mRNA_H-elongata_contig15429.3574.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig15429.3574.1
Unique NamemRNA_H-elongata_contig15429.3574.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig15429.3574.1 vs. uniprot
Match: D7FRX5_ECTSI (Geranylgeranyl diphosphate reductase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FRX5_ECTSI)

HSP 1 Score: 131 bits (330), Expect = 3.500e-34
Identity = 60/81 (74.07%), Postives = 72/81 (88.89%), Query Frame = 1
Query:   28 SSPDTTGMEMKHRIAVVGGGPSGSCAAEILAECEDVEVTLFERKMDNAKPCGGAIPLCMIAEFDLPANIVDRKVCAVGTIS 270
            +S   +GM+MK+++AVVGGGPSGSCAAEILA+C+DV+VTLFERKMDNAKPCGGAIPLCMI EFDLP +I+DRKV  +  IS
Sbjct:   42 TSSSPSGMKMKYKVAVVGGGPSGSCAAEILADCDDVDVTLFERKMDNAKPCGGAIPLCMIDEFDLPTSIIDRKVRKMKMIS 122          
BLAST of mRNA_H-elongata_contig15429.3574.1 vs. uniprot
Match: K0T1J9_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0T1J9_THAOC)

HSP 1 Score: 116 bits (290), Expect = 5.220e-31
Identity = 51/95 (53.68%), Postives = 69/95 (72.63%), Query Frame = 1
Query:    1 FLFSFILHPSSPDTTGMEMKHRIAVVGGGPSGSCAAEILAECEDVEVTLFERKMDNAKPCGGAIPLCMIAEFDLPANIVDRKVCAVGTISYQVQC 285
            F+   + H  +  ++ + MK+++AVVGGGPSG+CAAEI A+ ++++  LFERKMDNAKPCGGAIPLCMI EFD+P   VDRKV    ++S    C
Sbjct:   19 FMGQNVAHAPATSSSALSMKYKVAVVGGGPSGACAAEIFAQEKNIDTVLFERKMDNAKPCGGAIPLCMIGEFDIPETTVDRKVSTSPSVSESRWC 113          
BLAST of mRNA_H-elongata_contig15429.3574.1 vs. uniprot
Match: A0A7S2R5C4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2R5C4_9STRA)

HSP 1 Score: 115 bits (288), Expect = 4.900e-30
Identity = 50/76 (65.79%), Postives = 63/76 (82.89%), Query Frame = 1
Query:   43 TGMEMKHRIAVVGGGPSGSCAAEILAECEDVEVTLFERKMDNAKPCGGAIPLCMIAEFDLPANIVDRKVCAVGTIS 270
            T ++MK+++AVVGGGPSG+CAAE+ A+ E ++  LFERKMDNAKPCGGAIPLCM+ EF LP NI+DRKV  +  IS
Sbjct:   39 TSLDMKYKVAVVGGGPSGACAAEVFAQEEGIDTVLFERKMDNAKPCGGAIPLCMVGEFGLPENIIDRKVRRMNLIS 114          
BLAST of mRNA_H-elongata_contig15429.3574.1 vs. uniprot
Match: A0A5J4YN41_PORPP (Geranylgeranyl diphosphate reductase n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4YN41_PORPP)

HSP 1 Score: 120 bits (300), Expect = 6.830e-30
Identity = 55/85 (64.71%), Postives = 71/85 (83.53%), Query Frame = 1
Query:   16 ILHPSSPDTTGMEMKHRIAVVGGGPSGSCAAEILAECEDVEVTLFERKMDNAKPCGGAIPLCMIAEFDLPANIVDRKVCAVGTIS 270
            +   +S +++G+EMK R+AVVGGGP+GSCAAE+LA+   ++VT+FERKMDNAKPCGGAIPLCM+ EFDLP NI+DRKV  +  IS
Sbjct:   46 VARSASKNSSGLEMKIRVAVVGGGPAGSCAAEVLAKA-GIDVTIFERKMDNAKPCGGAIPLCMVGEFDLPENIIDRKVRKMKMIS 129          
BLAST of mRNA_H-elongata_contig15429.3574.1 vs. uniprot
Match: A0A7S1E0V4_9STRA (Hypothetical protein n=1 Tax=Thalassionema nitzschioides TaxID=33649 RepID=A0A7S1E0V4_9STRA)

HSP 1 Score: 112 bits (279), Expect = 1.550e-29
Identity = 48/76 (63.16%), Postives = 63/76 (82.89%), Query Frame = 1
Query:   43 TGMEMKHRIAVVGGGPSGSCAAEILAECEDVEVTLFERKMDNAKPCGGAIPLCMIAEFDLPANIVDRKVCAVGTIS 270
            + ++MK+++AVVGGGPSG+CAAEI A+ + ++  LFERK+DNAKPCGGAIPLCM+ EFDLP  +VDRKV  +  IS
Sbjct:   34 SALDMKYKVAVVGGGPSGACAAEIFAQEKGIDTVLFERKLDNAKPCGGAIPLCMVGEFDLPETVVDRKVRKMNLIS 109          
BLAST of mRNA_H-elongata_contig15429.3574.1 vs. uniprot
Match: A0A7S1BKF5_9STRA (Hypothetical protein (Fragment) n=2 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BKF5_9STRA)

HSP 1 Score: 114 bits (285), Expect = 2.830e-29
Identity = 50/76 (65.79%), Postives = 63/76 (82.89%), Query Frame = 1
Query:   43 TGMEMKHRIAVVGGGPSGSCAAEILAECEDVEVTLFERKMDNAKPCGGAIPLCMIAEFDLPANIVDRKVCAVGTIS 270
            T ++MK+R+AVVGGGPSG+CAAEI A+ + ++  LFERK+DNAKPCGGAIPLCM+ EFDLP  +VDRKV  +  IS
Sbjct:   39 TALDMKYRVAVVGGGPSGACAAEIFAQEKSIDTVLFERKLDNAKPCGGAIPLCMVGEFDLPETVVDRKVRQMKLIS 114          
BLAST of mRNA_H-elongata_contig15429.3574.1 vs. uniprot
Match: A0A7S2P3F7_9STRA (Geranylgeranyl diphosphate reductase n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2P3F7_9STRA)

HSP 1 Score: 117 bits (293), Expect = 5.980e-29
Identity = 50/77 (64.94%), Postives = 67/77 (87.01%), Query Frame = 1
Query:   40 TTGMEMKHRIAVVGGGPSGSCAAEILAECEDVEVTLFERKMDNAKPCGGAIPLCMIAEFDLPANIVDRKVCAVGTIS 270
            T+ ++MK+R+AVVGGGPSG+CAAEI A+ +++E T+FERK+DNAKPCGGAIPLCM+ EFD+P ++VDRKV  +  IS
Sbjct:   29 TSALDMKYRVAVVGGGPSGACAAEIFAQDKNLETTMFERKLDNAKPCGGAIPLCMVGEFDIPEDVVDRKVRKMNLIS 105          
BLAST of mRNA_H-elongata_contig15429.3574.1 vs. uniprot
Match: A0A7S2N464_9STRA (Geranylgeranyl diphosphate reductase n=2 Tax=Lithodesmiaceae TaxID=49247 RepID=A0A7S2N464_9STRA)

HSP 1 Score: 115 bits (289), Expect = 2.420e-28
Identity = 51/81 (62.96%), Postives = 67/81 (82.72%), Query Frame = 1
Query:   28 SSPDTTGMEMKHRIAVVGGGPSGSCAAEILAECEDVEVTLFERKMDNAKPCGGAIPLCMIAEFDLPANIVDRKVCAVGTIS 270
            +S  +T +EMK+++AVVGGGPSG+CAAEI A+ + ++  LFERK+DNAKPCGGAIPLCM+ EFDLP ++VDRKV  +  IS
Sbjct:   33 TSSSSTCLEMKYKVAVVGGGPSGACAAEIFAQEKGIDTVLFERKLDNAKPCGGAIPLCMVGEFDLPESVVDRKVRKMNLIS 113          
BLAST of mRNA_H-elongata_contig15429.3574.1 vs. uniprot
Match: A0A7S2R6P8_9STRA (Geranylgeranyl diphosphate reductase (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2R6P8_9STRA)

HSP 1 Score: 114 bits (285), Expect = 2.750e-28
Identity = 51/81 (62.96%), Postives = 66/81 (81.48%), Query Frame = 1
Query:   28 SSPDTTGMEMKHRIAVVGGGPSGSCAAEILAECEDVEVTLFERKMDNAKPCGGAIPLCMIAEFDLPANIVDRKVCAVGTIS 270
            +S  +T ++MK+++AVVGGGPSG+CAAEI A+ + ++  LFERKMDNAKPCGGAIPLCMI EFD+P + VDRKV  +  IS
Sbjct:   36 ASSSSTSLDMKYKVAVVGGGPSGACAAEIFAQEKGIDTVLFERKMDNAKPCGGAIPLCMIGEFDIPESTVDRKVRRMKLIS 116          
BLAST of mRNA_H-elongata_contig15429.3574.1 vs. uniprot
Match: A0A7S0CD57_9STRA (Hypothetical protein (Fragment) n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0CD57_9STRA)

HSP 1 Score: 111 bits (277), Expect = 4.060e-28
Identity = 48/76 (63.16%), Postives = 62/76 (81.58%), Query Frame = 1
Query:   43 TGMEMKHRIAVVGGGPSGSCAAEILAECEDVEVTLFERKMDNAKPCGGAIPLCMIAEFDLPANIVDRKVCAVGTIS 270
            + + M +++AVVGGGPSG+CAAEI A+ ++++  LFERKMDNAKPCGGAIPLCMI EFD+P  +VDRKV  +  IS
Sbjct:   55 SALSMNYKVAVVGGGPSGACAAEIFAQEQNIDTVLFERKMDNAKPCGGAIPLCMIGEFDMPETVVDRKVRKMNLIS 130          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig15429.3574.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FRX5_ECTSI3.500e-3474.07Geranylgeranyl diphosphate reductase n=2 Tax=Ectoc... [more]
K0T1J9_THAOC5.220e-3153.68Uncharacterized protein n=1 Tax=Thalassiosira ocea... [more]
A0A7S2R5C4_9STRA4.900e-3065.79Hypothetical protein (Fragment) n=1 Tax=Eucampia a... [more]
A0A5J4YN41_PORPP6.830e-3064.71Geranylgeranyl diphosphate reductase n=1 Tax=Porph... [more]
A0A7S1E0V4_9STRA1.550e-2963.16Hypothetical protein n=1 Tax=Thalassionema nitzsch... [more]
A0A7S1BKF5_9STRA2.830e-2965.79Hypothetical protein (Fragment) n=2 Tax=Corethron ... [more]
A0A7S2P3F7_9STRA5.980e-2964.94Geranylgeranyl diphosphate reductase n=1 Tax=Lepto... [more]
A0A7S2N464_9STRA2.420e-2862.96Geranylgeranyl diphosphate reductase n=2 Tax=Litho... [more]
A0A7S2R6P8_9STRA2.750e-2862.96Geranylgeranyl diphosphate reductase (Fragment) n=... [more]
A0A7S0CD57_9STRA4.060e-2863.16Hypothetical protein (Fragment) n=1 Tax=Proboscia ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig15429contigH-elongata_contig15429:490..798 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score132.1
Seed ortholog evalue1.5e-28
Seed eggNOG ortholog2880.D7FRX5
Preferred nameGgh
KEGG rclassRC00212,RC00522,RC01823
KEGG koko:K10960
KEGG ReactionR02063,R08754,R08755,R08756,R11226,R11518
KEGG Pathwayko00860,ko00900,ko01100,ko01110,map00860,map00900,map01100,map01110
GOsGO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006629,GO:0006644,GO:0006720,GO:0006721,GO:0006725,GO:0006766,GO:0006775,GO:0006778,GO:0006779,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008299,GO:0008610,GO:0008654,GO:0009058,GO:0009110,GO:0009507,GO:0009526,GO:0009534,GO:0009535,GO:0009536,GO:0009579,GO:0009941,GO:0009987,GO:0010189,GO:0015994,GO:0015995,GO:0016020,GO:0016114,GO:0016491,GO:0018130,GO:0019438,GO:0019637,GO:0031967,GO:0031975,GO:0031976,GO:0031984,GO:0033013,GO:0033014,GO:0033385,GO:0033519,GO:0033521,GO:0034357,GO:0034641,GO:0042360,GO:0042362,GO:0042440,GO:0042651,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044271,GO:0044281,GO:0044283,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044436,GO:0044444,GO:0044446,GO:0044464,GO:0045550,GO:0046148,GO:0046483,GO:0051186,GO:0051188,GO:0055035,GO:0055114,GO:0071704,GO:0090407,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901615,GO:1901617
EggNOG free text desc.geranylgeranyl diphosphate reductase activity
EggNOG OGs2QQWY@2759,COG0644@1
EC1.3.1.111,1.3.1.83
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Hectar predicted targeting categoryother localisation
Exons1
Model size309
Cds size309
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929911.2739735-CDS-H-elongata_contig15429:489..7981622929911.2739735-CDS-H-elongata_contig15429:489..798Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15429 490..798 -
1691679205.3373582-CDS-H-elongata_contig15429:489..7981691679205.3373582-CDS-H-elongata_contig15429:489..798Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15429 490..798 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig15429.3574.1prot_H-elongata_contig15429.3574.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig15429 490..798 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig15429.3574.1

>prot_H-elongata_contig15429.3574.1 ID=prot_H-elongata_contig15429.3574.1|Name=mRNA_H-elongata_contig15429.3574.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=103bp
FLFSFILHPSSPDTTGMEMKHRIAVVGGGPSGSCAAEILAECEDVEVTLF
ERKMDNAKPCGGAIPLCMIAEFDLPANIVDRKVCAVGTISYQVQCRVLIS
IY*
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mRNA from alignment at H-elongata_contig15429:490..798-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig15429.3574.1 ID=mRNA_H-elongata_contig15429.3574.1|Name=mRNA_H-elongata_contig15429.3574.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=309bp|location=Sequence derived from alignment at H-elongata_contig15429:490..798- (Himanthalia elongata Himel1 dioecious)
TTCTTGTTTTCCTTCATCCTTCATCCTTCATCTCCAGACACCACGGGGAT GGAGATGAAGCACAGGATCGCGGTCGTGGGGGGCGGCCCATCCGGTTCAT GTGCCGCGGAGATCCTGGCAGAGTGCGAGGACGTGGAGGTGACTCTGTTC GAGAGAAAGATGGACAATGCCAAGCCCTGCGGTGGCGCCATTCCCCTCTG CATGATCGCCGAGTTCGACCTGCCCGCAAATATCGTTGACAGAAAGGTAT GTGCAGTAGGTACTATTTCATACCAGGTACAATGTCGTGTGTTAATATCA ATATATTAG
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Coding sequence (CDS) from alignment at H-elongata_contig15429:490..798-

>mRNA_H-elongata_contig15429.3574.1 ID=mRNA_H-elongata_contig15429.3574.1|Name=mRNA_H-elongata_contig15429.3574.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=618bp|location=Sequence derived from alignment at H-elongata_contig15429:490..798- (Himanthalia elongata Himel1 dioecious)
TTCTTGTTTTCCTTCATCCTTCATCCTTCATCTCCAGACACCACGGGGAT
GGAGATGAAGCACAGGATCGCGGTCGTGGGGGGCGGCCCATCCGGTTCAT
GTGCCGCGGAGATCCTGGCAGAGTGCGAGGACGTGGAGGTGACTCTGTTC
GAGAGAAAGATGGACAATGCCAAGCCCTGCGGTGGCGCCATTCCCCTCTG
CATGATCGCCGAGTTCGACCTGCCCGCAAATATCGTTGACAGAAAGGTAT
GTGCAGTAGGTACTATTTCATACCAGGTACAATGTCGTGTGTTAATATCA
ATATATTAGTTCTTGTTTTCCTTCATCCTTCATCCTTCATCTCCAGACAC
CACGGGGATGGAGATGAAGCACAGGATCGCGGTCGTGGGGGGCGGCCCAT
CCGGTTCATGTGCCGCGGAGATCCTGGCAGAGTGCGAGGACGTGGAGGTG
ACTCTGTTCGAGAGAAAGATGGACAATGCCAAGCCCTGCGGTGGCGCCAT
TCCCCTCTGCATGATCGCCGAGTTCGACCTGCCCGCAAATATCGTTGACA
GAAAGGTATGTGCAGTAGGTACTATTTCATACCAGGTACAATGTCGTGTG
TTAATATCAATATATTAG
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