mRNA_H-elongata_contig154608.3588.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig154608.3588.1
Unique NamemRNA_H-elongata_contig154608.3588.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig154608.3588.1 vs. uniprot
Match: D8LSU9_ECTSI (Acetyltransferase 1-like n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LSU9_ECTSI)

HSP 1 Score: 209 bits (533), Expect = 8.130e-61
Identity = 105/118 (88.98%), Postives = 109/118 (92.37%), Query Frame = 1
Query:    1 WFELEWAEAQLRLGKPGLAMKKALAVHTHFEDFVEDQFDFHTYCMRKVTLRSYLGMLRMVDQLRSQKSYRRASALLVRAYLKLYDERP-RGGGADGSGLPDMTNMTAAEKKRVKAKVR 351
            WFELEWAEAQ+R GKPGLAMKKALAVHTHFEDFVEDQFDFHTYCMRKVTLRSYLGMLRMVD LRSQKSYRRASALLVRAYL+L+DERP   GG   +GLPDMTNMTAAEKKRVKAK R
Sbjct:  559 WFELEWAEAQIRAGKPGLAMKKALAVHTHFEDFVEDQFDFHTYCMRKVTLRSYLGMLRMVDDLRSQKSYRRASALLVRAYLRLHDERPGSAGGGGAAGLPDMTNMTAAEKKRVKAKAR 676          
BLAST of mRNA_H-elongata_contig154608.3588.1 vs. uniprot
Match: A0A835YWJ9_9STRA (Acetyltransferase 1-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YWJ9_9STRA)

HSP 1 Score: 127 bits (319), Expect = 1.010e-31
Identity = 62/111 (55.86%), Postives = 84/111 (75.68%), Query Frame = 1
Query:    1 WFELEWAEAQLRLGKPGLAMKKALAVHTHFEDFVEDQFDFHTYCMRKVTLRSYLGMLRMVDQLRSQKSYRRASALLVRAYLKLYDERPRGGGADGSGLPDMTNMTAAEKKR 333
            WFELEWAE+ +R GK GL +KKA AV  HF+DFVEDQ DFHTYCMRK+TLR+Y+ ML+M D +     +RRA+AL+++AYL ++ E+P+   A  S  PD + M+AA+KK+
Sbjct:  512 WFELEWAESHMRQGKLGLCLKKAFAVEHHFQDFVEDQVDFHTYCMRKMTLRAYVAMLKMEDTIYGHHFFRRAAALVIKAYLTIF-EQPQA--AASSAEPDYSGMSAADKKK 619          
BLAST of mRNA_H-elongata_contig154608.3588.1 vs. uniprot
Match: A0A7S2GKZ9_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2GKZ9_9STRA)

HSP 1 Score: 118 bits (295), Expect = 1.750e-28
Identity = 58/117 (49.57%), Postives = 83/117 (70.94%), Query Frame = 1
Query:    1 WFELEWAEAQLRLGKPGLAMKKALAVHTHFEDFVEDQFDFHTYCMRKVTLRSYLGMLRMVDQLRSQKSYRRASALLVRAYLKLYDERPRGGGADGSGLPDMTNMTAAEKKRVKAKVR 351
            W E+E+ EA LR  K G+A+KK LAV  HF DF++DQFDFHTYC+RK+TLR+Y+ +L+M D+++S K + RA+   V+ YL ++D  P+     G+  PD  +MT A++KR KAK R
Sbjct:  584 WVEIEYGEAGLRDKKYGVALKKFLAVEKHFNDFIDDQFDFHTYCLRKMTLRAYVSILQMNDRIQSHKFFHRAAVGAVKCYLAVFDA-PKTSDNSGAQSPDYASMTPAQRKREKAKAR 699          
BLAST of mRNA_H-elongata_contig154608.3588.1 vs. uniprot
Match: A0A830HB08_9CHLO (N-alpha-acetyltransferase 16, NatA auxiliary subunit n=1 Tax=Pycnococcus provasolii TaxID=41880 RepID=A0A830HB08_9CHLO)

HSP 1 Score: 115 bits (287), Expect = 2.090e-27
Identity = 61/136 (44.85%), Postives = 84/136 (61.76%), Query Frame = 1
Query:    1 WFELEWAEAQLRLGKPGLAMKKALAVHTHFEDFVEDQFDFHTYCMRKVTLRSYLGMLRMVDQLRSQKSYRRASALLVRAYLKLYDERPRGGG----------------------ADGSGL-PDMTNMTAAEKKRVK 339
            W+E+E      R G+ G A+KK +AV  H+ D  EDQFDFHTYC+RK+TLRSY+ MLRM D+L  +K+YRR ++  +R Y+KL+D++P G G                      ADG+ L PD  N+T AE+KR+K
Sbjct:  549 WYEIECGACHERQGELGKALKKYVAVTKHYADITEDQFDFHTYCVRKMTLRSYVEMLRMEDRLHREKAYRRGASGAIRVYVKLHDKKPSGAGGAGVLGAVVRPHARAADIAGRNADGAPLDPDDPNLTPAERKRIK 684          
BLAST of mRNA_H-elongata_contig154608.3588.1 vs. uniprot
Match: A0A2D4BJT2_PYTIN (Lipid-A-disaccharide synthase (Fragment) n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BJT2_PYTIN)

HSP 1 Score: 114 bits (286), Expect = 2.890e-27
Identity = 57/113 (50.44%), Postives = 78/113 (69.03%), Query Frame = 1
Query:    1 WFELEWAEAQLRLGKPGLAMKKALAVHTHFEDFVEDQFDFHTYCMRKVTLRSYLGMLRMVDQLRSQKSYRRASALLVRAYLKLYDERPRGGGADGSGLPDMTNMTAAEKKRVK 339
            W+EL    +QLR  K GLA+K+  AV  HF+DF+EDQFDFHTYC+RK+TLR+Y+GMLRM D++   K + RA+   ++ YL+L D   R     GSG  D + ++AAEKK+ K
Sbjct:  668 WYELTNGSSQLRQKKYGLALKRFFAVEKHFDDFIEDQFDFHTYCVRKMTLRAYVGMLRMCDEIYGHKFFTRAAHGAIQTYLELADNAERDAANGGSG--DSSGLSAAEKKKAK 778          
BLAST of mRNA_H-elongata_contig154608.3588.1 vs. uniprot
Match: A0A388M8A7_CHABU (Uncharacterized protein n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388M8A7_CHABU)

HSP 1 Score: 111 bits (278), Expect = 3.440e-26
Identity = 56/111 (50.45%), Postives = 78/111 (70.27%), Query Frame = 1
Query:    1 WFELEWAEAQLRLGKPGLAMKKALAVHTHFEDFVEDQFDFHTYCMRKVTLRSYLGMLRMVDQLRSQKSYRRASALLVRAYLKLYDERPRGGGADGSGLPDMTNMTAAEKKR 333
            W+EL   ++ LR G  G A+KK LAV  H++D  EDQFDFHTYC+RK+TLR+Y+ MLRM D+L S K + RA+A  VR YLK++D +P    A+ +    M +MT+AE+K+
Sbjct:  578 WYELASGDSHLRQGNFGKALKKYLAVEKHYQDMEEDQFDFHTYCLRKMTLRAYVKMLRMADRLHSHKFFCRAAAGAVRCYLKVFD-KPPSATAEEADAATMQSMTSAERKK 687          
BLAST of mRNA_H-elongata_contig154608.3588.1 vs. uniprot
Match: A0A7S3E888_9RHOD (Hypothetical protein (Fragment) n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S3E888_9RHOD)

HSP 1 Score: 104 bits (260), Expect = 4.340e-26
Identity = 48/117 (41.03%), Postives = 78/117 (66.67%), Query Frame = 1
Query:    1 WFELEWAEAQLRLGKPGLAMKKALAVHTHFEDFVEDQFDFHTYCMRKVTLRSYLGMLRMVDQLRSQKSYRRASALLVRAYLKLYDERPRGGGADGSGLPDMTNMTAAEKKRVKAKVR 351
            WFE E  +A +R+ +PGLA+K   AV  HFED +EDQFDFH+YC+RK T+RSY+ +L M D++RS K + RA+   +R ++ ++D   +  G+       +  ++ AE+K+ ++K+R
Sbjct:   51 WFECEIGDAYIRMKRPGLALKNFKAVERHFEDMIEDQFDFHSYCLRKETMRSYVNLLLMEDEIRSSKYFTRAAKAAIRLHIDMHDNPQQKDGSSEQAAA-LATLSLAERKKAQSKLR 166          
BLAST of mRNA_H-elongata_contig154608.3588.1 vs. uniprot
Match: A0A197JWL2_9FUNG (N-terminal acetyltransferase A, auxiliary subunit n=1 Tax=Linnemannia elongata AG-77 TaxID=1314771 RepID=A0A197JWL2_9FUNG)

HSP 1 Score: 110 bits (274), Expect = 1.180e-25
Identity = 56/117 (47.86%), Postives = 78/117 (66.67%), Query Frame = 1
Query:    1 WFELEWAEAQLRLGKPGLAMKKALAVHTHFEDFVEDQFDFHTYCMRKVTLRSYLGMLRMVDQLRSQKSYRRASALLVRAYLKLYDERPRGGGADGSGLPDMTNMTAAEKKRVKAKVR 351
            WF LE  E+ LR G+ G A+K+   +  HF D+ EDQFDFHTYC+RK+TLR+Y+ M+R+ DQLRS   Y RA+   V+ Y++L+D+       DGS   +M  MT AEKK+ ++K R
Sbjct:  489 WFSLEAGESNLRQGQIGRALKRFHQIDKHFNDYTEDQFDFHTYCLRKMTLRAYVSMVRLEDQLRSHPYYVRAAQDAVQCYVRLFDK------PDGSESEEMEGMTEAEKKKFRSKQR 599          
BLAST of mRNA_H-elongata_contig154608.3588.1 vs. uniprot
Match: A0A7S2LJ27_9STRA (Hypothetical protein (Fragment) n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2LJ27_9STRA)

HSP 1 Score: 106 bits (264), Expect = 2.190e-25
Identity = 58/114 (50.88%), Postives = 77/114 (67.54%), Query Frame = 1
Query:    1 WFELEWAEAQLRLGKPGLAMKKALAVHTHFEDFVEDQFDFHTYCMRKVTLRSYLGMLRMVDQLRSQKSYRRASALLVRAYLKLYDERPRGGGADGSGLPDMTNMTAAEKKRVKA 342
            W+ELE A +  R  K G ++KK  AV  HFED+ EDQFDFH+YC+RKVTLRSY+ +LR  D++  +KSYR+A+  L+  YL L+D  P     + S   D + MTAAEKK+ KA
Sbjct:  194 WYELEAAASFARQRKWGQSLKKYAAVEKHFEDYNEDQFDFHSYCIRKVTLRSYMSVLRFEDEIFGEKSYRKAAEGLIGIYLHLFDH-PEDAKVN-SKEQDYSKMTAAEKKKAKA 305          
BLAST of mRNA_H-elongata_contig154608.3588.1 vs. uniprot
Match: A0A433PPL9_9FUNG (NMDA receptor-regulated protein 1-domain-containing protein n=1 Tax=Endogone sp. FLAS-F59071 TaxID=2340872 RepID=A0A433PPL9_9FUNG)

HSP 1 Score: 109 bits (272), Expect = 2.190e-25
Identity = 59/117 (50.43%), Postives = 75/117 (64.10%), Query Frame = 1
Query:    1 WFELEWAEAQLRLGKPGLAMKKALAVHTHFEDFVEDQFDFHTYCMRKVTLRSYLGMLRMVDQLRSQKSYRRASALLVRAYLKLYDERPRGGGADGSGLPDMTNMTAAEKKRVKAKVR 351
            WF LE   A LRL + G A+K+  A+  HF D  +DQFDFH YC+RK TLR+YLGMLR+ DQLRS   Y +A    V AYL L+D RP+G   DG    ++  ++ AEKK+ K K R
Sbjct:  546 WFSLEEGNAHLRLNQLGRALKRFHAIDKHFTDITDDQFDFHMYCLRKTTLRAYLGMLRLEDQLRSHPYYVKAVQGAVEAYLYLFD-RPQGADEDG----ELAGLSEAEKKKAKNKAR 657          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig154608.3588.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LSU9_ECTSI8.130e-6188.98Acetyltransferase 1-like n=2 Tax=Ectocarpus TaxID=... [more]
A0A835YWJ9_9STRA1.010e-3155.86Acetyltransferase 1-like protein n=1 Tax=Tribonema... [more]
A0A7S2GKZ9_9STRA1.750e-2849.57Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A830HB08_9CHLO2.090e-2744.85N-alpha-acetyltransferase 16, NatA auxiliary subun... [more]
A0A2D4BJT2_PYTIN2.890e-2750.44Lipid-A-disaccharide synthase (Fragment) n=1 Tax=P... [more]
A0A388M8A7_CHABU3.440e-2650.45Uncharacterized protein n=1 Tax=Chara braunii TaxI... [more]
A0A7S3E888_9RHOD4.340e-2641.03Hypothetical protein (Fragment) n=1 Tax=Rhodosorus... [more]
A0A197JWL2_9FUNG1.180e-2547.86N-terminal acetyltransferase A, auxiliary subunit ... [more]
A0A7S2LJ27_9STRA2.190e-2550.88Hypothetical protein (Fragment) n=1 Tax=Leptocylin... [more]
A0A433PPL9_9FUNG2.190e-2550.43NMDA receptor-regulated protein 1-domain-containin... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig154608contigH-elongata_contig154608:239..1347 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score209.9
Seed ortholog evalue6.3e-52
Seed eggNOG ortholog2880.D8LSU9
Preferred nameNAA16
KEGG koko:K20792
EggNOG free text desc.N-terminal peptidyl-methionine acetylation
EggNOG OGsKOG1156@1,KOG1156@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03036
Hectar predicted targeting categoryother localisation
Exons2
Model size351
Cds size351
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929912.745706-CDS-H-elongata_contig154608:238..3791622929912.745706-CDS-H-elongata_contig154608:238..379Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig154608 239..379 +
1691679205.8378675-CDS-H-elongata_contig154608:238..3791691679205.8378675-CDS-H-elongata_contig154608:238..379Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig154608 239..379 +
1622929912.7649531-CDS-H-elongata_contig154608:1137..13471622929912.7649531-CDS-H-elongata_contig154608:1137..1347Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig154608 1138..1347 +
1691679205.8499596-CDS-H-elongata_contig154608:1137..13471691679205.8499596-CDS-H-elongata_contig154608:1137..1347Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig154608 1138..1347 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig154608.3588.1prot_H-elongata_contig154608.3588.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig154608 239..1347 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig154608.3588.1

>prot_H-elongata_contig154608.3588.1 ID=prot_H-elongata_contig154608.3588.1|Name=mRNA_H-elongata_contig154608.3588.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=117bp
WFELEWAEAQLRLGKPGLAMKKALAVHTHFEDFVEDQFDFHTYCMRKVTL
RSYLGMLRMVDQLRSQKSYRRASALLVRAYLKLYDERPRGGGADGSGLPD
MTNMTAAEKKRVKAKVR
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mRNA from alignment at H-elongata_contig154608:239..1347+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig154608.3588.1 ID=mRNA_H-elongata_contig154608.3588.1|Name=mRNA_H-elongata_contig154608.3588.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1109bp|location=Sequence derived from alignment at H-elongata_contig154608:239..1347+ (Himanthalia elongata Himel1 dioecious)
TGGTTCGAGCTCGAGTGGGCGGAGGCCCAGCTCCGCCTGGGCAAGCCTGG CCTTGCGATGAAGAAAGCGCTGGCGGTGCACACTCACTTCGAGGACTTCG TCGAGGACCAGTTCGACTTCCACACCTACTGCATGCGAAAGGTATGTATA GCAGGCCCCCGTTAATTTCCATAACGTTTTATTGCCTTTTGTTTAGCCGC ATACGATTTGAATTGATTACTGTATTATTAGTATTATTAAGATTAATATG ATTTAATTTCGTCCGCGCAAAGAGTAAAGCTACGCGACGTCCCACTGTTG TGTAGTGCCGAGGGCCAGAAGGCGTACGCGTGGCGGGTCTCGGGGCTATA CAGGAGCCCCCTCTCGCTGACACGCGCGCGTACACACACACGTACGCGCA AGCGTCAGCTCCTCGTGGTTTCCTGTTTGCGCCGTCCCCGGCGGACGAAG TCGTGATTTCCACGGGATCGAGAGTTGTGAAAGCATGTTCAAATGCCGGA AGCAAAATGAGCCAGGAACAAAGTTAATGGTGTTCCGACCCCTTAGAAAA TGGGGCTCACGACCTCCTCTGATACGCTGCAAAATCCATCTCAGCATCAG TCTATCCGTACCCGGCCGTTTCAAAGGCCTCCGCAATTTTTGCCGCTTTG CCTTTTCAGCGCTCTGATTAAACTGAAATACGCCTCCACTGAAATGAACA CTTATAAGCTCAGGGTCGCTTGGAGCGAAGTGGTGTGTTTTTTGGGGAAA AGAGATGGCATAAATTTAATAATAACAGCGCGTCGTTTCGTTTCGTTCCG TAACGACTTTTATCACTTTCTCAGTCTCTCCTTTAAAAAATATTTTTCTG TTTGTTTGCTTTTTTCTGTCACTTTTTGTCTCTCTTTGAGTACACGCAGG TGACCCTTCGTTCCTACCTGGGAATGCTCCGCATGGTGGACCAGCTGCGC TCTCAGAAGAGCTACCGTCGCGCGTCCGCGTTGCTGGTCCGCGCCTACCT GAAGCTATACGACGAGCGTCCCCGGGGTGGGGGCGCCGATGGGAGCGGGC TGCCGGACATGACCAACATGACCGCGGCGGAGAAGAAGCGGGTCAAGGCC AAGGTAAGA
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Coding sequence (CDS) from alignment at H-elongata_contig154608:239..1347+

>mRNA_H-elongata_contig154608.3588.1 ID=mRNA_H-elongata_contig154608.3588.1|Name=mRNA_H-elongata_contig154608.3588.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=702bp|location=Sequence derived from alignment at H-elongata_contig154608:239..1347+ (Himanthalia elongata Himel1 dioecious)
TGGTTCGAGCTCGAGTGGGCGGAGGCCCAGCTCCGCCTGGGCAAGCCTGG
CCTTGCGATGAAGAAAGCGCTGGCGGTGCACACTCACTTCGAGGACTTCG
TCGAGGACCAGTTCGACTTCCACACCTACTGCATGCGAAAGTGGTTCGAG
CTCGAGTGGGCGGAGGCCCAGCTCCGCCTGGGCAAGCCTGGCCTTGCGAT
GAAGAAAGCGCTGGCGGTGCACACTCACTTCGAGGACTTCGTCGAGGACC
AGTTCGACTTCCACACCTACTGCATGCGAAAGGTGACCCTTCGTTCCTAC
CTGGGAATGCTCCGCATGGTGGACCAGCTGCGCTCTCAGAAGAGCTACCG
TCGCGCGTCCGCGTTGCTGGTCCGCGCCTACCTGAAGCTATACGACGAGC
GTCCCCGGGGTGGGGGCGCCGATGGGAGCGGGCTGCCGGACATGACCAAC
ATGACCGCGGCGGAGAAGAAGCGGGTCAAGGCCAAGGTAAGAGTGACCCT
TCGTTCCTACCTGGGAATGCTCCGCATGGTGGACCAGCTGCGCTCTCAGA
AGAGCTACCGTCGCGCGTCCGCGTTGCTGGTCCGCGCCTACCTGAAGCTA
TACGACGAGCGTCCCCGGGGTGGGGGCGCCGATGGGAGCGGGCTGCCGGA
CATGACCAACATGACCGCGGCGGAGAAGAAGCGGGTCAAGGCCAAGGTAA
GA
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