATGGGTAATCTA
TCTTAGATGAAGCTTCCCGCTGGTTGCGGGGACATGAGCGGTGAAGTCGT
TCCCCAGCTACGTGATGTGCACGGACTCCGACAGACTCGTAGAAAATCTT
TAGTAGGGTGCTCCTCAGCAAAAACTGGCATGGAGCAGAGTAAGGCTGAC
CCGTGTGTGTACCGGAAGGTGGTAGGTAGGGAGGTAACCCTCATAATATG
TGTTCATGTTGACGACCTCGTCGTGACCGCAAAGGATAAGGAGACGTTCG
ATGCATTTTATGCGCAGTCAAAGGGGGTATTTCCTGTGAATGACATGGGT
AATCTATCTTAG
back to top