mRNA_H-elongata_contig1540.3561.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig1540.3561.1 vs. uniprot
Match: A0A6H5KE27_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KE27_9PHAE) HSP 1 Score: 676 bits (1743), Expect = 6.110e-229 Identity = 438/953 (45.96%), Postives = 527/953 (55.30%), Query Frame = 1
Query: 7 RSSRSIIETVARYPSGLTEAIILAELELMWRRDVRGAFVPGKLRGYLDAQYAPLSDVVQASIVRHSDQLVTIAEDHSGSVAVDGQSPATAGMYLHQNFKSCLHFLQQSGHDLLAPRRRVRLTGCRMLTGATINAGYGGV--------RKSQAVVG-STLLLTEYLAFVLDHRRSEDVMLARGAFGSTRVRETLSEVSNQRPFFLLCKVVEIRRPRQYHQDRAAGPARKKRLAVQTIVLECAVTGRKSRGGPCGRGHGGGDGVGADRSEAADGDAENGVEGEKETALLHLWDDQMCLASLFARGDGLAIYWPWVVEEDGEGGVLRSS---LGSSQLPVALHSQQGFAFESLT-PRLT-GWHYEYGSATALFVLPQESRESLFAAANGYSALDASTA----------------------VVA--------VCVNPREALPGSNTGPMRASDMPIDENGVRDLLQYPRRLSMADISPNMSNVSVYGQVVSVG-VPTTPLPAVLPTHSGPASATRGSLSQ-PQSKQLLLQQSASRAE------GIM--------------VFEVVIRNAGGEARVLCLGQEAVADALLCRPGHFVLACGLRTLSPAFPPL---ESHPGNGVVIVCGEPEVFIE----GTSTYAGNGNLGGRAGTHRGIGGR-SRILNASRLEGLLHCPFMSRHALLYSQTREAQPVATFACKVAVTWARWAFDGDGLWPVHRLCRARLPCHYEDLEASSVDSARMTGRKRFREIREPGGTRDLSA---QEALVTCPLCKS----------------------------------------------PVKLACPDEAELAYAPLLLALDDGSRCIVAECLDEVVLAALGGLHTNVFLQMTDGERRATLTSLIGRELRCVVGGNGSGVERNSAKGKVRGDCEGREGRDDESWWSG---VEYRVERIALANPAADLTHLL 2487
R ++IETV RYPSGLTEA+ILAELEL+WRRDVRGAFVPGKL+ YLDAQYAPLSDV+QA +VRHSDQLVT+ EDHS SV+ SPA MYLHQNFK CL + Q GHDLLAP R+VRLTGCR+LTGA R+S G STLLLTEYLAFVLDHRRS+D+ LA+G FG RV+ T E SN FF++CK RK++ +ET L HLWD+Q CL SLF +GDGL +YWPW+V E RSS GS+ P L SQQ L PR + GWH+EYGSATALFVLP+ESR LF+AAN S D + VVA VN R G G + +MPIDENGVRD+LQ+PRRL + D++PN+SN S+YGQVVSV VP + LPA+LP G +S + SLSQ P +L+QQ + + G++ V E++IR+ G ARVLC G++A ADAL CRPG +VL CGLRT + AFPP E P VV++CGE E T+ G G RAG G G S +LN S LEG LHCPF+SRH+LL+ + R P A+FACK AVTWARW FDGDGLW VHR C ARLPCH+ L AS+ D AR T RKR R++REPG R+ Q V CPLC++ V++AC DEAEL YAPLLLALDDG+RC+VAEC VV AA GG++ + FLQM + ER+AT+ SL+GRE+RCVVGG G+ E E W G V RVERIA NPAADL +L+
Sbjct: 12 RGHTTLIETVRRYPSGLTEAVILAELELLWRRDVRGAFVPGKLQAYLDAQYAPLSDVIQACVVRHSDQLVTLVEDHSCSVS-SNLSPAKVDMYLHQNFKPCLRYAQGVGHDLLAPGRKVRLTGCRLLTGAAXXXXXXXXXXXXXXXXRRSPNCGGPSTLLLTEYLAFVLDHRRSDDLRLAQGMFGGQRVKNTFEEKSNYEEFFVICK------------------GRKQQHXXXXXXXXXXXXXXXXX---------------------------------RETVLFHLWDEQTCLTSLFRKGDGLGVYWPWLVREQQP----RSSGGDQGSAAAPGGLPSQQQLVSSQLPLPRASSGWHFEYGSATALFVLPRESRAQLFSAANEDSNGDGFSTGGPGVESRSSXXXXXXXXXXXXVVASRKAFSRGAVVNGRGR--GGTVGAVH--EMPIDENGVRDVLQFPRRLFVTDLAPNLSNASIYGQVVSVASVPGSSLPAILPPSRGMSSLS-SSLSQLPLKPVMLMQQELQQLQQQESGMGLVAGRGAXXXXXXXXKVVELLIRDDRGTARVLCCGRKAAADALRCRPGQYVLVCGLRTFAAAFPPSDDSEQGPDGHVVVLCGEAEDMSREDAAATTGAEGRAAAGARAGEAGGGGDSVSGVLNTSSLEGFLHCPFLSRHSLLHDRRRTPGPRASFACKAAVTWARWTFDGDGLWAVHRRCGARLPCHFSALGASA-DPARRTSRKRQRDMREPGCVRNGGTGARQGVSVMCPLCQAGVSASLSSSQFTFVHDTAAAVLTVALISFCHWACVVARARRLLRQRSVRVACADEAELGYAPLLLALDDGTRCLVAECRSAVVSAAFGGMNAHDFLQMDEAERKATVDSLVGREIRCVVGGGGAASEVXXXXXXXXXXX------XXEGDWDGAGRVGLRVERIASVNPAADLAYLV 896
BLAST of mRNA_H-elongata_contig1540.3561.1 vs. uniprot
Match: D7FQ83_ECTSI (CDC24_OB1 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQ83_ECTSI) HSP 1 Score: 469 bits (1206), Expect = 4.740e-150 Identity = 346/903 (38.32%), Postives = 428/903 (47.40%), Query Frame = 1
Query: 1 WRRSSRSIIETVARYPSGLTEAIILAELELMWRRDVRGAFVPGKLRGYLDAQYAPLSDVVQASIVRHSDQLVTIAEDHSGSVAVDGQSPATAGMYLHQNFKSCLHFLQQSGHDLLAPRRRVRLTGCRMLTGATINAGYGGVRKSQAVVG---------STLLLTEYLAFVLDHRRSEDVMLARGAFGSTRVRETLSEVSNQRPFFLLCKVVEIRRPRQYHQDRAAGPARKKRLAVQTIVLECAVTGRKSRGGPCGRGHGGGDGVGADRSEAADGDAENGVEGEKETALLHLWDDQMCLASLFARGDGLAIYWPWVVEEDGEGGVLRSS---LGSSQLPVALHSQQGFAFESLT--PRLTGWHYEYGSATALFVLPQESRESLFAAANGYSALDASTA------------------------VVAVCVNPREA-LPGSNTGPM--RASDMPIDENGVRDLLQYPRRLSMADISPNMSNVSVYGQVVSVG-VPTTPLPAVLPTHSGPASATRGSLSQPQSKQLLLQQSASRAEGIM-------------------VFEVVIRNAGGEARVLCLGQEAVADALLCRPGHFVLACGLRTLSPAFPPL---ESHPGNGVVIVCGEPEVFIEGTSTYAGNGNLGGRAGTHRGIGGR-------SRILNASRLEGLLHCPFMSRHALLYSQTREAQPVATFACKVAVTWARWAFDGDGLWPVHRLCRARLPCHYEDLEASSVDSARMTGRKRFREIREPGGTRD--LSAQEAL-VTCPLCKSPVKLACPDEAELAYAPLLLALDDGSRCIVAECLDEVVLAALGGLHTNVFLQMTDGERRATLTSLIGRELRCVVGGNGSGVERNSAKGKVRGDCEGREGRDDESWWSGVEYRVERIALANPAADLTHLL 2487
W + R++IETV RYPSGLTEA+ILAELEL+ G +A P S + +R + + T + S + + CR+LTGA STLLLTEYLAFVLDHRRS+D+ LA+G FG RV++T E SN FF++CK GDGL +YWPW+V E RSS GS+ P L SQQ L GWH+EYGSATALFVLP+ESR LF+AAN S D + VV+ R A + G G A +MP DENGVRDLLQ+PRRL + D++PNMSN S+YGQVVSV VP + LPA+LP G +S++ SLSQ K ++L V E++IR+ G ARVLC G++A ADAL CRPG +VL CGLRT + AFPPL E P VV++CGE E A + GRA S +LN S LEG LHCPF+SRH+ L+ + R P A+ ACK AVTWARW FDGDGLW VHR C ARLPCH+ L AS+ D AR RKR R++REPG R AQ+ + V CPLC+S V++AC DEAEL YAPLLLALDDG+RC+VAEC VV AA GG++ + FLQM + ER+AT+ SL+GRE+RCVVGG+G+ E V RVERIA NPAADL +L+
Sbjct: 36 WSWTCRTLIETVRRYPSGLTEAVILAELELLCEGG-----------GTFEAPSCPES--FRPISMRSTPRCPTSSRRASFATLTNW---------------------------------------CRLLTGAXXXXXXXXXXXXXXXXXXXXXXXXXXSTLLLTEYLAFVLDHRRSDDLRLAQGMFGGLRVKDTFEEKSNYEEFFVVCK-----------------------------------------------------------------------------------------------GDGLGVYWPWLVREQQP----RSSGGDQGSAAAPGGLSSQQQLVSSQLPLPSDSFGWHFEYGSATALFVLPRESRAQLFSAANNDSNGDGFSTGGPGVESRSSXXXXXXXXXXXXXVVVSRKATSRGAGVDGRGRGGTVGAAHEMPADENGVRDLLQFPRRLFVTDLAPNMSNASIYGQVVSVASVPGSSLPAILPPSRGMSSSS-SSLSQLPLKPVMLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNVVELLIRDDRGTARVLCCGRKAAADALRCRPGQYVLVCGLRTFAAAFPPLDDSEQGPDGHVVVLCGEAEEMSR--EDAAATTDAEGRAAXXXXXXXXXXXXDSVSGVLNTSSLEGFLHCPFLSRHSFLHDRRRTPGPRASLACKAAVTWARWTFDGDGLWAVHRRCGARLPCHFSALGASA-DPARRISRKRPRDMREPGCVRSGRTGAQQGVSVICPLCQSSVRVACADEAELGYAPLLLALDDGTRCLVAECRSAVVTAAFGGMNAHDFLQMGEAERKATVDSLVGREIRCVVGGDGAASE---VXXXXXXXXXXXXXXXXXXXXXRVGLRVERIASVNPAADLAYLV 780
BLAST of mRNA_H-elongata_contig1540.3561.1 vs. uniprot
Match: A0A507ECL1_9FUNG (Uncharacterized protein n=2 Tax=Spizellomyces TaxID=4815 RepID=A0A507ECL1_9FUNG) HSP 1 Score: 90.1 bits (222), Expect = 6.320e-15 Identity = 112/446 (25.11%), Postives = 167/446 (37.44%), Query Frame = 1
Query: 1 WRRSSRSIIETVARYPSGLTEAIILAELELMWRRDVRGAFVPGKLRGYLDAQYAPLSDVVQASIVRHSDQLVTIAEDHSGSVAVDGQSPATAGMYLHQNFKSCLHFLQQSGHDLLAPRRRVRLTGCRMLTGATINAGYGGVRKSQAVVGSTLLLTEYLAFVLDHRRSEDVMLARGAFGSTRVRETLSEVSNQRPFFLLCKVVEIRRPRQYHQDRAAGPARKKRLAVQTIVLECAVTGRKSRGGPCGRGHGGGDGVGADRSEAADGDAENGVEGEKETALLHLWDDQMCLASLFARGDGLAIYWPWVVEEDGEGGVLRSSLGSSQLPVALHSQQGFAFESLTPRLTGWHYEYGSATALFVLPQESRESLFAAANGYSALDASTAVVAVCVNPREALPGSNTGPMRASDMPIDENGVRDLLQYPRRLSMADISPNMSNVSVYGQVVSV 1338
W ++ + +YPSGLTEAI+ AELE+ W +S VR +T++ D S + MYLHQ F C + +G L +VR+TG R +T V G+ LL TE++ F+L +D F + ++V R F L KV +I H R+ G R KRL V V + +V +E A L LWD+Q+ LASLF +GD LAI+ P+V E G R S L EYGS T +FV+P + + + E + + P + + +P D G+ D YPRRL + +++P M N++++G+V+ V
Sbjct: 49 WSWVFTRLLVLLGQYPSGLTEAIVNAELEMQWDEC--------------------------SSEVRRGVSKLTLS---------DPGSRRSIDMYLHQKF--CFLADECAGGFL----EKVRITGTRSVT--------------TPVGGTRLLPTEHMVFLLSESDDQDKKFLSDRFDESLSHVAAADVEEGRSFAFLVKVHQIG---TVHAARSHG--RLKRLHV--YVNDTSV---------------------------------------EENACLVLWDEQIGLASLFRKGDWLAIWRPYVTVERQAG---RDDTRSITL------------------------EYGSQTVIFVIPMDPTKEM------------------------ELMCSMASQPSQHA-VPRDARGILDFKWYPRRLLVTELAPKMINITIFGKVLEV 341
BLAST of mRNA_H-elongata_contig1540.3561.1 vs. uniprot
Match: UPI00077AD99D (uncharacterized protein LOC107341862 n=1 Tax=Acropora digitifera TaxID=70779 RepID=UPI00077AD99D) HSP 1 Score: 61.6 bits (148), Expect = 4.350e-6 Identity = 92/452 (20.35%), Postives = 168/452 (37.17%), Query Frame = 1
Query: 22 IIETVARYPSGLTEAIILAELELMWRR--DVRGAFVPGKLR-----GYLDAQYAPLSDVVQASIVRHSDQLVTIAEDHSG-SVAVDGQSPATAGMYLHQNFKSCLHFLQQSGHDLLAPRRRVRLTGCRMLTGATINAGYGGVRKSQAVVGSTLLLTEYLAFVLDHRRSEDVMLARGAFGSTRVRETLSEVSNQRPFF---LLCKVVEIRRPRQYHQDRAAGPARKKRLAVQTIVLECAVTGRKSRGGPCGRGHGGGDGVGADRSEAADGDAENGVEGEKETALLHLWDDQMCLASLFARGDGLAIYWPWVVEEDGEGGVLRSSLGSSQLPVALHSQQGFAFESLTPRLTGWHYEYGSATALFVLPQESRESLFAAANGYSALDASTAVVAVCVNPREALPGSNTGPMRASDMPIDENGVRDLLQYPRRLSMADISPNMSNVSVYGQVVSVGV 1344
++ ++RYPSG+T+AIILAE++ W + +G F K R ++++ +++A++ +++ T+ H+ ++ D + T GMYLHQ K CL LQ+ L + +R T CR++ G ++ V LL +E + + + + E G+F L+ RP + +V ++ H QT + C V+ E LWD+Q+ +A+LF GD LA+ P+VV E +L E G +T +F +P + + L + + + G+ M+ D G+ D +P ++ +D+ PNM+ V+++ + SVG+
Sbjct: 32 LVSLLSRYPSGITKAIILAEIQQSWNQFSQFQGRFEEQKARKVSVDSVTESRHIGYESILEATV----EKIETVPGTHTNIAILRDRKGRNTLGMYLHQ--KLCL--LQEE----LIKKLTLRFTSCRLVQGKGLSFAGHKVH---------LLPSENVVILCEEQDWEKFDNNFGSF--------LAIDDTSRPHHGPNVKVEVADMGFEETVHSPNG-----------QTSIRRCIRV----------------------------------VDSEGIHVSFCLWDEQLPMANLFKEGDTLALQQPFVVPNQDELFLL---------------------------------ECGPSTLIFCMPHDPLQELVS-------------------SQMSSTQGTPVSVMK------DNQGMLDYSSFPEQIFFSDVRPNMTRVTIFCTITSVGL 351
BLAST of mRNA_H-elongata_contig1540.3561.1 vs. uniprot
Match: UPI00106BFA99 (uncharacterized protein LOC114525665 n=1 Tax=Dendronephthya gigantea TaxID=151771 RepID=UPI00106BFA99) HSP 1 Score: 60.1 bits (144), Expect = 1.470e-5 Identity = 98/460 (21.30%), Postives = 165/460 (35.87%), Query Frame = 1
Query: 1 WRRSSRSIIETVARYPSGLTEAIILAELELMWRRDVR-----GAFVPGKLRGYLDAQYAPLSDVVQASI-----VRHSDQLVTIAEDHSGSVAVDGQSPATAGMYLHQNFKSCLHFLQQSGHDLLAPRRRVRLTGCRMLTGATINAGYGGVRKSQAVVGSTLLLTEYLAFVLDHRRSEDVMLARGAFGSTRVRETLSEVSNQRPF--FLLCKVVEIRRPRQYHQDRAAGPARKKRLAVQTIVLECAVTGRKSRGGPCGRGHGGGDGVGADRSEAADGDAENGVEGEKETALLHLWDDQMCLASLFARGDGLAIYWPWVVEEDGEGGVLRSSLGSSQLPVALHSQQGFAFESLTPRLTGWHYEYGSATALFVLPQESRESLFAAANGYSALDASTAVVAVCVNPREALPGSNTGPMRASDMPIDENGVRDLLQYPRRLSMADISPNMSNVSVYGQVVSVGV 1344
W ++ ++RYP+G+T+AI+L+ELE WR+ + G LR + +++ V + + V + V + +H S + T MYLHQ + + +G+ L R TGCR+ G R+++++ LL +E +FV V++ GA + E L E+ + + + KV EI + H R L I ++ A L+LW++ + +A LF GD L + +++ + E L E+G T +F P + +E LP G + + D G+ D YP RLS+++I+ NMSN+++ GQVVSVGV
Sbjct: 25 WGWFFTKLVTLLSRYPTGVTKAIMLSELECSWRKIEKLQAKGGMNSADSLRSIVLSRHLSPQAVFEVFLKEVKNVEATQTRVAVLMEHETS----SEHSFTMEMYLHQKLYGEVEQIMANGYKL-------RFTGCRLFDG----------RRNKSL---KLLPSE--SFV--------VLVNDGAIHNFTTLEGLDEMIDSQYINSIIKVKVSEISMKKSIHCQNGHTANRITVLVSDDIGIQ---------------------------------------------AKLNLWEEYLVMAKLFEAGDTLFMKQCFLLPDKSECFTL---------------------------------EFGPETIIFCQP--------------------------LTHEQEILPSQRDG-SKVFYVSKDNRGMLDFSMYPERLSISEINQNMSNITLTGQVVSVGV 345 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig1540.3561.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 5
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig1540.3561.1 >prot_H-elongata_contig1540.3561.1 ID=prot_H-elongata_contig1540.3561.1|Name=mRNA_H-elongata_contig1540.3561.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=832bp WRRSSRSIIETVARYPSGLTEAIILAELELMWRRDVRGAFVPGKLRGYLDback to top mRNA from alignment at H-elongata_contig1540:8659..15187- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig1540.3561.1 ID=mRNA_H-elongata_contig1540.3561.1|Name=mRNA_H-elongata_contig1540.3561.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=6529bp|location=Sequence derived from alignment at H-elongata_contig1540:8659..15187- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig1540:8659..15187- >mRNA_H-elongata_contig1540.3561.1 ID=mRNA_H-elongata_contig1540.3561.1|Name=mRNA_H-elongata_contig1540.3561.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=4992bp|location=Sequence derived from alignment at H-elongata_contig1540:8659..15187- (Himanthalia elongata Himel1 dioecious)back to top |