mRNA_H-elongata_contig153859.3556.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig153859.3556.1
Unique NamemRNA_H-elongata_contig153859.3556.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig153859.3556.1 vs. uniprot
Match: A0A2H1VB05_SPOFR (SFRICE_041671 (Fragment) n=1 Tax=Spodoptera frugiperda TaxID=7108 RepID=A0A2H1VB05_SPOFR)

HSP 1 Score: 51.6 bits (122), Expect = 3.580e-6
Identity = 25/83 (30.12%), Postives = 44/83 (53.01%), Query Frame = 1 
Query:   10 VQGAESPGEAWSKLVQHYHASGLKERRCLTVDFYTMKMELGEHPRKFLLRVDQMVKELERVERPVDPKDVDIVILSGLTPQYD 258
            ++ A+S  EAW  L + Y   GL  R  L    ++ K+        +L ++ ++  +L  +E P+D + V +++LSGLT  YD
Sbjct:   43 IRTAKSAHEAWKILQKAYEGRGLSRRLGLLRSLFSTKLSENSSMEVYLNKIKEISHQLNEIESPLDDEFVAVIMLSGLTDDYD 125
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BLAST of mRNA_H-elongata_contig153859.3556.1 vs. uniprot
Match: UPI00103F0D66 (uncharacterized protein LOC114362197 n=1 Tax=Ostrinia furnacalis TaxID=93504 RepID=UPI00103F0D66)

HSP 1 Score: 51.2 bits (121), Expect = 8.190e-6
Identity = 26/83 (31.33%), Postives = 44/83 (53.01%), Query Frame = 1 
Query:   10 VQGAESPGEAWSKLVQHYHASGLKERRCLTVDFYTMKMELGEHPRKFLLRVDQMVKELERVERPVDPKDVDIVILSGLTPQYD 258
            ++ A+S  EAW+ L + Y   GL  R  L    +  K+        +L ++ ++  +L  +E P+D + V ++ILSGLT  YD
Sbjct:   71 IRTAKSAHEAWTILQKTYEGRGLSRRLGLLRSLFNTKLSECSSMEVYLNKIKEISHQLSEIESPLDDELVAVIILSGLTDDYD 153
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BLAST of mRNA_H-elongata_contig153859.3556.1 vs. uniprot
Match: A0A2H1WMK4_SPOFR (SFRICE_021333 n=1 Tax=Spodoptera frugiperda TaxID=7108 RepID=A0A2H1WMK4_SPOFR)

HSP 1 Score: 51.2 bits (121), Expect = 1.730e-5
Identity = 25/83 (30.12%), Postives = 43/83 (51.81%), Query Frame = 1 
Query:   10 VQGAESPGEAWSKLVQHYHASGLKERRCLTVDFYTMKMELGEHPRKFLLRVDQMVKELERVERPVDPKDVDIVILSGLTPQYD 258
            ++ A+S  EAW  L + Y   GL  R  L    +  K+        +L ++ ++  +L  +E P+D + V +++LSGLT  YD
Sbjct:   74 IRTAKSAHEAWKILQKAYEGRGLSRRLGLLRSLFNTKLSENSSMEVYLNKIKEISHQLNEIESPLDDEFVAVIMLSGLTDDYD 156
[Close]
BLAST of mRNA_H-elongata_contig153859.3556.1 vs. uniprot
Match: UPI00103FEA55 (uncharacterized protein LOC114361313 n=2 Tax=Ostrinia furnacalis TaxID=93504 RepID=UPI00103FEA55)

HSP 1 Score: 51.2 bits (121), Expect = 1.860e-5
Identity = 26/83 (31.33%), Postives = 44/83 (53.01%), Query Frame = 1 
Query:   10 VQGAESPGEAWSKLVQHYHASGLKERRCLTVDFYTMKMELGEHPRKFLLRVDQMVKELERVERPVDPKDVDIVILSGLTPQYD 258
            ++ A+S  EAW+ L + Y   GL  R  L    +  K+        +L ++ ++  +L  +E P+D + V ++ILSGLT  YD
Sbjct:   71 IRTAKSAHEAWTILQKTYEGRGLSRRLGLLRSLFNTKLSECSSMEVYLNKIKEISHQLSEIESPLDDELVAVIILSGLTDDYD 153
[Close]
BLAST of mRNA_H-elongata_contig153859.3556.1 vs. uniprot
Match: UPI001F8D56D1 (Uncharacterized protein n=1 Tax=Spodoptera exigua TaxID=7107 RepID=UPI001F8D56D1)

HSP 1 Score: 49.7 bits (117), Expect = 6.880e-5
Identity = 24/83 (28.92%), Postives = 44/83 (53.01%), Query Frame = 1 
Query:   10 VQGAESPGEAWSKLVQHYHASGLKERRCLTVDFYTMKMELGEHPRKFLLRVDQMVKELERVERPVDPKDVDIVILSGLTPQYD 258
            ++ A+S  EAW+ L + Y   GL  +  L    +  K+        +L ++ ++  +L  +E P+D + + ++ILSGLT  YD
Sbjct:   69 IRTAKSAYEAWNNLKKTYEGKGLCRKLGLLRSLFGTKLADSNSMDGYLNKIKEVAHQLSEIESPLDDEFIAVIILSGLTSDYD 151
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig153859.3556.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A2H1VB05_SPOFR3.580e-630.12SFRICE_041671 (Fragment) n=1 Tax=Spodoptera frugip... [more]
UPI00103F0D668.190e-631.33uncharacterized protein LOC114362197 n=1 Tax=Ostri... [more]
A0A2H1WMK4_SPOFR1.730e-530.12SFRICE_021333 n=1 Tax=Spodoptera frugiperda TaxID=... [more]
UPI00103FEA551.860e-531.33uncharacterized protein LOC114361313 n=2 Tax=Ostri... [more]
UPI001F8D56D16.880e-528.92Uncharacterized protein n=1 Tax=Spodoptera exigua ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig153859contigH-elongata_contig153859:1193..1462 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size270
Cds size270
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929909.7076945-CDS-H-elongata_contig153859:1192..14621622929909.7076945-CDS-H-elongata_contig153859:1192..1462Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig153859 1193..1462 -
1691679204.749311-CDS-H-elongata_contig153859:1192..14621691679204.749311-CDS-H-elongata_contig153859:1192..1462Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig153859 1193..1462 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig153859.3556.1prot_H-elongata_contig153859.3556.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig153859 1193..1462 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig153859.3556.1

>prot_H-elongata_contig153859.3556.1 ID=prot_H-elongata_contig153859.3556.1|Name=mRNA_H-elongata_contig153859.3556.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=90bp
FDIVQGAESPGEAWSKLVQHYHASGLKERRCLTVDFYTMKMELGEHPRKF
LLRVDQMVKELERVERPVDPKDVDIVILSGLTPQYDAEV*
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mRNA from alignment at H-elongata_contig153859:1193..1462-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig153859.3556.1 ID=mRNA_H-elongata_contig153859.3556.1|Name=mRNA_H-elongata_contig153859.3556.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=270bp|location=Sequence derived from alignment at H-elongata_contig153859:1193..1462- (Himanthalia elongata Himel1 dioecious)
TTCGACATCGTCCAAGGAGCTGAGTCGCCCGGGGAAGCGTGGTCAAAACT
CGTGCAGCACTACCACGCCAGCGGCCTCAAGGAACGACGCTGCCTCACTG
TGGACTTCTATACGATGAAGATGGAACTCGGCGAGCATCCGCGCAAATTT
TTGCTGCGGGTGGACCAGATGGTCAAGGAACTGGAAAGGGTAGAGCGACC
GGTGGACCCGAAGGACGTGGACATCGTAATTCTGAGCGGCCTCACCCCCC
AGTACGACGCCGAGGTTTGA
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Coding sequence (CDS) from alignment at H-elongata_contig153859:1193..1462-

>mRNA_H-elongata_contig153859.3556.1 ID=mRNA_H-elongata_contig153859.3556.1|Name=mRNA_H-elongata_contig153859.3556.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=540bp|location=Sequence derived from alignment at H-elongata_contig153859:1193..1462- (Himanthalia elongata Himel1 dioecious)
TTCGACATCGTCCAAGGAGCTGAGTCGCCCGGGGAAGCGTGGTCAAAACT
CGTGCAGCACTACCACGCCAGCGGCCTCAAGGAACGACGCTGCCTCACTG
TGGACTTCTATACGATGAAGATGGAACTCGGCGAGCATCCGCGCAAATTT
TTGCTGCGGGTGGACCAGATGGTCAAGGAACTGGAAAGGGTAGAGCGACC
GGTGGACCCGAAGGACGTGGACATCGTAATTCTGAGCGGCCTCACCCCCC
AGTACGACGCCGAGGTTTGATTCGACATCGTCCAAGGAGCTGAGTCGCCC
GGGGAAGCGTGGTCAAAACTCGTGCAGCACTACCACGCCAGCGGCCTCAA
GGAACGACGCTGCCTCACTGTGGACTTCTATACGATGAAGATGGAACTCG
GCGAGCATCCGCGCAAATTTTTGCTGCGGGTGGACCAGATGGTCAAGGAA
CTGGAAAGGGTAGAGCGACCGGTGGACCCGAAGGACGTGGACATCGTAAT
TCTGAGCGGCCTCACCCCCCAGTACGACGCCGAGGTTTGA
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