mRNA_H-elongata_contig154311.3575.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig154311.3575.1
Unique NamemRNA_H-elongata_contig154311.3575.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig154311.3575.1 vs. uniprot
Match: D7FSD7_ECTSI (Nicastrin n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSD7_ECTSI)

HSP 1 Score: 102 bits (255), Expect = 3.910e-24
Identity = 46/58 (79.31%), Postives = 51/58 (87.93%), Query Frame = 1 
Query:    1 QTCLGWTDIDGKRSPQCLPLGGQSSWASIGPPGLPERETVLAVAGMDSTSLFHDRAPG 174
            Q CLGWTDI+G RSPQC PLGGQSSWAS+G  GL  R+TVLAV+GMDSTS+FHDRAPG
Sbjct:  306 QECLGWTDINGDRSPQCKPLGGQSSWASVGGAGLGGRQTVLAVSGMDSTSMFHDRAPG 363
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BLAST of mRNA_H-elongata_contig154311.3575.1 vs. uniprot
Match: A0A7S4DDP0_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DDP0_HETAK)

HSP 1 Score: 80.9 bits (198), Expect = 1.970e-16
Identity = 36/56 (64.29%), Postives = 41/56 (73.21%), Query Frame = 1 
Query:    7 CLGWTDIDGKRSPQCLPLGGQSSWASIGPPGLPERETVLAVAGMDSTSLFHDRAPG 174
            CL W D+DG+R PQCLPLGGQS W ++GP     R  VLAVAGMDS + FHDRA G
Sbjct:    1 CLAWEDVDGRRDPQCLPLGGQSVWGTLGPRDA-GRPAVLAVAGMDSAAFFHDRADG 55
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BLAST of mRNA_H-elongata_contig154311.3575.1 vs. uniprot
Match: A0A7S2V4V2_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V4V2_9STRA)

HSP 1 Score: 73.2 bits (178), Expect = 1.030e-13
Identity = 31/55 (56.36%), Postives = 38/55 (69.09%), Query Frame = 1 
Query:    7 CLGWTDIDGKRSPQCLPLGGQSSWASIGPPGLPERETVLAVAGMDSTSLFHDRAP 171
            CL W DIDG+R PQCLPLGG S+WAS+  P  P +  V   A +DS +LFHD+ P
Sbjct:   19 CLAWQDIDGERDPQCLPLGGLSTWASLPGPPDPVKPKVFLTAAIDSATLFHDQVP 73
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BLAST of mRNA_H-elongata_contig154311.3575.1 vs. uniprot
Match: H3GV47_PHYRM (Nicastrin n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GV47_PHYRM)

HSP 1 Score: 68.9 bits (167), Expect = 3.190e-12
Identity = 34/56 (60.71%), Postives = 41/56 (73.21%), Query Frame = 1 
Query:    7 CLGWTDIDGKRSPQCLPLGGQSSWASIGPPGLPERETVLAVAGMDSTSLFHDRAPG 174
            CL +T+I GKRSP+C P+GGQSSWA  G   L   E V+A+AGMD+TSL H  APG
Sbjct:  210 CLNFTNIYGKRSPKCDPIGGQSSWAMRG--NLESEEIVMAMAGMDATSLSHVLAPG 263
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BLAST of mRNA_H-elongata_contig154311.3575.1 vs. uniprot
Match: A0A6A3S396_9STRA (Nicastrin n=3 Tax=Phytophthora TaxID=4783 RepID=A0A6A3S396_9STRA)

HSP 1 Score: 67.8 bits (164), Expect = 8.140e-12
Identity = 33/56 (58.93%), Postives = 41/56 (73.21%), Query Frame = 1 
Query:    7 CLGWTDIDGKRSPQCLPLGGQSSWASIGPPGLPERETVLAVAGMDSTSLFHDRAPG 174
            CL +T+I G RSP+C P+GGQSSWA  G   L  +E V+AVAGMD+TS+ H  APG
Sbjct:  212 CLNFTNIYGHRSPKCDPIGGQSSWAMRG--NLKSKEIVMAVAGMDATSISHVLAPG 265
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BLAST of mRNA_H-elongata_contig154311.3575.1 vs. uniprot
Match: K0TI67_THAOC (Nicastrin n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0TI67_THAOC)

HSP 1 Score: 66.2 bits (160), Expect = 2.850e-11
Identity = 32/64 (50.00%), Postives = 39/64 (60.94%), Query Frame = 1 
Query:    1 QTCLGWTDIDGKRSPQCLPLGGQSSWASIGPP---GLPE---RETVLAVAGMDSTSLFHDRAPG 174
            Q CL W D DGK SP+C PLGG S WA+ G P   G  E   + T+L    +DSTS+FH  +PG
Sbjct:  245 QKCLEWKDTDGKSSPKCAPLGGNSVWATAGTPLSAGYQEGDDKPTILVATSIDSTSMFHTVSPG 308
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BLAST of mRNA_H-elongata_contig154311.3575.1 vs. uniprot
Match: G4ZR63_PHYSP (Nicastrin n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G4ZR63_PHYSP)

HSP 1 Score: 65.1 bits (157), Expect = 7.260e-11
Identity = 32/56 (57.14%), Postives = 40/56 (71.43%), Query Frame = 1 
Query:    7 CLGWTDIDGKRSPQCLPLGGQSSWASIGPPGLPERETVLAVAGMDSTSLFHDRAPG 174
            CL +T+I G RSP+C P+GGQSSWA  G   L   E V+A+AGMD+TS+ H  APG
Sbjct:  212 CLNFTNIYGNRSPKCDPIGGQSSWAMRG--NLKSGEIVMAMAGMDATSVSHVLAPG 265
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BLAST of mRNA_H-elongata_contig154311.3575.1 vs. uniprot
Match: M4BVK0_HYAAE (Nicastrin n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4BVK0_HYAAE)

HSP 1 Score: 63.2 bits (152), Expect = 3.460e-10
Identity = 32/56 (57.14%), Postives = 39/56 (69.64%), Query Frame = 1 
Query:    7 CLGWTDIDGKRSPQCLPLGGQSSWASIGPPGLPERETVLAVAGMDSTSLFHDRAPG 174
            CL + +I G RSP+C P+GGQSSWA  G   L   E V+A+AGMD+TSL H  APG
Sbjct:  217 CLEFVNIYGHRSPRCDPIGGQSSWAMRG--NLKSDEIVMAMAGMDATSLSHVLAPG 270
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BLAST of mRNA_H-elongata_contig154311.3575.1 vs. uniprot
Match: A0A3M6VQN6_9STRA (Nicastrin n=1 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VQN6_9STRA)

HSP 1 Score: 61.2 bits (147), Expect = 1.650e-9
Identity = 30/56 (53.57%), Postives = 39/56 (69.64%), Query Frame = 1 
Query:    7 CLGWTDIDGKRSPQCLPLGGQSSWASIGPPGLPERETVLAVAGMDSTSLFHDRAPG 174
            CL + +I G RSP+C P+GGQS+WA  G   L  +E V+A+AGMD+TSL H  A G
Sbjct:  217 CLKFVNIHGDRSPKCDPIGGQSAWAMRG--NLKSKEIVMAMAGMDTTSLSHVLASG 270
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BLAST of mRNA_H-elongata_contig154311.3575.1 vs. uniprot
Match: A0A835YYT6_9STRA (Nicastrin n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YYT6_9STRA)

HSP 1 Score: 60.1 bits (144), Expect = 4.160e-9
Identity = 30/62 (48.39%), Postives = 34/62 (54.84%), Query Frame = 1 
Query:    7 CLGWTDIDGKRSPQCLPLGGQSSWASIGPP-----GLPE--RETVLAVAGMDSTSLFHDRAP 171
            CL W D DG R PQCLP+GGQSSW  +  P       P   +  VL  A MDS S FH+  P
Sbjct:  162 CLQWVDKDGARDPQCLPMGGQSSWGVLDGPYSSSDSAPSGGKPVVLLSAAMDSVSFFHNTVP 223
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig154311.3575.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 11
Match NameE-valueIdentityDescription
D7FSD7_ECTSI3.910e-2479.31Nicastrin n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
A0A7S4DDP0_HETAK1.970e-1664.29Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S2V4V2_9STRA1.030e-1356.36Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
H3GV47_PHYRM3.190e-1260.71Nicastrin n=1 Tax=Phytophthora ramorum TaxID=16432... [more]
A0A6A3S396_9STRA8.140e-1258.93Nicastrin n=3 Tax=Phytophthora TaxID=4783 RepID=A0... [more]
K0TI67_THAOC2.850e-1150.00Nicastrin n=1 Tax=Thalassiosira oceanica TaxID=159... [more]
G4ZR63_PHYSP7.260e-1157.14Nicastrin n=1 Tax=Phytophthora sojae (strain P6497... [more]
M4BVK0_HYAAE3.460e-1057.14Nicastrin n=1 Tax=Hyaloperonospora arabidopsidis (... [more]
A0A3M6VQN6_9STRA1.650e-953.57Nicastrin n=1 Tax=Peronospora effusa TaxID=542832 ... [more]
A0A835YYT6_9STRA4.160e-948.39Nicastrin n=1 Tax=Tribonema minus TaxID=303371 Rep... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig154311contigH-elongata_contig154311:149..322 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score103.6
Seed ortholog evalue3.2e-20
Seed eggNOG ortholog2880.D7FSD7
Preferred nameNCSTN
KEGG koko:K06171
KEGG Pathwayko04330,ko05010,map04330,map05010
KEGG ModuleM00682
GOsGO:0000003,GO:0000323,GO:0000902,GO:0000904,GO:0001654,GO:0001745,GO:0001751,GO:0001754,GO:0001775,GO:0002252,GO:0002262,GO:0002263,GO:0002274,GO:0002275,GO:0002283,GO:0002366,GO:0002376,GO:0002443,GO:0002444,GO:0002446,GO:0003006,GO:0003674,GO:0003824,GO:0004175,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005764,GO:0005765,GO:0005766,GO:0005768,GO:0005770,GO:0005773,GO:0005774,GO:0005783,GO:0005794,GO:0005886,GO:0005887,GO:0006508,GO:0006509,GO:0006518,GO:0006807,GO:0006810,GO:0006887,GO:0006897,GO:0006909,GO:0006955,GO:0006996,GO:0007010,GO:0007154,GO:0007165,GO:0007166,GO:0007219,GO:0007220,GO:0007267,GO:0007275,GO:0007389,GO:0007399,GO:0007423,GO:0007610,GO:0008150,GO:0008152,GO:0008233,GO:0008283,GO:0008594,GO:0009653,GO:0009790,GO:0009887,GO:0009987,GO:0010467,GO:0012505,GO:0012506,GO:0016020,GO:0016021,GO:0016043,GO:0016192,GO:0016485,GO:0016787,GO:0018991,GO:0019098,GO:0019538,GO:0022008,GO:0022414,GO:0022603,GO:0023052,GO:0030141,GO:0030154,GO:0030182,GO:0030587,GO:0030659,GO:0030667,GO:0031090,GO:0031154,GO:0031224,GO:0031226,GO:0031293,GO:0031410,GO:0031982,GO:0032501,GO:0032502,GO:0032504,GO:0032940,GO:0032943,GO:0032989,GO:0032991,GO:0033619,GO:0034205,GO:0034641,GO:0035295,GO:0035333,GO:0035577,GO:0036230,GO:0042051,GO:0042098,GO:0042110,GO:0042119,GO:0042461,GO:0042462,GO:0042478,GO:0042582,GO:0042592,GO:0042982,GO:0042987,GO:0043085,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043299,GO:0043312,GO:0043603,GO:0044093,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044425,GO:0044433,GO:0044437,GO:0044444,GO:0044446,GO:0044459,GO:0044464,GO:0044671,GO:0045055,GO:0045165,GO:0045168,GO:0045314,GO:0045321,GO:0045463,GO:0045465,GO:0045595,GO:0045664,GO:0046331,GO:0046530,GO:0046532,GO:0046649,GO:0046651,GO:0046903,GO:0048468,GO:0048513,GO:0048565,GO:0048592,GO:0048598,GO:0048609,GO:0048666,GO:0048667,GO:0048699,GO:0048731,GO:0048749,GO:0048837,GO:0048856,GO:0048869,GO:0048872,GO:0050435,GO:0050673,GO:0050767,GO:0050789,GO:0050790,GO:0050793,GO:0050794,GO:0050896,GO:0051179,GO:0051234,GO:0051239,GO:0051604,GO:0051703,GO:0051704,GO:0051716,GO:0051960,GO:0055037,GO:0055123,GO:0060284,GO:0060465,GO:0060581,GO:0065007,GO:0065008,GO:0065009,GO:0070011,GO:0070661,GO:0070765,GO:0071704,GO:0071840,GO:0071944,GO:0090596,GO:0090702,GO:0097708,GO:0098588,GO:0098657,GO:0098796,GO:0098797,GO:0098805,GO:0098852,GO:0099120,GO:0099503,GO:0140096,GO:1901564,GO:2000026,GO:2000027
EggNOG free text desc.Notch signaling pathway
EggNOG OGsKOG2657@1,KOG2657@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size174
Cds size174
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929911.3207848-CDS-H-elongata_contig154311:148..3221622929911.3207848-CDS-H-elongata_contig154311:148..322Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig154311 149..322 +
1691679205.3555512-CDS-H-elongata_contig154311:148..3221691679205.3555512-CDS-H-elongata_contig154311:148..322Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig154311 149..322 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig154311.3575.1prot_H-elongata_contig154311.3575.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig154311 149..322 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig154311.3575.1

>prot_H-elongata_contig154311.3575.1 ID=prot_H-elongata_contig154311.3575.1|Name=mRNA_H-elongata_contig154311.3575.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=58bp
QTCLGWTDIDGKRSPQCLPLGGQSSWASIGPPGLPERETVLAVAGMDSTS
LFHDRAPG
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mRNA from alignment at H-elongata_contig154311:149..322+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig154311.3575.1 ID=mRNA_H-elongata_contig154311.3575.1|Name=mRNA_H-elongata_contig154311.3575.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=174bp|location=Sequence derived from alignment at H-elongata_contig154311:149..322+ (Himanthalia elongata Himel1 dioecious)
CAGACGTGCCTGGGTTGGACCGACATCGACGGGAAGAGATCGCCCCAGTG
CCTGCCCCTTGGTGGACAGAGCTCGTGGGCTTCGATTGGCCCGCCGGGGC
TGCCGGAGAGGGAGACCGTGCTCGCCGTCGCGGGGATGGACTCGACCTCC
CTGTTTCACGACCGCGCGCCCGGT
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Coding sequence (CDS) from alignment at H-elongata_contig154311:149..322+

>mRNA_H-elongata_contig154311.3575.1 ID=mRNA_H-elongata_contig154311.3575.1|Name=mRNA_H-elongata_contig154311.3575.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=348bp|location=Sequence derived from alignment at H-elongata_contig154311:149..322+ (Himanthalia elongata Himel1 dioecious)
CAGACGTGCCTGGGTTGGACCGACATCGACGGGAAGAGATCGCCCCAGTG
CCTGCCCCTTGGTGGACAGAGCTCGTGGGCTTCGATTGGCCCGCCGGGGC
TGCCGGAGAGGGAGACCGTGCTCGCCGTCGCGGGGATGGACTCGACCTCC
CTGTTTCACGACCGCGCGCCCGGTCAGACGTGCCTGGGTTGGACCGACAT
CGACGGGAAGAGATCGCCCCAGTGCCTGCCCCTTGGTGGACAGAGCTCGT
GGGCTTCGATTGGCCCGCCGGGGCTGCCGGAGAGGGAGACCGTGCTCGCC
GTCGCGGGGATGGACTCGACCTCCCTGTTTCACGACCGCGCGCCCGGT
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