mRNA_H-elongata_contig154693.3591.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig154693.3591.1 vs. uniprot
Match: A0A6H5JC10_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JC10_9PHAE) HSP 1 Score: 123 bits (308), Expect = 1.770e-29 Identity = 67/164 (40.85%), Postives = 102/164 (62.20%), Query Frame = 1
Query: 1 KSRMAARGSGQIHNIDFSETFSPTLSAVSVNIAVAVANEKDWLLRQLEIPQGFI*AHLDEAIYMKLPAGCGDMSGEVVPQLRDVHGLRQTRRKSLVGCSSAKT----GMEQSKADPCVYRKVVGREVTLIICVHVDDLVVTAKDKETFDAFYAQSKGVFPVNDM 480
K+R+ ARG QI N+D+ + SP S+ S+ + +AVANEK L ++ Q + A LDE +++KLPAGCGD S E+ R ++GL+Q+ R+ G +A T G EQ KADPCV+RK+V V +II ++VDD++V D++ + + SK FP ++
Sbjct: 356 KARLVARGFSQIPNVDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHEIAKAERAIYGLKQSGRQW--GYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDEDCEELLASLSKK-FPTKNL 516
BLAST of mRNA_H-elongata_contig154693.3591.1 vs. uniprot
Match: A0A6H5JN00_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN00_9PHAE) HSP 1 Score: 123 bits (308), Expect = 1.930e-29 Identity = 66/165 (40.00%), Postives = 104/165 (63.03%), Query Frame = 1
Query: 1 KSRMAARGSGQIHNIDFSETFSPTLSAVSVNIAVAVANEKDWLLRQLEIPQGFI*AHLDEAIYMKLPAGCGDMSGEVVPQLRDVHGLRQTRRKSLVGCSSAKT----GMEQSKADPCVYRKVVGREVTLIICVHVDDLVVTAKDKETFDAFYAQSKGVFPVNDMG 483
K+R+ ARG QI N+D+ + SP S+ S+ + +AVANEK L ++ Q + A LDE +++KLPAGCGD S ++ R ++GL+Q+ R+ G +A T G EQ KADPCV+RK+V + V +II ++VDD++V D++ + + +K FP ++G
Sbjct: 1201 KARLVARGFSQIPNVDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQW--GYHAADTLVENGFEQCKADPCVFRKMVDQVVVMIIVIYVDDILVAGSDEDCEELLASLNKK-FPTKNLG 1362
BLAST of mRNA_H-elongata_contig154693.3591.1 vs. uniprot
Match: A0A6H5JU90_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JU90_9PHAE) HSP 1 Score: 122 bits (307), Expect = 2.460e-29 Identity = 66/165 (40.00%), Postives = 103/165 (62.42%), Query Frame = 1
Query: 1 KSRMAARGSGQIHNIDFSETFSPTLSAVSVNIAVAVANEKDWLLRQLEIPQGFI*AHLDEAIYMKLPAGCGDMSGEVVPQLRDVHGLRQTRRKSLVGCSSAKT----GMEQSKADPCVYRKVVGREVTLIICVHVDDLVVTAKDKETFDAFYAQSKGVFPVNDMG 483
K+R+ ARG QI N+D+ + SP S+ S+ + +AVANEK L ++ Q + A LDE +++KLPAGCGD S ++ R ++GL+Q+ R+ G +A T G EQ KADPCV+RK+V V +II ++VDD++V D++ + + +K FP ++G
Sbjct: 463 KARLVARGVSQIPNVDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQW--GYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDEDCEELLASLNKK-FPTKNLG 624
BLAST of mRNA_H-elongata_contig154693.3591.1 vs. uniprot
Match: A0A6H5JTV6_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTV6_9PHAE) HSP 1 Score: 122 bits (307), Expect = 2.530e-29 Identity = 66/165 (40.00%), Postives = 103/165 (62.42%), Query Frame = 1
Query: 1 KSRMAARGSGQIHNIDFSETFSPTLSAVSVNIAVAVANEKDWLLRQLEIPQGFI*AHLDEAIYMKLPAGCGDMSGEVVPQLRDVHGLRQTRRKSLVGCSSAKT----GMEQSKADPCVYRKVVGREVTLIICVHVDDLVVTAKDKETFDAFYAQSKGVFPVNDMG 483
K+R+ ARG QI N+D+ + SP S+ S+ + +AVANEK L ++ Q + A LDE +++KLPAGCGD S ++ R ++GL+Q+ R+ G +A T G EQ KADPCV+RK+V V +II ++VDD++V D++ + + +K FP ++G
Sbjct: 602 KARLVARGFSQIPNVDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQW--GYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDEDCEELLASLNKK-FPTKNLG 763
BLAST of mRNA_H-elongata_contig154693.3591.1 vs. uniprot
Match: A0A6H5KSG8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSG8_9PHAE) HSP 1 Score: 122 bits (307), Expect = 2.570e-29 Identity = 66/165 (40.00%), Postives = 103/165 (62.42%), Query Frame = 1
Query: 1 KSRMAARGSGQIHNIDFSETFSPTLSAVSVNIAVAVANEKDWLLRQLEIPQGFI*AHLDEAIYMKLPAGCGDMSGEVVPQLRDVHGLRQTRRKSLVGCSSAKT----GMEQSKADPCVYRKVVGREVTLIICVHVDDLVVTAKDKETFDAFYAQSKGVFPVNDMG 483
K+R+ ARG QI N+D+ + SP S+ S+ + +AVANEK L ++ Q + A LDE +++KLPAGCGD S ++ R ++GL+Q+ R+ G +A T G EQ KADPCV+RK+V V +II ++VDD++V D++ + + +K FP ++G
Sbjct: 802 KARLVARGFSQIPNVDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQW--GYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDEDCEELLASLNKK-FPTKNLG 963
BLAST of mRNA_H-elongata_contig154693.3591.1 vs. uniprot
Match: A0A6H5JZQ8_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZQ8_9PHAE) HSP 1 Score: 122 bits (307), Expect = 2.630e-29 Identity = 66/165 (40.00%), Postives = 103/165 (62.42%), Query Frame = 1
Query: 1 KSRMAARGSGQIHNIDFSETFSPTLSAVSVNIAVAVANEKDWLLRQLEIPQGFI*AHLDEAIYMKLPAGCGDMSGEVVPQLRDVHGLRQTRRKSLVGCSSAKT----GMEQSKADPCVYRKVVGREVTLIICVHVDDLVVTAKDKETFDAFYAQSKGVFPVNDMG 483
K+R+ ARG QI N+D+ + SP S+ S+ + +AVANEK L ++ Q + A LDE +++KLPAGCGD S ++ R ++GL+Q+ R+ G +A T G EQ KADPCV+RK+V V +II ++VDD++V D++ + + +K FP ++G
Sbjct: 1181 KARLVARGFSQIPNVDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQW--GYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDEDCEELLASLNKK-FPTKNLG 1342
BLAST of mRNA_H-elongata_contig154693.3591.1 vs. uniprot
Match: A0A6H5KF60_9PHAE (Uncharacterized protein n=12 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF60_9PHAE) HSP 1 Score: 122 bits (307), Expect = 2.640e-29 Identity = 66/165 (40.00%), Postives = 103/165 (62.42%), Query Frame = 1
Query: 1 KSRMAARGSGQIHNIDFSETFSPTLSAVSVNIAVAVANEKDWLLRQLEIPQGFI*AHLDEAIYMKLPAGCGDMSGEVVPQLRDVHGLRQTRRKSLVGCSSAKT----GMEQSKADPCVYRKVVGREVTLIICVHVDDLVVTAKDKETFDAFYAQSKGVFPVNDMG 483
K+R+ ARG QI N+D+ + SP S+ S+ + +AVANEK L ++ Q + A LDE +++KLPAGCGD S ++ R ++GL+Q+ R+ G +A T G EQ KADPCV+RK+V V +II ++VDD++V D++ + + +K FP ++G
Sbjct: 1344 KARLVARGFSQIPNVDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQW--GYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDEDCEELLASLNKK-FPTKNLG 1505
BLAST of mRNA_H-elongata_contig154693.3591.1 vs. uniprot
Match: A0A6H5K738_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K738_9PHAE) HSP 1 Score: 115 bits (288), Expect = 4.030e-29 Identity = 67/163 (41.10%), Postives = 93/163 (57.06%), Query Frame = 1
Query: 10 MAARGSGQIHNIDFSETFSPTLSAVSVNIAVAVANEKDWLLRQLEIPQGFI*AHLDEAIYMKLPAGCGDMSGEVVPQLRDVHGLRQTRRKSLVGCSSA--KTGMEQSKADPCVYRKVVGREVTLIICVHVDDLVVTAKDKETFDAFYAQSKGVFPVNDMGNLS 492
M ARG QI IDF + S SA S+ AVA EK L ++ Q +I A L E IY++ P GCG MSG+VV R ++G +Q+ R+ + A + G EQ + DPCV+RKVV REV +I ++VDD+ V A + E + +A FPV D+G +
Sbjct: 1 MVARGLSQIPGIDFHHSSSACPSAASMKAVTAVATEKGKKLAHWDVNQAYIHAKLKEEIYLRFPEGCGSMSGKVVKVERALYGPKQSGREWGFEAADALVENGYEQCRVDPCVFRKVVDREVVGLIVIYVDDIFVAADEGER-EVLFASLNKKFPVKDLGECT 162
BLAST of mRNA_H-elongata_contig154693.3591.1 vs. uniprot
Match: A0A6H5JLS1_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLS1_9PHAE) HSP 1 Score: 120 bits (301), Expect = 1.160e-28 Identity = 66/165 (40.00%), Postives = 102/165 (61.82%), Query Frame = 1
Query: 1 KSRMAARGSGQIHNIDFSETFSPTLSAVSVNIAVAVANEKDWLLRQLEIPQGFI*AHLDEAIYMKLPAGCGDMSGEVVPQLRDVHGLRQTRRKSLVGCSSAKT----GMEQSKADPCVYRKVVGREVTLIICVHVDDLVVTAKDKETFDAFYAQSKGVFPVNDMG 483
K+R+ ARG +I N+D+ + SP S+ S+ + +AVANEK L ++ Q + A LDE I+++LPAGCGD S ++ R ++GL+Q+ R+ G +A T G EQ KADPCV+RK+V V +II ++VDD++V D++ + A K FP ++G
Sbjct: 227 KARLVARGFSKIPNVDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEIFLRLPAGCGDKSHKIGKAERAIYGLKQSGRQW--GYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDMLVAESDEDC-EELLASLKKKFPTKNLG 388
BLAST of mRNA_H-elongata_contig154693.3591.1 vs. uniprot
Match: A0A6H5JK49_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JK49_9PHAE) HSP 1 Score: 120 bits (300), Expect = 1.620e-28 Identity = 70/166 (42.17%), Postives = 100/166 (60.24%), Query Frame = 1
Query: 1 KSRMAARGSGQIHNIDFSETFSPTLSAVSVNIAVAVANEKDWLLRQLEIPQGFI*AHLDEAIYMKLPAGCGDMSGEVVPQLRDVHGLRQTRRKSLVGCSSA--KTGMEQSKADPCVYRKVVGREVTLIICVHVDDLVVTAKDKETFDAFYAQSKGVFPVNDMGNLS 492
K+RM ARG QI IDF + S SA S+ +AVA EK L ++ Q +I A L E IY++LP GCG MSG+VV R ++GL+Q+ R+ + A + G EQ + DPCV+RKVV EV +I ++VD+++V A + E + F + +K FPV MG +
Sbjct: 348 KARMVARGFSQIPGIDFHHSSSAFPSAASIKTVIAVATEKGKKLAHWDVKQAYIHAKLKEEIYLRLPEGCGSMSGKVVKVERALYGLKQSGREWGFEVADALIENGCEQCRVDPCVFRKVVDGEVVGLIVIYVDEILVAADEGEREELFASLNKK-FPVKYMGECT 512 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig154693.3591.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig154693.3591.1 >prot_H-elongata_contig154693.3591.1 ID=prot_H-elongata_contig154693.3591.1|Name=mRNA_H-elongata_contig154693.3591.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=102bp MKLPAGCGDMSGEVVPQLRDVHGLRQTRRKSLVGCSSAKTGMEQSKADPCback to top mRNA from alignment at H-elongata_contig154693:370..864- Legend: UTRCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig154693.3591.1 ID=mRNA_H-elongata_contig154693.3591.1|Name=mRNA_H-elongata_contig154693.3591.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=495bp|location=Sequence derived from alignment at H-elongata_contig154693:370..864- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig154693:370..864- >mRNA_H-elongata_contig154693.3591.1 ID=mRNA_H-elongata_contig154693.3591.1|Name=mRNA_H-elongata_contig154693.3591.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=612bp|location=Sequence derived from alignment at H-elongata_contig154693:370..864- (Himanthalia elongata Himel1 dioecious)back to top |