mRNA_H-elongata_contig15447.3584.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig15447.3584.1
Unique NamemRNA_H-elongata_contig15447.3584.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig15447.3584.1 vs. uniprot
Match: A0A6H5L6K6_9PHAE (Kinesin motor domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6K6_9PHAE)

HSP 1 Score: 78.2 bits (191), Expect = 7.740e-14
Identity = 40/68 (58.82%), Postives = 46/68 (67.65%), Query Frame = 1 
Query:   40 GGAGHALWTGVAKMLRAQSDKRDWMAESCLRRCLVINNRLYGPDHPEVAADMSNLAEVLMDKSDFDGA 243
            G +  AL   V  MLR QSD RD MAE CLRR L I+ +L GPDHPEVA D+SNLAEVL D  + + A
Sbjct: 2193 GESAVALLASVVAMLREQSDARDAMAEPCLRRSLEIHEKLLGPDHPEVATDLSNLAEVLQDNGEIEHA 2260
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig15447.3584.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5L6K6_9PHAE7.740e-1458.82Kinesin motor domain-containing protein n=1 Tax=Ec... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig15447contigH-elongata_contig15447:1567..4284 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons5
Model size472
Cds size471
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig15447.3584.1prot_H-elongata_contig15447.3584.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig15447 1567..4284 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929912.1909213-CDS-H-elongata_contig15447:1566..16591622929912.1909213-CDS-H-elongata_contig15447:1566..1659Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15447 1567..1659 +
1691679205.6450849-CDS-H-elongata_contig15447:1566..16591691679205.6450849-CDS-H-elongata_contig15447:1566..1659Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15447 1567..1659 +
1622929912.2373729-CDS-H-elongata_contig15447:1946..20091622929912.2373729-CDS-H-elongata_contig15447:1946..2009Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15447 1947..2009 +
1691679205.6539211-CDS-H-elongata_contig15447:1946..20091691679205.6539211-CDS-H-elongata_contig15447:1946..2009Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15447 1947..2009 +
1622929912.2521498-CDS-H-elongata_contig15447:2397..24671622929912.2521498-CDS-H-elongata_contig15447:2397..2467Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15447 2398..2467 +
1691679205.6625085-CDS-H-elongata_contig15447:2397..24671691679205.6625085-CDS-H-elongata_contig15447:2397..2467Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15447 2398..2467 +
1622929912.272699-CDS-H-elongata_contig15447:3147..32721622929912.272699-CDS-H-elongata_contig15447:3147..3272Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15447 3148..3272 +
1691679205.6739416-CDS-H-elongata_contig15447:3147..32721691679205.6739416-CDS-H-elongata_contig15447:3147..3272Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15447 3148..3272 +
1622929912.2926054-CDS-H-elongata_contig15447:4164..42841622929912.2926054-CDS-H-elongata_contig15447:4164..4284Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15447 4165..4284 +
1691679205.6831427-CDS-H-elongata_contig15447:4164..42841691679205.6831427-CDS-H-elongata_contig15447:4164..4284Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15447 4165..4284 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig15447.3584.1

>prot_H-elongata_contig15447.3584.1 ID=prot_H-elongata_contig15447.3584.1|Name=mRNA_H-elongata_contig15447.3584.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=157bp
DTVVPSVSPPCPAGGAGHALWTGVAKMLRAQSDKRDWMAESCLRRCLVIN
NRLYGPDHPEVAADMSNLAEVLMDKSDFDGAEPLVRRALEIRTRFLDPFH
ADVGHSRLNLSLIQRNKGDNQRACLNQALANKIWSRAFGGGAEERASKND
CSRRSEG
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mRNA from alignment at H-elongata_contig15447:1567..4284+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig15447.3584.1 ID=mRNA_H-elongata_contig15447.3584.1|Name=mRNA_H-elongata_contig15447.3584.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2718bp|location=Sequence derived from alignment at H-elongata_contig15447:1567..4284+ (Himanthalia elongata Himel1 dioecious)
GACACAGTAGTACCTTCTGTGAGCCCGCCTTGTCCAGCGGGAGGCGCGGG
TCATGCCTTATGGACAGGCGTTGCCAAGATGCTTCGAGCGCAGGTATGAT
CACCGCGCCTAGGAGCTCGATCACCAGCAAGCCTTAAGTGGATTGGGGGA
GAGGAGGTTCCCTGCGCGATGCAACCAAAGTACGATTCCGTGGGTCGGGT
TCCCTAATGATTATCGCATGATTGTGTCGTGGAGAAGCCCACCGTTACAC
TGTACCAGTATACAGTACTTGTTGCGGTTGGTCGATTGATTTTTCCGTTG
CCGTTGCCGTCGGCCTAACTAACCTTCTGTCCCCGCGACTGTGTATGTGT
GTGTTTTTTGCGGGGGGGGTGGGGCGACAGAGCGACAAGCGAGATTGGAT
GGCGGAGTCCTGCCTCCGACGGTGCTTGGTAATAAACAATAGGGTGAGCC
GGCAACTCAGAACGGTGGGATATTTGTCAATGTAATCTTATAGTACGGTA
CAGAACAGCTATTGTTTACAAATAATATCATGTACCATTGCCATTTAGTA
AGATGAGTACCTATTAATACAATAGTAAGATGATCACCTATTAATATAAT
AGTAAGATGATGACCTATTAATGCAATAGTAAGATGATCACATATTAATA
CAATAGTAAGATGAGTACCTATTAATACAATTGTAAGATGATCACCTATT
AATACAATAGTAAGATGATCACCTATTAATACAATAGTAAGATGATCACC
TATTAACCCTCCCCCCTTCGCCGTCACACCCACAATCGCCGATCTATGAT
GGATCCGTTAATCGTTAAATTGATCGACCAGCTTTACGGTCCCGATCATC
CGGAAGTGGCGGCGGACATGTCCAATTTGGCGGAGGTTCTTATGGACAAA
AGTAAGGCTCATCCCGTTGCCTCTAACGCAGTGCAGTGTAGCCCAGAGCT
GCAGGGGTTTACCCGTACAGGCGGGTCGTTTTTCTGCGGAAATGTCGTGA
TTCCTGCCCAAGGGTTTAAATGAGTTCATATTTTTTTAGCATAAATATAT
GATATTTGAGGGTGCATCATCCCACCATGGGCACGCGCTCTAATGTGCCG
ATTGAGGCTGTGTGAAGTGGGTGGATATCCTTAAGTTGGAGACGTTGTGG
CGTTGTACATATGGTATGGGACGGGACGGGACGGGACGATGCAGTGTATG
TAGTGCATGGTGTCGTAAAGTTTGCTGTGGAGATTAAAAACCCCGCAATA
CCGGTACGATATAGCGGCGACAGCGATGGTGATGTTGGCGAGTTCCATGA
GTTCAATACTGGCTTCGTCCCGTTTCCACATCTTAGTTTGCACTCAAAAG
CAGTGTTTGCATATTTCCGCGCTTGCTTCTCTTCTCTTGGCTTCTTCTCT
CTATTACTGTACGGTATGTAGCATCGATCGGCAGAACGCGATACTGTAAT
AAGACAATAAAAATGACGACAGTGATCGATAAGAAGACAATGATAACAAA
CATGAACCTCTTCCTTTTCCTTGACGTGCTACTGCTACTGTTGCTTCTGC
TGCTGCGTTATGCTACTGACGGTACGTCCAGGCGACTTCGATGGCGCGGA
GCCCTTGGTTCGACGAGCGCTCGAGATACGGACCCGATTCTTGGACCCGT
TTCACGCTGATGTGGGACATAGTCGGCTGAACCTTTCCCTCATCCAACGA
AACAAGGCAAGTCGAATACTGTACTATGCTGTACTGTATATGGCGGGATG
TATACCACGGCTGCGAGAGGCTCTCGACCTTTCTTATATTTGATTATGTG
TATAGGTCGTACCAGTACATTTTTTACGAATAATAGATCGGCCCATTATT
AAAATAAAATAACCAACCGCCAACCGATACGGAGGGGAAAGCGACTACGC
CTCGCATATCAATTTTAGGCCCAAACATTAGTATTCAGTAGAGCAGATTA
GATTATGGTATAGGCTTTTATAGTGTAATACAGTATAGTATAGTATGGTA
TGGTGCGGTAACACAGTGCAACCCCAGTTGATTTTATTGATCGGCAAAAA
GGAGCTGTTGTGCGACATACCGTACGGATTCGATCCTGCTGAATATCGTA
GTCTAGTCTAGTCTAATCCATTAAGTGGAGCCGGGGACTATTAATACGAC
GATGTACAATACGGCACGGTGGGTGATCGGAGGATAAAGCACAATCTCGA
GGATGAAGATATGATGTCTTCGATCGATCTTCTCTCTATCTTGAAGGGAG
GGAGGATAGTTTGTCTTCTAAAAGTTTCACACCCTACGTAGGCAGTACAT
GGCCATTGCGCCGTCGATAAGGGGGGGTTATGATATAATCTATATGATAT
ACTATCCTGCTGTGGCGCTTCTTGCGACGTCCCGAAGGCTGAAAAACACA
AAAGGGGTCTGAGGTGGTCCTCTTTCTCACTCTCGAACCGAGGCAAACTG
AAGAAAACCGAGGCAAACCGAAATGAAAAAAACCGCTGTGGACAACGAAA
GCCGATTTAACTCTTTCCCTCTCTGAATCGACTCAAAATCTCTTGTTTCA
CGCTGTTTTTGCTTCATTACCCGTGTGCTGCACCAACTGTATCTCAAGGG
CGACAATCAAAGGGCCTGTCTGAATCAGGCTCTAGCGAACAAAATCTGGT
CAAGGGCATTCGGCGGCGGCGCAGAAGAACGAGCATCGAAGAATGATTGC
TCTCGTCGCTCCGAGGGG
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Coding sequence (CDS) from alignment at H-elongata_contig15447:1567..4284+

>mRNA_H-elongata_contig15447.3584.1 ID=mRNA_H-elongata_contig15447.3584.1|Name=mRNA_H-elongata_contig15447.3584.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=942bp|location=Sequence derived from alignment at H-elongata_contig15447:1567..4284+ (Himanthalia elongata Himel1 dioecious)
GACACAGTAGTACCTTCTGTGAGCCCGCCTTGTCCAGCGGGAGGCGCGGG
TCATGCCTTATGGACAGGCGTTGCCAAGATGCTTCGAGCGCAGGACACAG
TAGTACCTTCTGTGAGCCCGCCTTGTCCAGCGGGAGGCGCGGGTCATGCC
TTATGGACAGGCGTTGCCAAGATGCTTCGAGCGCAGAGCGACAAGCGAGA
TTGGATGGCGGAGTCCTGCCTCCGACGGTGCTTGGTAATAAACAATAGGA
GCGACAAGCGAGATTGGATGGCGGAGTCCTGCCTCCGACGGTGCTTGGTA
ATAAACAATAGGCTTTACGGTCCCGATCATCCGGAAGTGGCGGCGGACAT
GTCCAATTTGGCGGAGGTTCTTATGGACAAAACTTTACGGTCCCGATCAT
CCGGAAGTGGCGGCGGACATGTCCAATTTGGCGGAGGTTCTTATGGACAA
AAGCGACTTCGATGGCGCGGAGCCCTTGGTTCGACGAGCGCTCGAGATAC
GGACCCGATTCTTGGACCCGTTTCACGCTGATGTGGGACATAGTCGGCTG
AACCTTTCCCTCATCCAACGAAACAAGGCGACTTCGATGGCGCGGAGCCC
TTGGTTCGACGAGCGCTCGAGATACGGACCCGATTCTTGGACCCGTTTCA
CGCTGATGTGGGACATAGTCGGCTGAACCTTTCCCTCATCCAACGAAACA
AGGGCGACAATCAAAGGGCCTGTCTGAATCAGGCTCTAGCGAACAAAATC
TGGTCAAGGGCATTCGGCGGCGGCGCAGAAGAACGAGCATCGAAGAATGA
TTGCTCTCGTCGCTCCGAGGGGGGCGACAATCAAAGGGCCTGTCTGAATC
AGGCTCTAGCGAACAAAATCTGGTCAAGGGCATTCGGCGGCGGCGCAGAA
GAACGAGCATCGAAGAATGATTGCTCTCGTCGCTCCGAGGGG
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