mRNA_H-elongata_contig15453.3586.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig15453.3586.1
Unique NamemRNA_H-elongata_contig15453.3586.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig15453.3586.1 vs. uniprot
Match: D7FV38_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FV38_ECTSI)

HSP 1 Score: 155 bits (392), Expect = 6.660e-43
Identity = 104/234 (44.44%), Postives = 132/234 (56.41%), Query Frame = 1 
Query:    1 SLFLYLSLSKECDGGLRVWLLVAVCVTAVCGTLGAIFHGRRDANRPSRFFDRGDNAADXXXXXXTYLDGDSAVNGSAHFGPRGM--DLGPLDAPGRTAPSGLPV-----LAEGEEFAVNGDVREGTIRAVEGGEQDPIDDGITSAHGSSVSVQLATRAASSLQLQYFGPGPKMYPDAIFLVLVLSQWFLAAWSVVGAVLYFRLFGGGRSCSRELPITPSEAVLQGYARATRALC 681
            S+ L L  +KECDGGLR WLL  VCVTA+C  LGAIFHGR +  RPSRF D  D+ A         +   SA  G+   G R    ++GP DA G    S + +     + EG      G V  G +   E       D+ I S   S++S +LA ++ SSLQ +YFGPGPK++PD IF +LV+SQWFLA WSVVGA LYFRLF G R+CS  L       V+ G+     A+C
Sbjct:   24 SVVLGLQWNKECDGGLRTWLLTTVCVTAICSGLGAIFHGRGNGTRPSRFLD--DDDAWGVDDDSINVSVSSAAGGT---GGRASPPEMGPEDANGNGKRSDIRITPPFKMEEGGGSGGKG-VNGGGMAGGEERRDSMGDESIVSGVPSTISHRLAAQS-SSLQHRYFGPGPKVFPDTIFFILVVSQWFLAGWSVVGAALYFRLFTGNRTCSPLLRHWTLLVVIIGFLSCLLAVC 250
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BLAST of mRNA_H-elongata_contig15453.3586.1 vs. uniprot
Match: A0A6H5K0Y0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0Y0_9PHAE)

HSP 1 Score: 113 bits (283), Expect = 3.940e-27
Identity = 80/203 (39.41%), Postives = 104/203 (51.23%), Query Frame = 1 
Query:   97 LGAIFHGRRDANRPSRFFDRGDNAADXXXXXXTYLDGDSAVNGSAHFGPRGMDLGPLDAPGRTAPSGLPVLAEGEEFAVNGDVREGTIRAVEGGEQ-DPI-DDGITSAHGSSVSVQLATRAASSLQLQYFGPGPKMYPDAIFLVLVLSQWFLAAWSVVGAVLYFRLFGGGRSCSRELPITPSEAVLQGYARATRALCVTSPMC 699
            LGA FHGR D  RPSRF D      D      +         G A       ++GP    G  +   +    + EE   +G  R        G E+ D + D+ I S   S++S +LA ++ SSLQ +YFGPGPK++PD IF +LV+SQWFLA WSVVGA LYFRLF G R CS  L       V+ G+     A+C +  MC
Sbjct:    2 LGATFHGRGDGTRPSRFLDDDAWGVDDDSINVSVSSAAGGTGGRASP----PEMGPEHTNGNGSDIRITPPFKMEEGGGDGGKRVNGXXMAGGEERRDSMGDESIVSGVPSTISHRLAAQS-SSLQHRYFGPGPKVFPDTIFFILVVSQWFLAGWSVVGAALYFRLFTGNRMCSPLLRHWTLLVVIIGFLSCLLAVCYSGIMC 199
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig15453.3586.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FV38_ECTSI6.660e-4344.44Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K0Y0_9PHAE3.940e-2739.41Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig15453contigH-elongata_contig15453:168..1816 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-12_005050.1
Exons3
Model size705
Cds size705
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig15453.3586.1prot_H-elongata_contig15453.3586.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig15453 168..1816 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929912.5980449-CDS-H-elongata_contig15453:167..3771622929912.5980449-CDS-H-elongata_contig15453:167..377Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15453 168..377 -
1691679205.787863-CDS-H-elongata_contig15453:167..3771691679205.787863-CDS-H-elongata_contig15453:167..377Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15453 168..377 -
1622929912.6197906-CDS-H-elongata_contig15453:948..10331622929912.6197906-CDS-H-elongata_contig15453:948..1033Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15453 949..1033 -
1691679205.798829-CDS-H-elongata_contig15453:948..10331691679205.798829-CDS-H-elongata_contig15453:948..1033Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15453 949..1033 -
1622929912.6343355-CDS-H-elongata_contig15453:1406..18161622929912.6343355-CDS-H-elongata_contig15453:1406..1816Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15453 1407..1816 -
1691679205.8087509-CDS-H-elongata_contig15453:1406..18161691679205.8087509-CDS-H-elongata_contig15453:1406..1816Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15453 1407..1816 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig15453.3586.1

>prot_H-elongata_contig15453.3586.1 ID=prot_H-elongata_contig15453.3586.1|Name=mRNA_H-elongata_contig15453.3586.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=235bp
SLFLYLSLSKECDGGLRVWLLVAVCVTAVCGTLGAIFHGRRDANRPSRFF
DRGDNAADDDDDDDTYLDGDSAVNGSAHFGPRGMDLGPLDAPGRTAPSGL
PVLAEGEEFAVNGDVREGTIRAVEGGEQDPIDDGITSAHGSSVSVQLATR
AASSLQLQYFGPGPKMYPDAIFLVLVLSQWFLAAWSVVGAVLYFRLFGGG
RSCSRELPITPSEAVLQGYARATRALCVTSPMCI*
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mRNA from alignment at H-elongata_contig15453:168..1816-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig15453.3586.1 ID=mRNA_H-elongata_contig15453.3586.1|Name=mRNA_H-elongata_contig15453.3586.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1649bp|location=Sequence derived from alignment at H-elongata_contig15453:168..1816- (Himanthalia elongata Himel1 dioecious)
TCCCTCTTTCTGTATCTTTCTCTCTCCAAGGAATGTGATGGGGGCCTTAG
GGTCTGGCTGCTCGTGGCAGTGTGCGTGACGGCCGTGTGCGGCACCCTCG
GCGCGATATTCCATGGTAGAAGGGACGCCAACCGACCGTCGCGCTTCTTC
GATCGCGGTGACAACGCCGCTGACGATGACGACGACGACGATACCTACCT
CGACGGCGATAGCGCGGTAAACGGGAGCGCCCACTTCGGACCGCGGGGCA
TGGACCTTGGTCCATTAGATGCCCCCGGCAGGACGGCACCGAGCGGGTTG
CCGGTTCTGGCGGAGGGGGAGGAATTTGCTGTGAATGGGGATGTGAGGGA
GGGAACGATCAGGGCAGTGGAAGGCGGCGAGCAGGATCCCATCGACGATG
GGATAACATCGTAAGTAAATATATATACCAGGTATATACATTTGGCGGTG
TTTCTTCGTTAGAAACGAACGGGTTTGCGCGGAAACGGTAGCCGCATCCG
AAAAATGTCGACGGTCGTCTCTTAAAGGCATGTGGGTTTGCCATTTTCTT
TATCGAGTTTAGAGTTTGAAGCGCTGCCAGCCAGGTTCACTCAACAGAAA
CGCCTCATTGAAGTCAGGAAGCATCCCAAAGCTATTGTCCGCTGACTGGC
GTGAGCGCGAATATAGACGGGCGTCTAATACGCGAAGTCGTTTTAAAACT
AATCGAGTATATCGTCACTCATCGCACGACCATGAAACACTTTCCGTGTT
TGAGTCCTTTTTGTTTTGTTTTTGTTCGACCAGGGCGCACGGAAGCAGCG
TTTCGGTGCAGCTTGCGACGCGCGCAGCATCGTCACTCCAACTTCAATAT
TTCGGCCCGGGACCTAAGGTTGGCCATAGAAACGGAAGAAAGGAAAGGGC
GCTGACCCACGATAAAGCATCACTGGAGCCTGTCCACGAGTTCTAAAAAC
TTATATATTAGGAATATGGGGTTGCTTCAAATTGTCCCTTGACACGTTCT
CCGATAGGCCCACGTCCCGTCAGCCACACGCAGTTCGTTAACAGTTGTGT
GTGTTCTATTTTTTGTGTTTCTTTTTCTTTGGAGATGTCGCTTTTTCCGA
GTATTTGTATTATGCACCATTGTCGTTTCCTTTTGTTTTGGAAAGTACGT
TGAACGTTTTTTCCTTTCGAATGGTGTTTTTTCTACCTTGGGGCTGGATT
TTGACATCAGCTTATGTGAGAATTCAATCAATCAACCAATTAAATAGCCC
AGACAAGCGGGATGCGTACAGGCGACGTCATAGCCTTGGTAGAGCGTGGT
TCGTGTCGAGGCCGCCCCGAGACGATTAGCAGTTTTGTGCCGTCACCACT
TGATGCTGGCGTGCTATTCTCGCGACCCCTCCGTGGCTAGGCGAGACTGG
ATTAATTCCTTGCTGTTTTTTTTACCCATCCCACGGCAGATGTACCCGGA
CGCTATTTTCCTGGTCTTGGTGCTGAGCCAGTGGTTCCTCGCGGCTTGGA
GCGTGGTCGGAGCGGTGCTGTACTTTAGACTCTTTGGGGGAGGAAGGTCA
TGCTCTCGTGAGTTGCCAATCACGCCAAGTGAAGCTGTGCTGCAAGGATA
CGCGCGTGCCACGCGTGCGCTGTGCGTAACCTCCCCCATGTGCATATAA
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Coding sequence (CDS) from alignment at H-elongata_contig15453:168..1816-

>mRNA_H-elongata_contig15453.3586.1 ID=mRNA_H-elongata_contig15453.3586.1|Name=mRNA_H-elongata_contig15453.3586.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1410bp|location=Sequence derived from alignment at H-elongata_contig15453:168..1816- (Himanthalia elongata Himel1 dioecious)
TCCCTCTTTCTGTATCTTTCTCTCTCCAAGGAATGTGATGGGGGCCTTAG
GGTCTGGCTGCTCGTGGCAGTGTGCGTGACGGCCGTGTGCGGCACCCTCG
GCGCGATATTCCATGGTAGAAGGGACGCCAACCGACCGTCGCGCTTCTTC
GATCGCGGTGACAACGCCGCTGACGATGACGACGACGACGATACCTACCT
CGACGGCGATAGCGCGGTAAACGGGAGCGCCCACTTCGGACCGCGGGGCA
TGGACCTTGGTCCATTAGATGCCCCCGGCAGGACGGCACCGAGCGGGTTG
CCGGTTCTGGCGGAGGGGGAGGAATTTGCTGTGAATGGGGATGTGAGGGA
GGGAACGATCAGGGCAGTGGAAGGCGGCGAGCAGGATCCCATCGACGATG
GGATAACATCTCCCTCTTTCTGTATCTTTCTCTCTCCAAGGAATGTGATG
GGGGCCTTAGGGTCTGGCTGCTCGTGGCAGTGTGCGTGACGGCCGTGTGC
GGCACCCTCGGCGCGATATTCCATGGTAGAAGGGACGCCAACCGACCGTC
GCGCTTCTTCGATCGCGGTGACAACGCCGCTGACGATGACGACGACGACG
ATACCTACCTCGACGGCGATAGCGCGGTAAACGGGAGCGCCCACTTCGGA
CCGCGGGGCATGGACCTTGGTCCATTAGATGCCCCCGGCAGGACGGCACC
GAGCGGGTTGCCGGTTCTGGCGGAGGGGGAGGAATTTGCTGTGAATGGGG
ATGTGAGGGAGGGAACGATCAGGGCAGTGGAAGGCGGCGAGCAGGATCCC
ATCGACGATGGGATAACATCGGCGCACGGAAGCAGCGTTTCGGTGCAGCT
TGCGACGCGCGCAGCATCGTCACTCCAACTTCAATATTTCGGCCCGGGAC
CTAAGGGCGCACGGAAGCAGCGTTTCGGTGCAGCTTGCGACGCGCGCAGC
ATCGTCACTCCAACTTCAATATTTCGGCCCGGGACCTAAGATGTACCCGG
ACGCTATTTTCCTGGTCTTGGTGCTGAGCCAGTGGTTCCTCGCGGCTTGG
AGCGTGGTCGGAGCGGTGCTGTACTTTAGACTCTTTGGGGGAGGAAGGTC
ATGCTCTCGTGAGTTGCCAATCACGCCAAGTGAAGCTGTGCTGCAAGGAT
ACGCGCGTGCCACGCGTGCGCTGTGCGTAACCTCCCCCATGTGCATATAA
ATGTACCCGGACGCTATTTTCCTGGTCTTGGTGCTGAGCCAGTGGTTCCT
CGCGGCTTGGAGCGTGGTCGGAGCGGTGCTGTACTTTAGACTCTTTGGGG
GAGGAAGGTCATGCTCTCGTGAGTTGCCAATCACGCCAAGTGAAGCTGTG
CTGCAAGGATACGCGCGTGCCACGCGTGCGCTGTGCGTAACCTCCCCCAT
GTGCATATAA
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