mRNA_H-elongata_contig154052.3564.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig154052.3564.1 vs. uniprot
Match: A0A6H5KVY2_9PHAE (TAZ-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVY2_9PHAE) HSP 1 Score: 204 bits (519), Expect = 7.410e-58 Identity = 94/132 (71.21%), Postives = 108/132 (81.82%), Query Frame = 1
Query: 49 DHEAQDGIAPFDTDVVAGDDSPGCPARRLSTFQASRLLVLMAHARTCPGHHANPQHAEVCRSTKFLMLHIRDCNGRVEHGRTGNPCEHLWCRPCKSLLSHLVRCPMPSTCRICTPQDLPDQLRLLRELNAAR 444
D ++GIA FDTD++AGD GC RLSTFQASRLLVLM+HARTCPG HANP+HAEVC+STKFLMLH+RDC G H +G+PCEH WCRPCKSLLSHL+RCP P+TCRICTP DLP LR LR+LN A+
Sbjct: 763 DDREREGIAAFDTDIIAGDSQAGCKEGRLSTFQASRLLVLMSHARTCPGRHANPKHAEVCQSTKFLMLHMRDCTG---HTASGDPCEHRWCRPCKSLLSHLIRCPDPNTCRICTPLDLPGPLRQLRDLNVAQ 891
BLAST of mRNA_H-elongata_contig154052.3564.1 vs. uniprot
Match: D7FUA8_ECTSI (TAZ-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUA8_ECTSI) HSP 1 Score: 200 bits (508), Expect = 6.180e-57 Identity = 99/147 (67.35%), Postives = 113/147 (76.87%), Query Frame = 1
Query: 10 YGSDSCSETDDD--DDHEAQDGIAPFDTDVVAGDDSPGCPARRLSTFQASRLLVLMAHARTCPGHHANPQHAEVCRSTKFLMLHIRDCNGRVEHGRTGNPCEHLWCRPCKSLLSHLVRCPMPSTCRICTPQDLPDQLRLLRELNAAR 444
YGS+SCS++DDD DD ++GIA FDTD++AGD GC RLSTFQASRLLVLM+HARTCPGHHANP+HAEVCRSTKFL +G +PCEH WCRPCKSLLSHLVRCP P+TCRICTP DLP LR LR+LN A+
Sbjct: 533 YGSESCSDSDDDVTDDGREREGIAAFDTDIIAGDSQAGCKEGRLSTFQASRLLVLMSHARTCPGHHANPKHAEVCRSTKFLXXXXXXXXXXXXNG---DPCEHRWCRPCKSLLSHLVRCPDPNTCRICTPLDLPGPLRQLRDLNVAQ 676
BLAST of mRNA_H-elongata_contig154052.3564.1 vs. uniprot
Match: A0A7S2C9V7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2C9V7_9STRA) HSP 1 Score: 134 bits (337), Expect = 2.380e-37 Identity = 59/102 (57.84%), Postives = 76/102 (74.51%), Query Frame = 1
Query: 130 RLSTFQASRLLVLMAHARTCPGHHANPQHAEVCRSTKFLMLHIRDCNGRVEHGRTGNPCEHLWCRPCKSLLSHLVRCPMPSTCRICTPQDLPDQLRLLRELN 435
+++ QAS+LLVL+ HARTCPGHH + +H+EVC+S K+LMLHIRDC G+ G C WC+PCK+LL+HLVRC P +C IC+P DLP LR LR+LN
Sbjct: 22 KMTHRQASKLLVLITHARTCPGHHMSHRHSEVCKSVKYLMLHIRDCCGKTSDG---TECSFPWCKPCKALLAHLVRCNKPDSCDICSPYDLPPALRKLRQLN 120
BLAST of mRNA_H-elongata_contig154052.3564.1 vs. uniprot
Match: A0A7S1TU47_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TU47_9STRA) HSP 1 Score: 135 bits (340), Expect = 1.440e-36 Identity = 65/129 (50.39%), Postives = 87/129 (67.44%), Query Frame = 1
Query: 82 DTDVVAGDDSPGCPARRLSTFQASRLLVLMAHARTCPGHHANPQHAEVCRSTKFLMLHIRDCNGRVEHGRTGNPCEHLWCRPCKSLLSHLVRCPMPSTCRICTPQDLPDQLRLLRELNAARDSATIVAA 468
D D+ +S +S ++S+LL+L+ HARTCPG H + +HAEVC+S K+LMLHIRDC+GR+ G+ PC WCRPCK+LLSHLV+C P+TC IC P +LP L+ L+ LN R+ T AA
Sbjct: 105 DNDISTDTESDMNDEFNMSPEKSSKLLILICHARTCPGKHRSRRHAEVCKSIKYLMLHIRDCSGRLPDGQ---PCPFEWCRPCKNLLSHLVKCFDPNTCAICNPWNLPRSLQELKTLNQLREQVTASAA 230
BLAST of mRNA_H-elongata_contig154052.3564.1 vs. uniprot
Match: A0A7R9YGR4_9STRA (Hypothetical protein n=2 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YGR4_9STRA) HSP 1 Score: 130 bits (327), Expect = 1.280e-32 Identity = 59/108 (54.63%), Postives = 77/108 (71.30%), Query Frame = 1
Query: 133 LSTFQASRLLVLMAHARTCPGHHANPQHAEVCRSTKFLMLHIRDCNGRVEHGRTGNPCEHLWCRPCKSLLSHLVRCPMPSTCRICTPQDLPDQLRLLRELNAARDSAT 456
LS ++S+LL+L+ HARTCPG H + +HAEVC+S K+LMLHIRDC+GR+ G++ C WCRPCK LLSHLV+C P+TC IC P +LP + L LN R+ T
Sbjct: 362 LSPDKSSKLLILICHARTCPGKHRSKRHAEVCKSIKYLMLHIRDCSGRLPDGQS---CPFEWCRPCKKLLSHLVKCFEPNTCAICNPFNLPRSMEQLMTLNRLREQVT 466
BLAST of mRNA_H-elongata_contig154052.3564.1 vs. uniprot
Match: A0A6H5KT72_9PHAE (TAZ-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KT72_9PHAE) HSP 1 Score: 129 bits (323), Expect = 2.070e-31 Identity = 60/113 (53.10%), Postives = 80/113 (70.80%), Query Frame = 1
Query: 133 LSTFQASRLLVLMAHARTCPGHHANPQHAEVCRSTKFLMLHIRDCNGRVEHGRTGNPCEHLWCRPCKSLLSHLVRCPMPSTCRICTPQDLPDQLRLLRELNAARDSATIVAAK 471
L + QA++LLVLM HAR CPG+H + + AEVCRS KFLMLH+RDC+G+ R G+PC WC PC SLL HL++CP + C++C P+ LP L+ LR LN R S+T+ A+
Sbjct: 564 LDSDQAAKLLVLMCHARHCPGNHRSARLAEVCRSVKFLMLHLRDCDGKT---RNGDPCPMPWCEPCTSLLHHLIQCPESTGCKVCDPEHLPPPLQQLRALN--RSSSTLATAQ 671
BLAST of mRNA_H-elongata_contig154052.3564.1 vs. uniprot
Match: W7U3G5_9STRA (TAZ-type domain-containing protein n=3 Tax=Monodopsidaceae TaxID=425072 RepID=W7U3G5_9STRA) HSP 1 Score: 110 bits (276), Expect = 4.540e-25 Identity = 50/87 (57.47%), Postives = 58/87 (66.67%), Query Frame = 1
Query: 136 STFQASRLLVLMAHARTCPGHHANPQHAEVCRSTKFLMLHIRDCNGRVEHGRTGNPCEHLWCRPCKSLLSHLVRCPMPSTCRICTPQ 396
S QAS++L LM+HARTCPGHH + H VC STK+LMLH+RDC+G+ G C WCRPCK LL HLVRC C IC PQ
Sbjct: 550 SPAQASQILELMSHARTCPGHHHSEAHRAVCTSTKYLMLHVRDCDGKTLDGEA---CGFSWCRPCKHLLGHLVRCYESEQCSICRPQ 633
BLAST of mRNA_H-elongata_contig154052.3564.1 vs. uniprot
Match: A0A6U3TJG2_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A6U3TJG2_9STRA) HSP 1 Score: 109 bits (273), Expect = 1.270e-24 Identity = 58/126 (46.03%), Postives = 70/126 (55.56%), Query Frame = 1
Query: 133 LSTFQASRLLVLMAHARTCPGHHANPQHAEVCRSTKFLMLHIRDCNGRVEHGRTGNPCEHLWCRPCKSLLSHLVRCPMPSTCRICTPQDLPDQLRLLRELNAARDS---------ATIVAAKKMEL 483
LS QA RLLVL+ HA TCPG H P+H VC STK+LMLH+RDC G + +G + C WCR K LL HLV C C IC P+ LP L L LN R A + AAK+ ++
Sbjct: 783 LSDDQARRLLVLIEHASTCPGRHQCPKHRNVCHSTKYLMLHVRDCTGLLSNG---DVCPFPWCRKVKHLLYHLVSCEKGKECSICCPEKLPSNLVALTGLNQHRREKFRERTKALAAVAAAKRQQM 905
BLAST of mRNA_H-elongata_contig154052.3564.1 vs. uniprot
Match: D8LKM8_ECTSI (TAZ-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKM8_ECTSI) HSP 1 Score: 107 bits (268), Expect = 4.360e-24 Identity = 47/83 (56.63%), Postives = 61/83 (73.49%), Query Frame = 1
Query: 133 LSTFQASRLLVLMAHARTCPGHHANPQHAEVCRSTKFLMLHIRDCNGRVEHGRTGNPCEHLWCRPCKSLLSHLVRCPMPSTCR 381
L + QA++LLVLM HAR CPG+H + + AEVCRS KFLMLH+RDC+G+ R G+PC WC PC SLL HL++CP + C+
Sbjct: 439 LDSDQAAKLLVLMCHARHCPGNHRSARLAEVCRSVKFLMLHLRDCDGKT---RNGDPCPMPWCEPCMSLLHHLIQCPESTGCK 518
BLAST of mRNA_H-elongata_contig154052.3564.1 vs. uniprot
Match: A0A448ZEC8_9STRA (TAZ-type domain-containing protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZEC8_9STRA) HSP 1 Score: 103 bits (258), Expect = 1.350e-22 Identity = 51/104 (49.04%), Postives = 63/104 (60.58%), Query Frame = 1
Query: 133 LSTFQASRLLVLMAHARTCPGHHANPQHAEVCRSTKFLMLHIRDCNGRVEHGRTGNPCEHLWCRPCKSLLSHLVRCPMPSTCRICTPQDLPDQLRLLRELNAAR 444
LS AS+LL+LM HA TCP H +H +VCRS K++MLH+RDC G T + C WCR K LL HLV C P C IC+P++LP L+ L LN R
Sbjct: 949 LSDEHASKLLILMGHAATCPCQHKLEKHRDVCRSVKYMMLHVRDCPGTTS---TFDVCPFPWCRKVKHLLYHLVSCKEPDQCAICSPKELPKGLKGLVGLNGHR 1049 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig154052.3564.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 17
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig154052.3564.1 >prot_H-elongata_contig154052.3564.1 ID=prot_H-elongata_contig154052.3564.1|Name=mRNA_H-elongata_contig154052.3564.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=174bp SSRYGSDSCSETDDDDDHEAQDGIAPFDTDVVAGDDSPGCPARRLSTFQAback to top mRNA from alignment at H-elongata_contig154052:303..1186- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig154052.3564.1 ID=mRNA_H-elongata_contig154052.3564.1|Name=mRNA_H-elongata_contig154052.3564.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=884bp|location=Sequence derived from alignment at H-elongata_contig154052:303..1186- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig154052:303..1186- >mRNA_H-elongata_contig154052.3564.1 ID=mRNA_H-elongata_contig154052.3564.1|Name=mRNA_H-elongata_contig154052.3564.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1044bp|location=Sequence derived from alignment at H-elongata_contig154052:303..1186- (Himanthalia elongata Himel1 dioecious)back to top |