mRNA_H-elongata_contig154.3560.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig154.3560.1
Unique NamemRNA_H-elongata_contig154.3560.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig154.3560.1 vs. uniprot
Match: A0A6H5L6M5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6M5_9PHAE)

HSP 1 Score: 102 bits (255), Expect = 1.130e-24
Identity = 59/156 (37.82%), Postives = 87/156 (55.77%), Query Frame = 1 
Query:    4 ELEIRMLKAEVLETVLYGCVMWIPRTRHCDTLRRVHHSFLA--------SRTDHPISYLDTLMKTG-SESIETIMRKRRIPFAGFMARMDGTRLPKCVIFGEIMESAGCDGGKENGWMRCLLEVLNAFDINAD----QGMIAAQDEGEWRKTVEQG 432
            +L+IR+L+AEV+ET+LYGC  W     H   L   H  FL          R+D P+SY   L++ G  E+IE  +RKRR+ FAGF+ RM+  RLPK ++ GE+       GG+E+ W+  + E L AF++  +    +   +A+D   W   VE G
Sbjct:   38 QLKIRLLQAEVVETLLYGCASWSLTAEHYTKLNGTHRQFLTRCIGWSKRKRSDRPLSYAQALIQAGCEETIEATVRKRRLCFAGFVMRMEDNRLPKRMLLGEMAGGGEYRGGQESHWVSRVGEDLVAFNMGDEKEGGEWKESAKDSEVWNNKVEDG 193
[Close]
BLAST of mRNA_H-elongata_contig154.3560.1 vs. uniprot
Match: A0A6H5KGF6_9PHAE (Uncharacterized protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGF6_9PHAE)

HSP 1 Score: 103 bits (257), Expect = 1.540e-24
Identity = 56/149 (37.58%), Postives = 87/149 (58.39%), Query Frame = 1 
Query:    4 ELEIRMLKAEVLETVLYGCVMWIPRTRHCDTLRRVHHSFLA--------SRTDHPISYLDTLMKTG-SESIETIMRKRRIPFAGFMARMDGTRLPKCVIFGEIMESAGCDGGKENGWMRCLLEVLNAFDINADQGMIAAQDEGEWRKTV 423
            +L+IR+L+AEV+ET+LYGC  W     H   L   H  FL          R+D P+SY   L++ G  E+IE  +RKRR+ FAGF+ RM+ +RLPK ++ G +    G  GG+E+ W+  L E L AF++  ++      + G+W+++ 
Sbjct:   10 QLKIRLLQAEVVETLLYGCASWSLTAEHYTKLNGTHRQFLTRCIGWSKRKRSDRPLSYAQALIQAGCEETIEATVRKRRLCFAGFVMRMEDSRLPKHMLLGAMAGGVGYRGGQESDWVSRLGEDLVAFNMGDEK------EGGKWKESA 152
[Close]
BLAST of mRNA_H-elongata_contig154.3560.1 vs. uniprot
Match: A0A6H5KG97_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KG97_9PHAE)

HSP 1 Score: 105 bits (263), Expect = 2.230e-24
Identity = 58/149 (38.93%), Postives = 88/149 (59.06%), Query Frame = 1 
Query:    4 ELEIRMLKAEVLETVLYGCVMWIPRTRHCDTLRRVHHSFLA--------SRTDHPISYLDTLMKTG-SESIETIMRKRRIPFAGFMARMDGTRLPKCVIFGEIMESAGCDGGKENGWMRCLLEVLNAFDINADQGMIAAQDEGEWRKTV 423
            +L+IR+L+AEV+ET+LYGC  W     H   L   H  FL          R+D P+SY   L++ G  E+IE   RKRR+ F GF+ RM+ +RLPK ++ G +   AG  GG+E+ W+  L E L AF++ A++      + G+W+++V
Sbjct:  131 QLKIRLLQAEVVETLLYGCASWSLTAEHYTKLNGTHRQFLTRCIGWSKRKRSDRPLSYAQVLIQAGCEETIEATARKRRLCFVGFVMRMEDSRLPKRMLSGAMAGGAGYRGGQESDWVSRLGEDLVAFNMGAEK------EGGKWKESV 273
[Close]
BLAST of mRNA_H-elongata_contig154.3560.1 vs. uniprot
Match: A0A6H5K1C5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1C5_9PHAE)

HSP 1 Score: 103 bits (257), Expect = 4.330e-24
Identity = 56/149 (37.58%), Postives = 87/149 (58.39%), Query Frame = 1 
Query:    4 ELEIRMLKAEVLETVLYGCVMWIPRTRHCDTLRRVHHSFLA--------SRTDHPISYLDTLMKTG-SESIETIMRKRRIPFAGFMARMDGTRLPKCVIFGEIMESAGCDGGKENGWMRCLLEVLNAFDINADQGMIAAQDEGEWRKTV 423
            +L+IR+L+AEV+ET+LYGC  W     H   L   HH FL+         R+D P+SY   L++ G  E+IE  +RKRR+ FAGF+ RM+  RLP  ++ G +    G  GG+E+ W+  L E L AF++  ++      + G+W+++ 
Sbjct:   95 QLKIRLLQAEVVETLLYGCASWRLTAEHDTKLNGTHHQFLSRCIGWSKRKRSDRPLSYAQALIQAGCEETIEATVRKRRLCFAGFVMRMEDNRLPTRMLLGAMAGGVGYRGGQESDWVSRLGEDLVAFNMGDEK------EGGKWKESA 237
[Close]
BLAST of mRNA_H-elongata_contig154.3560.1 vs. uniprot
Match: A0A6H5L020_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L020_9PHAE)

HSP 1 Score: 106 bits (265), Expect = 5.180e-24
Identity = 61/156 (39.10%), Postives = 88/156 (56.41%), Query Frame = 1 
Query:    4 ELEIRMLKAEVLETVLYGCVMWIPRTRHCDTLRRVHHSFLA--------SRTDHPISYLDTLMKTG-SESIETIMRKRRIPFAGFMARMDGTRLPKCVIFGEIMESAGCDGGKENGWMRCLLEVLNAFDINADQGM----IAAQDEGEWRKTVEQG 432
            +L+IR+L+AEV+ET+LYGC  W     H   L   H  FL          R+D P+SY   L++ G  E+IE  +RKRR+ F GF+ RM+ +RLPK ++ G +    G  GG+E+ W+  L E L AF+I  ++G      +A+D   W   VE G
Sbjct:  602 QLKIRLLQAEVVETLLYGCASWSLTAEHYTKLNGTHRQFLTRCIGWSKRKRSDRPLSYAQALIQAGCEETIEATVRKRRLCFVGFVVRMEDSRLPKRMLSGAMAGGVGYRGGQESDWVSRLGEDLVAFNIGDEKGAGKWKESAKDPEVWYNNVEDG 757
[Close]
BLAST of mRNA_H-elongata_contig154.3560.1 vs. uniprot
Match: A0A6H5K065_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K065_9PHAE)

HSP 1 Score: 105 bits (263), Expect = 9.660e-24
Identity = 61/156 (39.10%), Postives = 87/156 (55.77%), Query Frame = 1 
Query:    4 ELEIRMLKAEVLETVLYGCVMWIPRTRHCDTLRRVHHSFLA--------SRTDHPISYLDTLMKTG-SESIETIMRKRRIPFAGFMARMDGTRLPKCVIFGEIMESAGCDGGKENGWMRCLLEVLNAFDIN----ADQGMIAAQDEGEWRKTVEQG 432
            +L+IR+L+AEV+ET+LYGC  W     H   L   H  FL          R+D P+SY   L++ G  E+IE  +RKRR+ FAGF+ RM+  RLPK ++ G +    G  GG+E+ W+  L E L AF++      D+   +A+D   W   VE G
Sbjct:  627 QLKIRLLQAEVVETLLYGCASWSLTVEHYTKLNGTHRQFLTRCIGWSKRQRSDRPLSYAQALIQAGCEETIEATVRKRRLCFAGFVMRMEDNRLPKRMLLGAMAGGVGYRGGQESDWVSRLGEDLVAFNMGDEKEGDKWKESAKDPEVWYNKVEDG 782
[Close]
BLAST of mRNA_H-elongata_contig154.3560.1 vs. uniprot
Match: A0A6H5JZD4_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZD4_9PHAE)

HSP 1 Score: 105 bits (262), Expect = 1.280e-23
Identity = 61/156 (39.10%), Postives = 87/156 (55.77%), Query Frame = 1 
Query:    4 ELEIRMLKAEVLETVLYGCVMWIPRTRHCDTLRRVHHSFLA--------SRTDHPISYLDTLMKTG-SESIETIMRKRRIPFAGFMARMDGTRLPKCVIFGEIMESAGCDGGKENGWMRCLLEVLNAFDINADQGMI----AAQDEGEWRKTVEQG 432
            +L+IR+L+AEV+ET+LYGC  W   T H   L   H  FL          R+D P+SY   L++ G  E+IE  +RKRR+ FAGF+ RM+  RLPK ++ G +    G  GG+E+ W+  L E L AF++  ++        A+D   W   VE G
Sbjct:  459 QLKIRLLQAEVVETLLYGCASWSLTTEHYAKLNETHRQFLTRCIGWSKRKRSDRPLSYAQALIQAGCEETIEATVRKRRLCFAGFVMRMEDNRLPKRMLLGAMAGGVGYRGGQESDWVSRLGEDLVAFNMGDEKEGAKWKECAKDPEVWYNKVEDG 614
[Close]
BLAST of mRNA_H-elongata_contig154.3560.1 vs. uniprot
Match: A0A6H5JGX2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGX2_9PHAE)

HSP 1 Score: 105 bits (261), Expect = 1.810e-23
Identity = 60/156 (38.46%), Postives = 89/156 (57.05%), Query Frame = 1 
Query:    4 ELEIRMLKAEVLETVLYGCVMWIPRTRHCDTLRRVHHSFLASRT--------DHPISYLDTLMKTG-SESIETIMRKRRIPFAGFMARMDGTRLPKCVIFGEIMESAGCDGGKENGWMRCLLEVLNAFDINADQG----MIAAQDEGEWRKTVEQG 432
            +L+IR+L+AEV++T+LYGC  W P   H   L   H  FL   T        D P+SY   L++ G  E+IE  +RKRR+ FAGF+ RM+ +RLPK ++ G +    G  GG+E+ W+  L E L AF+++ ++       +A+D   W   VE G
Sbjct:  628 QLKIRLLQAEVVDTLLYGCASWSPTAEHYTKLNGTHRQFLTRCTGWSKRKCSDRPLSYAQALIQAGCEETIEATVRKRRLCFAGFVMRMEDSRLPKRMLLGAMAGGVGYRGGQESDWVSRLGEDLVAFNMSDEKEGGKWKESAKDPEVWYNKVEDG 783
[Close]
BLAST of mRNA_H-elongata_contig154.3560.1 vs. uniprot
Match: A0A6H5KSH7_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSH7_9PHAE)

HSP 1 Score: 102 bits (254), Expect = 2.120e-23
Identity = 57/149 (38.26%), Postives = 84/149 (56.38%), Query Frame = 1 
Query:    4 ELEIRMLKAEVLETVLYGCVMWIPRTRHCDTLRRVHHSFLA--------SRTDHPISYLDTLMKTG-SESIETIMRKRRIPFAGFMARMDGTRLPKCVIFGEIMESAGCDGGKENGWMRCLLEVLNAFDINADQGMIAAQDEGEWRKTV 423
            +L+IR+L+AEV++T+LYGC  W     H   L   H  FL          R+D P+SY   L++ G  E+IE  +RKRR+ FAGF+ RM+  RLPK ++ G +    G  GG+E+ W+  L E L AF      GM   ++ G W+++ 
Sbjct:   95 QLKIRLLQAEVVQTLLYGCASWSLAAEHYTKLNGTHRQFLTRCIGWSKRKRSDRPLSYAQALIQAGCEETIEATVRKRRLCFAGFVMRMEDNRLPKRMLLGAMAGGTGYRGGQESDWVYRLGEDLVAF------GMKEEKEGGRWKESA 237
[Close]
BLAST of mRNA_H-elongata_contig154.3560.1 vs. uniprot
Match: A0A6H5L5T8_9PHAE (Reverse transcriptase domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5T8_9PHAE)

HSP 1 Score: 103 bits (257), Expect = 3.050e-23
Identity = 58/149 (38.93%), Postives = 84/149 (56.38%), Query Frame = 1 
Query:    4 ELEIRMLKAEVLETVLYGCVMWIPRTRHCDTLRRVHHSFLA--------SRTDHPISYLDTLMKTG-SESIETIMRKRRIPFAGFMARMDGTRLPKCVIFGEIMESAGCDGGKENGWMRCLLEVLNAFDINADQGMIAAQDEGEWRKTV 423
            +L+IR+L+AEV+ET+LYGC  W     H   L   H  FL          R+D P+SY   L++ G  E+IE  +RKRR+ FAGF+ RM+  RLPK ++ G +    G  GG+E+ W+  L E L AF      GM   ++ G W+++ 
Sbjct:  215 QLKIRLLQAEVVETLLYGCASWSLTAEHYTKLNGTHRQFLTRCIGWSKRKRSDRPLSYAQALIQAGCEETIEATVRKRRLCFAGFVMRMEDNRLPKRMLLGAMAGGTGYRGGQESDWVYRLGEDLVAF------GMKEEKEGGRWKESA 357
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig154.3560.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L6M5_9PHAE1.130e-2437.82Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KGF6_9PHAE1.540e-2437.58Uncharacterized protein n=4 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KG97_9PHAE2.230e-2438.93Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K1C5_9PHAE4.330e-2437.58Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L020_9PHAE5.180e-2439.10Reverse transcriptase domain-containing protein (F... [more]
A0A6H5K065_9PHAE9.660e-2439.10Reverse transcriptase domain-containing protein n=... [more]
A0A6H5JZD4_9PHAE1.280e-2339.10Reverse transcriptase domain-containing protein n=... [more]
A0A6H5JGX2_9PHAE1.810e-2338.46Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KSH7_9PHAE2.120e-2338.26Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L5T8_9PHAE3.050e-2338.93Reverse transcriptase domain-containing protein n=... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig154contigH-elongata_contig154:6261..6692 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score70.1
Seed ortholog evalue9.2e-10
Seed eggNOG ortholog13735.ENSPSIP00000001008
EggNOG free text desc.Ribonuclease H protein
EggNOG OGs3A35Z@33154,3BQYF@33208,3D7GC@33213,48EZY@7711,49BMJ@7742,KOG1075@1,KOG1075@2759
COG Functional cat.S
Best tax levelVertebrata
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size432
Cds size414
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929909.9629037-CDS-H-elongata_contig154:6260..66741622929909.9629037-CDS-H-elongata_contig154:6260..6674Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig154 6261..6674 -
1691679204.8706744-CDS-H-elongata_contig154:6260..66741691679204.8706744-CDS-H-elongata_contig154:6260..6674Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig154 6261..6674 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929909.9749203-UTR-H-elongata_contig154:6674..66921622929909.9749203-UTR-H-elongata_contig154:6674..6692Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig154 6675..6692 -
1691679204.8886206-UTR-H-elongata_contig154:6674..66921691679204.8886206-UTR-H-elongata_contig154:6674..6692Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig154 6675..6692 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig154.3560.1prot_H-elongata_contig154.3560.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig154 6261..6674 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig154.3560.1

>prot_H-elongata_contig154.3560.1 ID=prot_H-elongata_contig154.3560.1|Name=mRNA_H-elongata_contig154.3560.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=138bp
MLKAEVLETVLYGCVMWIPRTRHCDTLRRVHHSFLASRTDHPISYLDTLM
KTGSESIETIMRKRRIPFAGFMARMDGTRLPKCVIFGEIMESAGCDGGKE
NGWMRCLLEVLNAFDINADQGMIAAQDEGEWRKTVEQG
back to top

mRNA from alignment at H-elongata_contig154:6261..6692-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig154.3560.1 ID=mRNA_H-elongata_contig154.3560.1|Name=mRNA_H-elongata_contig154.3560.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=432bp|location=Sequence derived from alignment at H-elongata_contig154:6261..6692- (Himanthalia elongata Himel1 dioecious)
CTGGAGCTCGAAATCCGGATGCTGAAAGCCGAGGTACTTGAGACGGTGCT
GTACGGCTGCGTTATGTGGATCCCGCGCACGAGACACTGCGACACGCTGC
GCCGAGTCCACCACAGCTTCTTGGCCAGCCGCACTGATCACCCGATCTCA
TATCTGGACACCCTCATGAAGACGGGAAGTGAAAGCATCGAAACGATCAT
GCGCAAGAGGCGGATCCCGTTCGCGGGATTTATGGCGCGTATGGACGGTA
CGAGACTGCCGAAGTGCGTGATATTCGGAGAAATCATGGAGAGTGCGGGC
TGCGATGGAGGGAAGGAAAATGGGTGGATGAGGTGCCTTCTTGAAGTCCT
TAACGCTTTCGATATCAACGCCGACCAGGGGATGATTGCAGCACAGGACG
AGGGGGAATGGCGCAAGACGGTGGAACAAGGG
back to top

Coding sequence (CDS) from alignment at H-elongata_contig154:6261..6692-

>mRNA_H-elongata_contig154.3560.1 ID=mRNA_H-elongata_contig154.3560.1|Name=mRNA_H-elongata_contig154.3560.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=828bp|location=Sequence derived from alignment at H-elongata_contig154:6261..6692- (Himanthalia elongata Himel1 dioecious)
ATGCTGAAAGCCGAGGTACTTGAGACGGTGCTGTACGGCTGCGTTATGTG
GATCCCGCGCACGAGACACTGCGACACGCTGCGCCGAGTCCACCACAGCT
TCTTGGCCAGCCGCACTGATCACCCGATCTCATATCTGGACACCCTCATG
AAGACGGGAAGTGAAAGCATCGAAACGATCATGCGCAAGAGGCGGATCCC
GTTCGCGGGATTTATGGCGCGTATGGACGGTACGAGACTGCCGAAGTGCG
TGATATTCGGAGAAATCATGGAGAGTGCGGGCTGCGATGGAGGGAAGGAA
AATGGGTGGATGAGGTGCCTTCTTGAAGTCCTTAACGCTTTCGATATCAA
CGCCGACCAGGGGATGATTGCAGCACAGGACGAGGGGGAATGGCGCAAGA
CGGTGGAACAAGGGATGCTGAAAGCCGAGGTACTTGAGACGGTGCTGTAC
GGCTGCGTTATGTGGATCCCGCGCACGAGACACTGCGACACGCTGCGCCG
AGTCCACCACAGCTTCTTGGCCAGCCGCACTGATCACCCGATCTCATATC
TGGACACCCTCATGAAGACGGGAAGTGAAAGCATCGAAACGATCATGCGC
AAGAGGCGGATCCCGTTCGCGGGATTTATGGCGCGTATGGACGGTACGAG
ACTGCCGAAGTGCGTGATATTCGGAGAAATCATGGAGAGTGCGGGCTGCG
ATGGAGGGAAGGAAAATGGGTGGATGAGGTGCCTTCTTGAAGTCCTTAAC
GCTTTCGATATCAACGCCGACCAGGGGATGATTGCAGCACAGGACGAGGG
GGAATGGCGCAAGACGGTGGAACAAGGG
back to top