mRNA_H-elongata_contig153815.3552.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig153815.3552.1
Unique NamemRNA_H-elongata_contig153815.3552.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig153815.3552.1 vs. uniprot
Match: D8LHC6_ECTSI (Allergen V5/Tpx-1 related n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LHC6_ECTSI)

HSP 1 Score: 236 bits (603), Expect = 1.300e-69
Identity = 115/142 (80.99%), Postives = 126/142 (88.73%), Query Frame = 1 
Query:    1 QVAGEVCTYFDATASGIVAQLVVSDGERSRHNRKALLAKHFTVCGVALGAHPTVGAACVITLAAGYGPRPLSSAADVVCAPRETPSAEFRQVLESVPVPQITDEVAKCLKVGMEVQLQYAPGKVKVTFVQASGARKSMSCSW 426
            QVAGEVCTYFDATA GIVAQL+VSDGERSRHNRKALLA HF VCG+A+G HPTVGAACVITLA GYGPRPLS +ADVVC     PSAEFR+VLES+PVPQIT+EV+KC++VGMEVQLQY PG +K TFVQASGARKSM C W
Sbjct: 1071 QVAGEVCTYFDATAEGIVAQLLVSDGERSRHNRKALLAAHFKVCGIAIGTHPTVGAACVITLAGGYGPRPLSRSADVVCEAGSAPSAEFREVLESIPVPQITEEVSKCVEVGMEVQLQYTPGSIKCTFVQASGARKSMGCKW 1212
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BLAST of mRNA_H-elongata_contig153815.3552.1 vs. uniprot
Match: A0A836CD41_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CD41_9STRA)

HSP 1 Score: 142 bits (358), Expect = 1.640e-36
Identity = 73/159 (45.91%), Postives = 101/159 (63.52%), Query Frame = 1 
Query:    1 QVAGEVCTYFDATASGIVAQLVVSDGERSRHN-----------------RKALLAKHFTVCGVALGAHPTVGAACVITLAAGYGPRPLSSAADVVCAPRETPSAEFRQVLESVPVPQITDEVAKCLKVGMEVQLQYAPGKVKVTFVQASGARKSMSCSW 426
            QVAGEV + ++++A GIV Q++++DGER+R N                 RK+++ +HF VCGVA   HP+VG   V+TLA G+GP+ L   A V   P E PS EF +VLES+PVPQ+TDEV K +  G+ V+L Y PG+VK+T  Q  G+   +SC W
Sbjct: 1292 QVAGEVISVYESSAVGIVCQMLINDGERTRQNEAKHEKIXXXXXXXXXXRKSIIGQHFKVCGVATAPHPSVGTVGVVTLAGGWGPKSLEREALVSVEPGEDPSPEFERVLESIPVPQVTDEVRKAIAAGLAVELDYKPGEVKLTVKQRDGSASLLSCQW 1450
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BLAST of mRNA_H-elongata_contig153815.3552.1 vs. uniprot
Match: A0A7S2SPY0_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SPY0_9STRA)

HSP 1 Score: 118 bits (296), Expect = 3.570e-28
Identity = 61/146 (41.78%), Postives = 91/146 (62.33%), Query Frame = 1 
Query:    1 QVAGEVCTYFDATASGIVAQLVVSDGERSRHNRKALLAKHFTVCGVALGAHPTVGAACVITLAAGYGPRPLSSA--ADVVCAPRETPSAEFRQVLESVPVPQITDEVAKCLKVGMEVQLQYAPG-KVKVTFVQASGARKSMSCSWT 429
            ++AGEV  Y + +A+  V QL++ DGE+ RHNR A+L+  F VCG+A   HP++ +  V+ LA G+GP+PL+ A  A +  A        F+ VL+S+PVPQ+ ++VA  L+ G EV L Y PG     TF Q SG   +++C W+
Sbjct:  872 EIAGEVIAYREGSAAAFVEQLIICDGEQRRHNRTAVLSPEFRVCGIAASEHPSLESVVVVPLAGGFGPKPLAEATVASLSAASTAEEQETFQAVLDSIPVPQLHEQVAAALEDGAEVTLDYKPGGTATATFKQPSGEANAVACDWS 1017
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BLAST of mRNA_H-elongata_contig153815.3552.1 vs. uniprot
Match: A0A7S2CHX3_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2CHX3_9STRA)

HSP 1 Score: 97.8 bits (242), Expect = 2.920e-22
Identity = 54/145 (37.24%), Postives = 81/145 (55.86%), Query Frame = 1 
Query:    7 AGEVCTY--FDATASGIVAQLVVSDGERSRHNRKALLAKHFTVCGVALGAHPTVGAACVITLAAGYGP---RPLSSAADVVCAPRETPSAEFRQVLESVPVPQITDEVAKCLKVGMEVQLQYAPGKVKVTFVQASGARKSMSCSW 426
            AGEV  Y    A+A  ++  ++VSDGE+SRH+R+A+L   F V G+A G HPT  +  V+ LA G+G      L   A+  CA  E  S +F Q+L+SVP+  + D++   L  G  + L++ PG + V    A GA++     W
Sbjct:   83 AGEVIGYSVHPASAEELILNIIVSDGEKSRHDRRAILNPKFKVAGIATGPHPTYSSTAVVCLAGGFGDFTLGDLGEEAEATCAGTEPMSPQFIQILDSVPIEDLVDQLKSELAAGSTLTLKFTPGCLHVNATDARGAKEEYDVEW 227
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BLAST of mRNA_H-elongata_contig153815.3552.1 vs. uniprot
Match: A0A7S2G3N3_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2G3N3_9STRA)

HSP 1 Score: 86.3 bits (212), Expect = 6.630e-17
Identity = 47/136 (34.56%), Postives = 66/136 (48.53%), Query Frame = 1 
Query:   19 CTYFDATASGIVAQLVVSDGERSRHNRKALLAKHFTVCGVALGAHPTVGAACVITLAAGYGPRPLSSAADVVCAPRETPSAEFRQVLESVPVPQITDEVAKCLKVGMEVQLQYAPGKVKVTFVQASGARKSMSCSW 426
            CT+      GIVA+L + DG+++    + LL     VCGV  G HPT+  AC ++LA G+GP+P+     V C     P   F +VL SVP P   DE+   +  G +V L Y P  V      + G     +  W
Sbjct:  432 CTHT-RVPEGIVAELCLCDGDKTHRMLRDLLHPDLKVCGVGCGPHPTMEYACCVSLAGGWGPKPVDKRRIVFCKGGSEPDDRFMEVLNSVPEPDFIDELIDQISQGSDVHLNYTPSGVDAKITDSEGEVTEYNLEW 566
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BLAST of mRNA_H-elongata_contig153815.3552.1 vs. uniprot
Match: A0A7S2B9N3_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2B9N3_9STRA)

HSP 1 Score: 64.7 bits (156), Expect = 9.110e-11
Identity = 36/103 (34.95%), Postives = 49/103 (47.57%), Query Frame = 1 
Query:  121 FTVCGVALGAHPTVGAACVITLAAGYGPRPLSSAADVVCAPRETPSAEFRQVLESVPVPQITDEVAKCLKVGMEVQLQYAPGK-VKVTFVQASGARKSMSCSW 426
            F V GV  G HPT+  AC +TLA G+GP+P+     V+CA    P   F +VL SVP      E+   ++ G  V L Y P   V+       G+    +  W
Sbjct:    5 FRVAGVGCGPHPTMTYACAVTLAGGFGPKPVDKRRIVMCAAGGEPDERFMEVLRSVPDDDFQQEILDQIEGGCSVHLSYDPNAGVEAKLTDEDGSVTEYNMEW 107
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig153815.3552.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
D8LHC6_ECTSI1.300e-6980.99Allergen V5/Tpx-1 related n=2 Tax=Ectocarpus TaxID... [more]
A0A836CD41_9STRA1.640e-3645.91Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S2SPY0_9STRA3.570e-2841.78Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S2CHX3_9STRA2.920e-2237.24Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A7S2G3N3_9STRA6.630e-1734.56Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7S2B9N3_9STRA9.110e-1134.95Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig153815contigH-elongata_contig153815:635..1453 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score238.0
Seed ortholog evalue2.7e-60
Seed eggNOG ortholog2880.D8LHC6
KEGG koko:K10366
KEGG Pathwayko05410,ko05412,ko05414,ko05416,map05410,map05412,map05414,map05416
GOsGO:0000910,GO:0000912,GO:0000915,GO:0005575,GO:0006996,GO:0007010,GO:0007049,GO:0007275,GO:0007349,GO:0008150,GO:0009653,GO:0009987,GO:0016020,GO:0016043,GO:0019898,GO:0022402,GO:0022607,GO:0030029,GO:0030036,GO:0030865,GO:0030866,GO:0031032,GO:0032501,GO:0032502,GO:0032506,GO:0044085,GO:0044425,GO:0044837,GO:0048646,GO:0048856,GO:0051301,GO:0061640,GO:0071840
EggNOG free text desc.olfactory nerve structural organization
EggNOG OGsCOG5069@1,KOG4286@2759
COG Functional cat.Z
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04812
Hectar predicted targeting categoryother localisation
Exons2
Model size432
Cds size432
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929909.4634378-CDS-H-elongata_contig153815:634..9461622929909.4634378-CDS-H-elongata_contig153815:634..946Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig153815 635..946 +
1691679204.6184914-CDS-H-elongata_contig153815:634..9461691679204.6184914-CDS-H-elongata_contig153815:634..946Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig153815 635..946 +
1622929909.4752474-CDS-H-elongata_contig153815:1333..14531622929909.4752474-CDS-H-elongata_contig153815:1333..1453Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig153815 1334..1453 +
1691679204.6295617-CDS-H-elongata_contig153815:1333..14531691679204.6295617-CDS-H-elongata_contig153815:1333..1453Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig153815 1334..1453 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig153815.3552.1prot_H-elongata_contig153815.3552.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig153815 635..1453 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig153815.3552.1

>prot_H-elongata_contig153815.3552.1 ID=prot_H-elongata_contig153815.3552.1|Name=mRNA_H-elongata_contig153815.3552.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=144bp
QVAGEVCTYFDATASGIVAQLVVSDGERSRHNRKALLAKHFTVCGVALGA
HPTVGAACVITLAAGYGPRPLSSAADVVCAPRETPSAEFRQVLESVPVPQ
ITDEVAKCLKVGMEVQLQYAPGKVKVTFVQASGARKSMSCSWT*
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mRNA from alignment at H-elongata_contig153815:635..1453+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig153815.3552.1 ID=mRNA_H-elongata_contig153815.3552.1|Name=mRNA_H-elongata_contig153815.3552.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=819bp|location=Sequence derived from alignment at H-elongata_contig153815:635..1453+ (Himanthalia elongata Himel1 dioecious)
CAGGTGGCTGGAGAAGTCTGCACCTACTTCGACGCGACCGCCTCGGGCAT
CGTGGCGCAGTTAGTGGTTTCCGACGGCGAGCGCTCCCGGCACAACCGTA
AGGCACTCCTCGCCAAGCACTTCACGGTCTGCGGCGTGGCGCTCGGCGCG
CATCCTACGGTCGGCGCTGCGTGCGTTATCACCCTGGCGGCAGGCTACGG
TCCGCGTCCGCTGTCGTCCGCAGCGGACGTGGTTTGCGCGCCGAGAGAAA
CACCTTCCGCGGAGTTCCGTCAGGTACTGGAGAGCGTCCCCGTGCCGCAG
ATCACGGATGAGGTGAGGCGCGAGCAACAGAGGACGCAGACGGTAGTGTG
TGGGAGGATGGGTAGTGTAGGTGGCAGTGATGCATTCTATATTTAGCGGT
GGAAGCTTTAGTTTGTCAATTATCTCCCCCTCTCTCTAGGATGAAGGAAT
AATGCCTCCTTGTCAATTATCTCTCTCCCTCTCTCTAGGATGTATGCATT
CACGCCTCTTTGTCAATTCTCTCTTTCCCTCTCTCTAGGATGAAGGAACT
AACGCCTCTTTGTCAATTATCCTCGTCGCGTCGTATACGTCTTGTCTGTT
CGTTGCTGACAGTAGATTAACGCATATTTCGCCGATTTTTTTCGTGCACT
CGTTTGTTTCTGTGTGTGCTTTCCCTGCCGCTCCTAACCGCCTTCCAAGG
TGGCCAAGTGTCTCAAGGTTGGCATGGAAGTGCAGCTGCAATACGCTCCA
GGAAAGGTGAAGGTCACGTTTGTGCAGGCGTCTGGGGCGCGCAAGAGCAT
GAGCTGCAGCTGGACTTGA
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Coding sequence (CDS) from alignment at H-elongata_contig153815:635..1453+

>mRNA_H-elongata_contig153815.3552.1 ID=mRNA_H-elongata_contig153815.3552.1|Name=mRNA_H-elongata_contig153815.3552.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=864bp|location=Sequence derived from alignment at H-elongata_contig153815:635..1453+ (Himanthalia elongata Himel1 dioecious)
CAGGTGGCTGGAGAAGTCTGCACCTACTTCGACGCGACCGCCTCGGGCAT
CGTGGCGCAGTTAGTGGTTTCCGACGGCGAGCGCTCCCGGCACAACCGTA
AGGCACTCCTCGCCAAGCACTTCACGGTCTGCGGCGTGGCGCTCGGCGCG
CATCCTACGGTCGGCGCTGCGTGCGTTATCACCCTGGCGGCAGGCTACGG
TCCGCGTCCGCTGTCGTCCGCAGCGGACGTGGTTTGCGCGCCGAGAGAAA
CACCTTCCGCGGAGTTCCGTCAGGTACTGGAGAGCGTCCCCGTGCCGCAG
ATCACGGATGAGCAGGTGGCTGGAGAAGTCTGCACCTACTTCGACGCGAC
CGCCTCGGGCATCGTGGCGCAGTTAGTGGTTTCCGACGGCGAGCGCTCCC
GGCACAACCGTAAGGCACTCCTCGCCAAGCACTTCACGGTCTGCGGCGTG
GCGCTCGGCGCGCATCCTACGGTCGGCGCTGCGTGCGTTATCACCCTGGC
GGCAGGCTACGGTCCGCGTCCGCTGTCGTCCGCAGCGGACGTGGTTTGCG
CGCCGAGAGAAACACCTTCCGCGGAGTTCCGTCAGGTACTGGAGAGCGTC
CCCGTGCCGCAGATCACGGATGAGGTGGCCAAGTGTCTCAAGGTTGGCAT
GGAAGTGCAGCTGCAATACGCTCCAGGAAAGGTGAAGGTCACGTTTGTGC
AGGCGTCTGGGGCGCGCAAGAGCATGAGCTGCAGCTGGACTTGAGTGGCC
AAGTGTCTCAAGGTTGGCATGGAAGTGCAGCTGCAATACGCTCCAGGAAA
GGTGAAGGTCACGTTTGTGCAGGCGTCTGGGGCGCGCAAGAGCATGAGCT
GCAGCTGGACTTGA
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