mRNA_H-elongata_contig154397.3578.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig154397.3578.1
Unique NamemRNA_H-elongata_contig154397.3578.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig154397.3578.1 vs. uniprot
Match: A0A7S1D9A9_CYCTE (Pyruvate dehydrogenase E1 component subunit beta n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1D9A9_CYCTE)

HSP 1 Score: 132 bits (331), Expect = 4.740e-36
Identity = 64/67 (95.52%), Postives = 66/67 (98.51%), Query Frame = 1 
Query:    1 QALGEGMNGYRPIVELMNTNFGIYGMAELSSAGNTYATTGGQFDMPLTIIGAGGTAPNQALGAEHSQ 201
            +ALGE MNGYRPIVELMNTNFGIYGMAE+SSAGNTYATTGGQFDMPLTIIGAGGTAPNQALGAEHSQ
Sbjct:   54 KALGEAMNGYRPIVELMNTNFGIYGMAEISSAGNTYATTGGQFDMPLTIIGAGGTAPNQALGAEHSQ 120
[Close]
BLAST of mRNA_H-elongata_contig154397.3578.1 vs. uniprot
Match: B8C5P9_THAPS (Pyruvate dehydrogenase E1 component subunit beta n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C5P9_THAPS)

HSP 1 Score: 130 bits (328), Expect = 1.170e-35
Identity = 62/67 (92.54%), Postives = 67/67 (100.00%), Query Frame = 1 
Query:    1 QALGEGMNGYRPIVELMNTNFGIYGMAELSSAGNTYATTGGQFDMPLTIIGAGGTAPNQALGAEHSQ 201
            +ALGEGMNGYRPIVELMNTNFGI+GMAELSSAGNT+ATTGGQFDMP+TI+GAGGTAPNQALGAEHSQ
Sbjct:   48 KALGEGMNGYRPIVELMNTNFGIFGMAELSSAGNTFATTGGQFDMPMTIVGAGGTAPNQALGAEHSQ 114
[Close]
BLAST of mRNA_H-elongata_contig154397.3578.1 vs. uniprot
Match: A0A7S1USZ6_9STRA (Pyruvate dehydrogenase E1 component subunit beta n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1USZ6_9STRA)

HSP 1 Score: 131 bits (330), Expect = 7.130e-35
Identity = 63/67 (94.03%), Postives = 66/67 (98.51%), Query Frame = 1 
Query:    1 QALGEGMNGYRPIVELMNTNFGIYGMAELSSAGNTYATTGGQFDMPLTIIGAGGTAPNQALGAEHSQ 201
            +ALGE MNGYRP+VELMNTNFGIYGMAELSSAGNTYATTGGQFDMP+TIIGAGGTAPNQALGAEHSQ
Sbjct:  195 KALGEAMNGYRPVVELMNTNFGIYGMAELSSAGNTYATTGGQFDMPMTIIGAGGTAPNQALGAEHSQ 261
[Close]
BLAST of mRNA_H-elongata_contig154397.3578.1 vs. uniprot
Match: A0A7S2KDP0_9STRA (Pyruvate dehydrogenase E1 component subunit beta n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2KDP0_9STRA)

HSP 1 Score: 130 bits (328), Expect = 9.410e-35
Identity = 62/67 (92.54%), Postives = 67/67 (100.00%), Query Frame = 1 
Query:    1 QALGEGMNGYRPIVELMNTNFGIYGMAELSSAGNTYATTGGQFDMPLTIIGAGGTAPNQALGAEHSQ 201
            +ALGEGMNGYRPIVELMNTNFGIYGMAE+SSAGNT+ATTGGQFDMP+TIIGAGGTAPNQ+LGAEHSQ
Sbjct:  166 KALGEGMNGYRPIVELMNTNFGIYGMAEISSAGNTFATTGGQFDMPMTIIGAGGTAPNQSLGAEHSQ 232
[Close]
BLAST of mRNA_H-elongata_contig154397.3578.1 vs. uniprot
Match: F0YJF4_AURAN (Pyruvate dehydrogenase E1 component subunit beta n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YJF4_AURAN)

HSP 1 Score: 129 bits (323), Expect = 1.050e-34
Identity = 61/67 (91.04%), Postives = 65/67 (97.01%), Query Frame = 1 
Query:    1 QALGEGMNGYRPIVELMNTNFGIYGMAELSSAGNTYATTGGQFDMPLTIIGAGGTAPNQALGAEHSQ 201
            +ALGEGMNGYRPIVELMN NFGIYGMAELSSAGNTYATTGGQF MP+T++GAGGTAPNQALGAEHSQ
Sbjct:   72 KALGEGMNGYRPIVELMNANFGIYGMAELSSAGNTYATTGGQFKMPMTVVGAGGTAPNQALGAEHSQ 138
[Close]
BLAST of mRNA_H-elongata_contig154397.3578.1 vs. uniprot
Match: D8LEK3_ECTSI (Pyruvate dehydrogenase (acetyl-transferring) n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LEK3_ECTSI)

HSP 1 Score: 133 bits (334), Expect = 1.190e-34
Identity = 64/67 (95.52%), Postives = 67/67 (100.00%), Query Frame = 1 
Query:    1 QALGEGMNGYRPIVELMNTNFGIYGMAELSSAGNTYATTGGQFDMPLTIIGAGGTAPNQALGAEHSQ 201
            +ALGEGMNGYRPIVELMNTNFGIYGMAELSSAGNTYATTGGQFDMP+TIIGAGGTAPNQ+LGAEHSQ
Sbjct:  537 KALGEGMNGYRPIVELMNTNFGIYGMAELSSAGNTYATTGGQFDMPMTIIGAGGTAPNQSLGAEHSQ 603
[Close]
BLAST of mRNA_H-elongata_contig154397.3578.1 vs. uniprot
Match: A0A7S2M045_9STRA (Hypothetical protein (Fragment) n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2M045_9STRA)

HSP 1 Score: 131 bits (330), Expect = 1.310e-34
Identity = 62/67 (92.54%), Postives = 67/67 (100.00%), Query Frame = 1 
Query:    1 QALGEGMNGYRPIVELMNTNFGIYGMAELSSAGNTYATTGGQFDMPLTIIGAGGTAPNQALGAEHSQ 201
            +ALGEGMNGYRPIVELMNTNFGI+GMAE+SSAGNTYATTGGQFDMP+TI+GAGGTAPNQALGAEHSQ
Sbjct:  427 KALGEGMNGYRPIVELMNTNFGIFGMAEISSAGNTYATTGGQFDMPMTIVGAGGTAPNQALGAEHSQ 493
[Close]
BLAST of mRNA_H-elongata_contig154397.3578.1 vs. uniprot
Match: A0A7S4UV86_9STRA (Pyruvate dehydrogenase (acetyl-transferring) n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4UV86_9STRA)

HSP 1 Score: 132 bits (333), Expect = 1.640e-34
Identity = 64/67 (95.52%), Postives = 67/67 (100.00%), Query Frame = 1 
Query:    1 QALGEGMNGYRPIVELMNTNFGIYGMAELSSAGNTYATTGGQFDMPLTIIGAGGTAPNQALGAEHSQ 201
            +ALGEGMNGYRPIVELMNTNFGIYGMAELSSAGNT+ATTGGQFDMP+TIIGAGGTAPNQALGAEHSQ
Sbjct:  547 KALGEGMNGYRPIVELMNTNFGIYGMAELSSAGNTFATTGGQFDMPMTIIGAGGTAPNQALGAEHSQ 613
[Close]
BLAST of mRNA_H-elongata_contig154397.3578.1 vs. uniprot
Match: A0A7R9UYB8_DIALT (Pyruvate dehydrogenase E1 component subunit beta (Fragment) n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A7R9UYB8_DIALT)

HSP 1 Score: 129 bits (323), Expect = 1.650e-34
Identity = 61/67 (91.04%), Postives = 66/67 (98.51%), Query Frame = 1 
Query:    1 QALGEGMNGYRPIVELMNTNFGIYGMAELSSAGNTYATTGGQFDMPLTIIGAGGTAPNQALGAEHSQ 201
            +ALGEG+NGYRPIVELMN+NFGIYGMAELSSAGNTYATTGGQF MP+T+IGAGGTAPNQALGAEHSQ
Sbjct:  273 KALGEGLNGYRPIVELMNSNFGIYGMAELSSAGNTYATTGGQFQMPMTVIGAGGTAPNQALGAEHSQ 339
[Close]
BLAST of mRNA_H-elongata_contig154397.3578.1 vs. uniprot
Match: A0A7S2U5Q1_9STRA (Pyruvate dehydrogenase (acetyl-transferring) n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2U5Q1_9STRA)

HSP 1 Score: 132 bits (331), Expect = 3.090e-34
Identity = 64/67 (95.52%), Postives = 66/67 (98.51%), Query Frame = 1 
Query:    1 QALGEGMNGYRPIVELMNTNFGIYGMAELSSAGNTYATTGGQFDMPLTIIGAGGTAPNQALGAEHSQ 201
            +ALGE MNGYRPIVELMNTNFGIYGMAELSSAGNTYATTGGQFDMP+TIIGAGGTAPNQALGAEHSQ
Sbjct:  577 KALGEAMNGYRPIVELMNTNFGIYGMAELSSAGNTYATTGGQFDMPMTIIGAGGTAPNQALGAEHSQ 643
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig154397.3578.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S1D9A9_CYCTE4.740e-3695.52Pyruvate dehydrogenase E1 component subunit beta n... [more]
B8C5P9_THAPS1.170e-3592.54Pyruvate dehydrogenase E1 component subunit beta n... [more]
A0A7S1USZ6_9STRA7.130e-3594.03Pyruvate dehydrogenase E1 component subunit beta n... [more]
A0A7S2KDP0_9STRA9.410e-3592.54Pyruvate dehydrogenase E1 component subunit beta n... [more]
F0YJF4_AURAN1.050e-3491.04Pyruvate dehydrogenase E1 component subunit beta n... [more]
D8LEK3_ECTSI1.190e-3495.52Pyruvate dehydrogenase (acetyl-transferring) n=2 T... [more]
A0A7S2M045_9STRA1.310e-3492.54Hypothetical protein (Fragment) n=1 Tax=Skeletonem... [more]
A0A7S4UV86_9STRA1.640e-3495.52Pyruvate dehydrogenase (acetyl-transferring) n=2 T... [more]
A0A7R9UYB8_DIALT1.650e-3491.04Pyruvate dehydrogenase E1 component subunit beta (... [more]
A0A7S2U5Q1_9STRA3.090e-3495.52Pyruvate dehydrogenase (acetyl-transferring) n=1 T... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig154397contigH-elongata_contig154397:588..788 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score125.9
Seed ortholog evalue6.3e-27
Seed eggNOG ortholog2880.D8LEK3
Preferred nameodpA
KEGG rclassRC00004,RC00027,RC00627,RC02742,RC02744,RC02882
KEGG koko:K00161
KEGG ReactionR00014,R00209,R01699,R03270
KEGG Pathwayko00010,ko00020,ko00620,ko01100,ko01110,ko01120,ko01130,ko01200,ko04066,ko04922,ko05230,map00010,map00020,map00620,map01100,map01110,map01120,map01130,map01200,map04066,map04922,map05230
KEGG ModuleM00307
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0009507,GO:0009526,GO:0009532,GO:0009536,GO:0009570,GO:0009941,GO:0031967,GO:0031975,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464
EggNOG free text desc.pyruvate dehydrogenase (acetyl-transferring) activity
EggNOG OGsCOG0022@1,COG0462@1,KOG0225@2759,KOG0524@2759
EC1.2.4.1
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01601,ko00000,ko00001,ko00002,ko01000
Hectar predicted targeting categoryother localisation
Exons1
Model size201
Cds size183
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929911.6739204-CDS-H-elongata_contig154397:587..7701622929911.6739204-CDS-H-elongata_contig154397:587..770Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig154397 588..770 -
1691679205.4853086-CDS-H-elongata_contig154397:587..7701691679205.4853086-CDS-H-elongata_contig154397:587..770Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig154397 588..770 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929911.685801-UTR-H-elongata_contig154397:770..7881622929911.685801-UTR-H-elongata_contig154397:770..788Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig154397 771..788 -
1691679205.4947925-UTR-H-elongata_contig154397:770..7881691679205.4947925-UTR-H-elongata_contig154397:770..788Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig154397 771..788 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig154397.3578.1prot_H-elongata_contig154397.3578.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig154397 588..770 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig154397.3578.1

>prot_H-elongata_contig154397.3578.1 ID=prot_H-elongata_contig154397.3578.1|Name=mRNA_H-elongata_contig154397.3578.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=61bp
MNGYRPIVELMNTNFGIYGMAELSSAGNTYATTGGQFDMPLTIIGAGGTA
PNQALGAEHSQ
back to top

mRNA from alignment at H-elongata_contig154397:588..788-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig154397.3578.1 ID=mRNA_H-elongata_contig154397.3578.1|Name=mRNA_H-elongata_contig154397.3578.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=201bp|location=Sequence derived from alignment at H-elongata_contig154397:588..788- (Himanthalia elongata Himel1 dioecious)
CAGGCCTTGGGCGAAGGCATGAACGGCTACAGGCCGATCGTGGAGCTCAT
GAACACAAACTTTGGAATCTACGGCATGGCCGAGCTCAGCAGTGCGGGGA
ACACCTACGCCACCACCGGCGGACAGTTCGACATGCCCCTGACCATCATC
GGGGCCGGGGGCACCGCTCCCAACCAGGCCCTCGGGGCGGAGCACTCTCA
G
back to top

Coding sequence (CDS) from alignment at H-elongata_contig154397:588..788-

>mRNA_H-elongata_contig154397.3578.1 ID=mRNA_H-elongata_contig154397.3578.1|Name=mRNA_H-elongata_contig154397.3578.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=366bp|location=Sequence derived from alignment at H-elongata_contig154397:588..788- (Himanthalia elongata Himel1 dioecious)
ATGAACGGCTACAGGCCGATCGTGGAGCTCATGAACACAAACTTTGGAAT
CTACGGCATGGCCGAGCTCAGCAGTGCGGGGAACACCTACGCCACCACCG
GCGGACAGTTCGACATGCCCCTGACCATCATCGGGGCCGGGGGCACCGCT
CCCAACCAGGCCCTCGGGGCGGAGCACTCTCAGATGAACGGCTACAGGCC
GATCGTGGAGCTCATGAACACAAACTTTGGAATCTACGGCATGGCCGAGC
TCAGCAGTGCGGGGAACACCTACGCCACCACCGGCGGACAGTTCGACATG
CCCCTGACCATCATCGGGGCCGGGGGCACCGCTCCCAACCAGGCCCTCGG
GGCGGAGCACTCTCAG
back to top