mRNA_H-elongata_contig154313.3576.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig154313.3576.1
Unique NamemRNA_H-elongata_contig154313.3576.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig154313.3576.1 vs. uniprot
Match: A0A2T2MZL1_CORCC (Ankyrin (Fragment) n=1 Tax=Corynespora cassiicola Philippines TaxID=1448308 RepID=A0A2T2MZL1_CORCC)

HSP 1 Score: 52.0 bits (123), Expect = 6.670e-6
Identity = 20/31 (64.52%), Postives = 29/31 (93.55%), Query Frame = 1 
Query:   82 TPLHFAAWGGNKRVVRLLLDYGADVEARDTE 174
            TPLH+AAWGG++ VVRLL+D+GA+++A+ TE
Sbjct:   10 TPLHWAAWGGHETVVRLLIDHGANIDAKSTE 40
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BLAST of mRNA_H-elongata_contig154313.3576.1 vs. uniprot
Match: UPI001C0E1BC4 (ankyrin repeat domain-containing protein n=1 Tax=Polynucleobacter sp. AP-Mumm-500A-B3 TaxID=2081043 RepID=UPI001C0E1BC4)

HSP 1 Score: 52.8 bits (125), Expect = 5.530e-5
Identity = 28/56 (50.00%), Postives = 38/56 (67.86%), Query Frame = 1 
Query:   10 GHADVAGAVILAGANVCSRGGGNSTPLHFAAWGGNKRVVRLLLDYGADVEARDTEG 177
            GH DVA  +I  GA V S   GN+TPL  A   GN+++V+LLLD GAD++ R++ G
Sbjct:  138 GHLDVAQFLIANGATVDSLSLGNTTPLMMAVQSGNEQLVKLLLDKGADLQIRNSNG 193
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BLAST of mRNA_H-elongata_contig154313.3576.1 vs. uniprot
Match: UPI001BFDA9BE (ankyrin repeat domain-containing protein n=1 Tax=Polynucleobacter sp. MWH-Aus1W21 TaxID=1855880 RepID=UPI001BFDA9BE)

HSP 1 Score: 52.8 bits (125), Expect = 5.610e-5
Identity = 27/58 (46.55%), Postives = 40/58 (68.97%), Query Frame = 1 
Query:   10 GHADVAGAVILAGANVCSRGGGNSTPLHFAAWGGNKRVVRLLLDYGADVEARDTEGNS 183
            GH D+A  +I  GA++ S   GN+TPL  A   GN+ +V+LLLD GAD++ R+++G S
Sbjct:  138 GHLDIAQFLIANGASIDSLSQGNTTPLMMAVQSGNEVLVKLLLDKGADLQLRNSQGLS 195
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig154313.3576.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A2T2MZL1_CORCC6.670e-664.52Ankyrin (Fragment) n=1 Tax=Corynespora cassiicola ... [more]
UPI001C0E1BC45.530e-550.00ankyrin repeat domain-containing protein n=1 Tax=P... [more]
UPI001BFDA9BE5.610e-546.55ankyrin repeat domain-containing protein n=1 Tax=P... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig154313contigH-elongata_contig154313:3..667 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size586
Cds size369
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig154313.3576.1prot_H-elongata_contig154313.3576.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig154313 3..450 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929911.370228-CDS-H-elongata_contig154313:2..3261622929911.370228-CDS-H-elongata_contig154313:2..326Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig154313 3..326 +
1691679205.368358-CDS-H-elongata_contig154313:2..3261691679205.368358-CDS-H-elongata_contig154313:2..326Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig154313 3..326 +
1622929911.3861763-CDS-H-elongata_contig154313:405..4501622929911.3861763-CDS-H-elongata_contig154313:405..450Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig154313 406..450 +
1691679205.3762658-CDS-H-elongata_contig154313:405..4501691679205.3762658-CDS-H-elongata_contig154313:405..450Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig154313 406..450 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929911.4028227-UTR-H-elongata_contig154313:450..6671622929911.4028227-UTR-H-elongata_contig154313:450..667Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig154313 451..667 +
1691679205.3843353-UTR-H-elongata_contig154313:450..6671691679205.3843353-UTR-H-elongata_contig154313:450..667Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig154313 451..667 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig154313.3576.1

>prot_H-elongata_contig154313.3576.1 ID=prot_H-elongata_contig154313.3576.1|Name=mRNA_H-elongata_contig154313.3576.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=123bp
AFYGHADVAGAVILAGANVCSRGGGNSTPLHFAAWGGNKRVVRLLLDYGA
DVEARDTEGNSPQVRQGGDVNDLCCHLSLPARCYLCILCCLDILLRGWGV
GGVIGSGRGKIISPCPRSRLRI*
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mRNA from alignment at H-elongata_contig154313:3..667+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig154313.3576.1 ID=mRNA_H-elongata_contig154313.3576.1|Name=mRNA_H-elongata_contig154313.3576.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=665bp|location=Sequence derived from alignment at H-elongata_contig154313:3..667+ (Himanthalia elongata Himel1 dioecious)
GCCTTCTATGGACACGCTGACGTGGCGGGTGCGGTCATTCTAGCCGGAGC
CAACGTGTGCTCGAGGGGTGGGGGAAACTCGACCCCGTTGCACTTCGCCG
CGTGGGGCGGCAACAAGCGTGTTGTTCGTCTTCTGCTGGACTATGGGGCG
GACGTTGAGGCTCGAGACACAGAGGGCAACTCCCCCCAGGTGAGGCAAGG
CGGGGATGTCAACGACTTGTGCTGTCATCTGTCATTACCTGCGAGGTGCT
ATCTATGCATACTTTGTTGTCTTGATATCCTGCTGCGCGGGTGGGGCGTA
GGTGGTGTGATCGGATCCGGCAGGGTGGTGGTTGTTGTTAGTCTCACATT
CAGCTAAAGATCAAACGCATTTGGTTGCCTTCTGCTCGGGGTCAGCTAAA
CAGGGAAAAATAATTTCCCCCTGTCCCCGTTCGCGCCTGAGAATTTAGTC
TCTCGAGACTGGTTCATCGACAGTCCCGTCCCGATGTGTATCGTACCGTA
GATATTTTCTAGAGAACTCCTGTTTGGGAAGGGGAGAGGGCGGACTTTTA
AGAGAAAATATATGATAAATGCCTTTTTGAGTTTTCCCTTAATAAACACA
TGAATTCATTCCAACCCTCCGAACATCCATGCCTTCTTAGCACCGTGAGA
GGTGCAGTCTATGGG
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Coding sequence (CDS) from alignment at H-elongata_contig154313:3..667+

>mRNA_H-elongata_contig154313.3576.1 ID=mRNA_H-elongata_contig154313.3576.1|Name=mRNA_H-elongata_contig154313.3576.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=738bp|location=Sequence derived from alignment at H-elongata_contig154313:3..667+ (Himanthalia elongata Himel1 dioecious)
GCCTTCTATGGACACGCTGACGTGGCGGGTGCGGTCATTCTAGCCGGAGC
CAACGTGTGCTCGAGGGGTGGGGGAAACTCGACCCCGTTGCACTTCGCCG
CGTGGGGCGGCAACAAGCGTGTTGTTCGTCTTCTGCTGGACTATGGGGCG
GACGTTGAGGCTCGAGACACAGAGGGCAACTCCCCCCAGGTGAGGCAAGG
CGGGGATGTCAACGACTTGTGCTGTCATCTGTCATTACCTGCGAGGTGCT
ATCTATGCATACTTTGTTGTCTTGATATCCTGCTGCGCGGGTGGGGCGTA
GGTGGTGTGATCGGATCCGGCAGGGCCTTCTATGGACACGCTGACGTGGC
GGGTGCGGTCATTCTAGCCGGAGCCAACGTGTGCTCGAGGGGTGGGGGAA
ACTCGACCCCGTTGCACTTCGCCGCGTGGGGCGGCAACAAGCGTGTTGTT
CGTCTTCTGCTGGACTATGGGGCGGACGTTGAGGCTCGAGACACAGAGGG
CAACTCCCCCCAGGTGAGGCAAGGCGGGGATGTCAACGACTTGTGCTGTC
ATCTGTCATTACCTGCGAGGTGCTATCTATGCATACTTTGTTGTCTTGAT
ATCCTGCTGCGCGGGTGGGGCGTAGGTGGTGTGATCGGATCCGGCAGGGG
AAAAATAATTTCCCCCTGTCCCCGTTCGCGCCTGAGAATTTAGGGAAAAA
TAATTTCCCCCTGTCCCCGTTCGCGCCTGAGAATTTAG
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