mRNA_H-elongata_contig154432.3582.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig154432.3582.1
Unique NamemRNA_H-elongata_contig154432.3582.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig154432.3582.1 vs. uniprot
Match: A0A6H5KUS9_9PHAE (Ubiquitin-like domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KUS9_9PHAE)

HSP 1 Score: 140 bits (352), Expect = 1.910e-36
Identity = 74/101 (73.27%), Postives = 77/101 (76.24%), Query Frame = 1
Query:    1 QAKRGLDRGFKPELTLEGTGGTYFLHDAARRKVAVFKPQDEEPFALNNPRCAWEGVIKIKGVLKTSQKSETSCGLGGGTVSMRPGIEAGESYVREVAAYLL 303
            Q KRGLDRGFKPELTLEGTGGTYFL DAAR+KVAVFKPQDEEPFA NNPR A +G                  GLGGGTVSMRPGI AGESYVREVAAY+L
Sbjct:  124 QVKRGLDRGFKPELTLEGTGGTYFLQDAARQKVAVFKPQDEEPFAPNNPREAMQG------------------GLGGGTVSMRPGIGAGESYVREVAAYIL 206          
BLAST of mRNA_H-elongata_contig154432.3582.1 vs. uniprot
Match: A0A7S3Q326_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3Q326_9STRA)

HSP 1 Score: 103 bits (257), Expect = 1.250e-23
Identity = 58/101 (57.43%), Postives = 71/101 (70.30%), Query Frame = 1
Query:    1 QAKRGLDRGFKPELTLEGTGGTYFLHDAARRKVAVFKPQDEEPFALNNPRCAWEGVIKIKGVLKTSQKSETSCGLGGGTVSMRPGIEAGESYVREVAAYLL 303
            QA+RGL  G KP L L+G+GGTYFLHDA + KVAVFKP DEEP+A NNPR    G ++ +G    S  S  S G G G +SMR GI+ GE+ +RE+AAYLL
Sbjct:  164 QARRGLALGLKPALVLDGSGGTYFLHDARKVKVAVFKPADEEPYAENNPR----GYVQ-QGTCTASSISAASTG-GTGDLSMRAGIKPGEACLREMAAYLL 258          
BLAST of mRNA_H-elongata_contig154432.3582.1 vs. uniprot
Match: A0A7S3UXN5_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UXN5_HETAK)

HSP 1 Score: 98.2 bits (243), Expect = 3.140e-22
Identity = 52/101 (51.49%), Postives = 63/101 (62.38%), Query Frame = 1
Query:    1 QAKRGLDRGFKPELTLEGTGGTYFLHDAARRKVAVFKPQDEEPFALNNPRCAWEGVIKIKGVLKTSQKSETSCGLGGGTVSMRPGIEAGESYVREVAAYLL 303
            QA+R L+    PEL +EGTGGTYFL DA +R +  FKP DEEPF  NNPR    G               ++ G GG  +SMRPG+ AGE+Y+REVAAYLL
Sbjct:  122 QAQRALELNIVPELAMEGTGGTYFLKDARKRPLGAFKPGDEEPFMPNNPRGFEPG---------------SAGGAGGEALSMRPGVRAGEAYLREVAAYLL 207          
BLAST of mRNA_H-elongata_contig154432.3582.1 vs. uniprot
Match: A0A6U6DMY9_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A6U6DMY9_9STRA)

HSP 1 Score: 95.5 bits (236), Expect = 8.480e-21
Identity = 53/101 (52.48%), Postives = 68/101 (67.33%), Query Frame = 1
Query:    1 QAKRGLDRGFKPELTLEGTGGTYFLHDAARRKVAVFKPQDEEPFALNNPRCAWEGVIKIKGVLKTSQKSETSCGLGGGTVSMRPGIEAGESYVREVAAYLL 303
            Q++RG   G KP+L L+G+GGTY+LHDA + +VAVFKP DEEP+A NNPR    G I+ +GV  TS   + + G       MR GI  GE+ VREVAA+LL
Sbjct:  138 QSRRGFALGLKPDLVLDGSGGTYYLHDARKVRVAVFKPADEEPYAENNPR----GYIR-QGV--TSLSDDFAFGFDDAESGMRAGISPGEACVREVAAFLL 231          
BLAST of mRNA_H-elongata_contig154432.3582.1 vs. uniprot
Match: A0A6T8H4U6_9STRA (Hypothetical protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A6T8H4U6_9STRA)

HSP 1 Score: 92.4 bits (228), Expect = 1.020e-19
Identity = 50/101 (49.50%), Postives = 62/101 (61.39%), Query Frame = 1
Query:    1 QAKRGLDRGFKPELTLEGTGGTYFLHDAARRKVAVFKPQDEEPFALNNPRCAWEGVIKIKGVLKTSQKSETSCGLGGGTVSMRPGIEAGESYVREVAAYLL 303
            QA +G   G+KPEL LEG+GGTY LH   + +V VFKP DEEP+A NNPR    G ++     K S   E      G  +S+R GI  GE+ VREVAA+LL
Sbjct:  104 QALKGFVHGYKPELVLEGSGGTYLLHGQGKARVGVFKPADEEPYAENNPR----GYVRTT-FEKPSGSDECGTACSGENLSLRAGIVPGEACVREVAAFLL 199          
BLAST of mRNA_H-elongata_contig154432.3582.1 vs. uniprot
Match: A0A7S3KWH5_9STRA (Hypothetical protein n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3KWH5_9STRA)

HSP 1 Score: 91.3 bits (225), Expect = 2.580e-19
Identity = 51/100 (51.00%), Postives = 62/100 (62.00%), Query Frame = 1
Query:    4 AKRGLDRGFKPELTLEGTGGTYFLHDAARRKVAVFKPQDEEPFALNNPRCAWEGVIKIKGVLKTSQKSETSCGLGGGTVSMRPGIEAGESYVREVAAYLL 303
            A+RG+  G KPEL L+G+GGTYFLHD+ + KVAVFKP DEEP+A NNPR          G L  +          G  +S+R GI  GE  +REVAAYLL
Sbjct:  131 ARRGVAVGIKPELVLDGSGGTYFLHDSQKSKVAVFKPADEEPYAENNPR----------GYLPQA----------GENLSLRDGIAPGEGCIREVAAYLL 210          
BLAST of mRNA_H-elongata_contig154432.3582.1 vs. uniprot
Match: A0A6S9IYI4_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6S9IYI4_9STRA)

HSP 1 Score: 90.9 bits (224), Expect = 3.530e-19
Identity = 50/101 (49.50%), Postives = 65/101 (64.36%), Query Frame = 1
Query:    1 QAKRGLDRGFKPELTLEGTGGTYFLHDAARRKVAVFKPQDEEPFALNNPRCAWEGVIKIKGVLKTSQKSETSCGLGGGTVSMRPGIEAGESYVREVAAYLL 303
            QA+RG   G KP+L L+G+GGTYFLHDA + +VAVFKP DEEP+A+NNPR    G +  +G   T             ++S+R GI  GE  +REVAA+LL
Sbjct:  140 QARRGFALGLKPDLVLDGSGGTYFLHDARKVRVAVFKPADEEPYAVNNPR----GYVS-QGPASTDD-----------SMSLRRGISPGELCLREVAAFLL 224          
BLAST of mRNA_H-elongata_contig154432.3582.1 vs. uniprot
Match: K0TIM7_THAOC (Ubiquitin-like domain-containing protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0TIM7_THAOC)

HSP 1 Score: 90.1 bits (222), Expect = 6.640e-19
Identity = 49/101 (48.51%), Postives = 61/101 (60.40%), Query Frame = 1
Query:    1 QAKRGLDRGFKPELTLEGTGGTYFLHDAARRKVAVFKPQDEEPFALNNPRCAWEGVIKIKGVLKTSQKSETSCGLGGGTVSMRPGIEAGESYVREVAAYLL 303
            Q++RG+  GFKP L  +G+GG+YFL DA R++V VFKP DEEPFA NNPR    G +    +   S       G  G    +R GI  GE  +REVAAYLL
Sbjct:  169 QSRRGMAVGFKPLLAPDGSGGSYFLSDARRKRVGVFKPADEEPFAENNPR----GYVPHSSIGNPSNMGGGDGGNDGDAGGLRQGIRPGELCLREVAAYLL 265          
BLAST of mRNA_H-elongata_contig154432.3582.1 vs. uniprot
Match: A0A7S2H589_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2H589_9STRA)

HSP 1 Score: 88.6 bits (218), Expect = 9.260e-19
Identity = 46/102 (45.10%), Postives = 63/102 (61.76%), Query Frame = 1
Query:    1 QAKRGLDRGFKPELTLEGTGGTYFLHDAARRKVAVFKPQDEEPFALNNPRC-AWEGVIKIKGVLKTSQKSETSCGLGGGTVSMRPGIEAGESYVREVAAYLL 303
            Q+KR + +G  P L ++G GGTYF+ ++  + VA FKP+DEEPF +NNPR  AW GV        TS   E         ++MR GI  G++Y+REVAAY+L
Sbjct:  117 QSKRAMHKGLTPSLAMDGAGGTYFIPNSMGKYVACFKPRDEEPFTINNPRGQAWSGV--------TSSDQEE--------LTMRKGIRPGDAYIREVAAYIL 202          
BLAST of mRNA_H-elongata_contig154432.3582.1 vs. uniprot
Match: A0A6U5NS36_9STRA (Hypothetical protein n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A6U5NS36_9STRA)

HSP 1 Score: 89.4 bits (220), Expect = 1.220e-18
Identity = 51/101 (50.50%), Postives = 63/101 (62.38%), Query Frame = 1
Query:    1 QAKRGLDRGFKPELTLEGTGGTYFLHDAARRKVAVFKPQDEEPFALNNPRCAWEGVIKIKGVLKTSQKSETSCGLGGGTVSMRPGIEAGESYVREVAAYLL 303
            QA+RG+  G KPEL L+G+GGTYFL DA +  VAVFKP DEEP+A NNPR    G ++            TS       +S+R G+E GE  +REVAAYLL
Sbjct:  135 QARRGMALGLKPELVLDGSGGTYFLRDARKCPVAVFKPADEEPYASNNPR----GYVR----------QATS------DLSLREGVEPGELCLREVAAYLL 215          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig154432.3582.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KUS9_9PHAE1.910e-3673.27Ubiquitin-like domain-containing protein n=2 Tax=E... [more]
A0A7S3Q326_9STRA1.250e-2357.43Hypothetical protein n=1 Tax=Chaetoceros debilis T... [more]
A0A7S3UXN5_HETAK3.140e-2251.49Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A6U6DMY9_9STRA8.480e-2152.48Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]
A0A6T8H4U6_9STRA1.020e-1949.50Hypothetical protein n=1 Tax=Proboscia inermis Tax... [more]
A0A7S3KWH5_9STRA2.580e-1951.00Hypothetical protein n=1 Tax=Amphora coffeiformis ... [more]
A0A6S9IYI4_9STRA3.530e-1949.50Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
K0TIM7_THAOC6.640e-1948.51Ubiquitin-like domain-containing protein n=1 Tax=T... [more]
A0A7S2H589_9STRA9.260e-1945.10Hypothetical protein (Fragment) n=1 Tax=Dictyocha ... [more]
A0A6U5NS36_9STRA1.220e-1850.50Hypothetical protein n=1 Tax=Grammatophora oceanic... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig154432contigH-elongata_contig154432:643..1476 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score137.9
Seed ortholog evalue2.6e-30
Seed eggNOG ortholog2880.D7FS67
EggNOG free text desc.1-phosphatidylinositol 4-kinase activity
EggNOG OGsKOG2381@1,KOG2381@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size303
Cds size303
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929912.0324073-CDS-H-elongata_contig154432:642..8591622929912.0324073-CDS-H-elongata_contig154432:642..859Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig154432 643..859 +
1691679205.5930755-CDS-H-elongata_contig154432:642..8591691679205.5930755-CDS-H-elongata_contig154432:642..859Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig154432 643..859 +
1622929912.0448346-CDS-H-elongata_contig154432:1390..14761622929912.0448346-CDS-H-elongata_contig154432:1390..1476Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig154432 1391..1476 +
1691679205.6119714-CDS-H-elongata_contig154432:1390..14761691679205.6119714-CDS-H-elongata_contig154432:1390..1476Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig154432 1391..1476 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig154432.3582.1prot_H-elongata_contig154432.3582.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig154432 643..1476 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig154432.3582.1

>prot_H-elongata_contig154432.3582.1 ID=prot_H-elongata_contig154432.3582.1|Name=mRNA_H-elongata_contig154432.3582.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=101bp
QAKRGLDRGFKPELTLEGTGGTYFLHDAARRKVAVFKPQDEEPFALNNPR
CAWEGVIKIKGVLKTSQKSETSCGLGGGTVSMRPGIEAGESYVREVAAYL
L
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mRNA from alignment at H-elongata_contig154432:643..1476+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig154432.3582.1 ID=mRNA_H-elongata_contig154432.3582.1|Name=mRNA_H-elongata_contig154432.3582.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=834bp|location=Sequence derived from alignment at H-elongata_contig154432:643..1476+ (Himanthalia elongata Himel1 dioecious)
CAGGCGAAGCGCGGGCTCGACCGTGGTTTTAAGCCGGAGCTGACGCTCGA GGGCACAGGAGGCACCTACTTCCTGCATGACGCTGCTCGACGGAAAGTTG CGGTGTTTAAGCCTCAGGATGAAGAGCCTTTCGCCCTTAACAATCCGAGG TGTGCGTGGGAAGGAGTTATAAAGATAAAGGGGGTCTTGAAAACTAGTCA GAAATCGGAGACCTCGTGTAACGTCGAGCTAGACGTGTTGCTGTACGCGC AGGACGTCGCACTGGGCCGGATTTGCCAACCATAGGGTAGGGGGGAGAGG AGTTCAGTGTGAAACACGCTGCGTGCTTCAGATTGACATCGGGAATTACT GGTGCGCACGGCGTGCATCTTTAGTCCTTGTTTGGAAACCTGCTACGCTA CACGCATATGGGTGGCACTTGCTCTCCGCGCATTTCCGGTGGTAGTCGAA ATATGACGGCACACGGAACCTTTGGAGGGGAGTAGGGTTTCCCATGCGAT CCGAGCTTCGGCGAAGAAACGCCAGGTTGCTGGGGCAGGCCGACGCCTGT ATTGGTGCCCGAAACGGTCAAAATATCTTCCCGGTACAGTAGTATTAGTA TTAGTATTAGTATTAATAGCTGCTGTTCGTACGATGGCCACTCCACTTTT GTTTCTCTTTGATATGGATACCGTATGCTGTTATCTTCTTTCCCTCGGTC CGTTCATTATGAAAAACAATGCTTGTTTTGGCAGGGACGCGATGCAAGGT GGGCTGGGCGGAGGGACGGTGTCCATGAGACCTGGTATCGAGGCCGGGGA ATCGTATGTCCGAGAGGTTGCAGCCTATCTCCTG
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Coding sequence (CDS) from alignment at H-elongata_contig154432:643..1476+

>mRNA_H-elongata_contig154432.3582.1 ID=mRNA_H-elongata_contig154432.3582.1|Name=mRNA_H-elongata_contig154432.3582.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=606bp|location=Sequence derived from alignment at H-elongata_contig154432:643..1476+ (Himanthalia elongata Himel1 dioecious)
CAGGCGAAGCGCGGGCTCGACCGTGGTTTTAAGCCGGAGCTGACGCTCGA
GGGCACAGGAGGCACCTACTTCCTGCATGACGCTGCTCGACGGAAAGTTG
CGGTGTTTAAGCCTCAGGATGAAGAGCCTTTCGCCCTTAACAATCCGAGG
TGTGCGTGGGAAGGAGTTATAAAGATAAAGGGGGTCTTGAAAACTAGTCA
GAAATCGGAGACCTCGTCAGGCGAAGCGCGGGCTCGACCGTGGTTTTAAG
CCGGAGCTGACGCTCGAGGGCACAGGAGGCACCTACTTCCTGCATGACGC
TGCTCGACGGAAAGTTGCGGTGTTTAAGCCTCAGGATGAAGAGCCTTTCG
CCCTTAACAATCCGAGGTGTGCGTGGGAAGGAGTTATAAAGATAAAGGGG
GTCTTGAAAACTAGTCAGAAATCGGAGACCTCGTGTGGGCTGGGCGGAGG
GACGGTGTCCATGAGACCTGGTATCGAGGCCGGGGAATCGTATGTCCGAG
AGGTTGCAGCCTATCTCCTGGTGGGCTGGGCGGAGGGACGGTGTCCATGA
GACCTGGTATCGAGGCCGGGGAATCGTATGTCCGAGAGGTTGCAGCCTAT
CTCCTG
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