mRNA_H-elongata_contig153791.3551.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig153791.3551.1
Unique NamemRNA_H-elongata_contig153791.3551.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig153791.3551.1 vs. uniprot
Match: D8LHL4_ECTSI (DUF3342 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHL4_ECTSI)

HSP 1 Score: 163 bits (413), Expect = 1.350e-44
Identity = 88/115 (76.52%), Postives = 99/115 (86.09%), Query Frame = 1
Query:    1 QVPLVVSILISSDFLQMWRLVDDCLAFVGEHLTEIVKLPIDLSCLSDKIVLRLAKACAKGMVTLEQLAVAKDRKDKLLSRVHKKRIELDFRDRASDGDNVIHCCRHFTHMFSEKV 345
            +VPL VSILISSDFLQM RLV +CL FVGEHLTEIVKLPIDLSCL+DK+VL+LAK     +VTL+QLAVAKDRKDKLLSRVHKKRIE+DFRDR+   DN IHCCR+   +FSEKV
Sbjct:  403 EVPLAVSILISSDFLQMQRLVAECLGFVGEHLTEIVKLPIDLSCLNDKMVLQLAK-----IVTLDQLAVAKDRKDKLLSRVHKKRIEIDFRDRSPHSDNAIHCCRYCAGLFSEKV 512          
BLAST of mRNA_H-elongata_contig153791.3551.1 vs. uniprot
Match: A0A6H5K1Y3_9PHAE (DUF3342 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1Y3_9PHAE)

HSP 1 Score: 157 bits (397), Expect = 4.530e-44
Identity = 85/114 (74.56%), Postives = 96/114 (84.21%), Query Frame = 1
Query:    4 VPLVVSILISSDFLQMWRLVDDCLAFVGEHLTEIVKLPIDLSCLSDKIVLRLAKACAKGMVTLEQLAVAKDRKDKLLSRVHKKRIELDFRDRASDGDNVIHCCRHFTHMFSEKV 345
            VPL VSILISSDFLQM RLV +CL FVGEHLTEIVKLPIDLSCLSDK+VL+LAK     ++TL+QLAVAKDRKDKLLSRVHKKRIE+DF DR+   D+ +HCCRH   +FSEK 
Sbjct:  320 VPLAVSILISSDFLQMQRLVAECLGFVGEHLTEIVKLPIDLSCLSDKMVLQLAK-----IMTLDQLAVAKDRKDKLLSRVHKKRIEIDFCDRSPHSDSAVHCCRHCGGLFSEKA 428          
BLAST of mRNA_H-elongata_contig153791.3551.1 vs. uniprot
Match: A0A835YQX4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YQX4_9STRA)

HSP 1 Score: 110 bits (275), Expect = 7.920e-26
Identity = 58/110 (52.73%), Postives = 85/110 (77.27%), Query Frame = 1
Query:   13 VVSILISSDFLQMWRLVDDCLAFVGEHLTEIVKLPIDLSCLSDKIVLRLAKACAKGMVTLEQLAVAKDRKDKLLSRVHKKRIELDFRDRASDGDNVIHCCRHFTHMFSEK 342
            VVS+LISSDFL+M  LV +CLAFV  + +E+V+LPIDL+CL+D +V  +A+     ++TL +LA A+DR+DKLLSRV KKR+E+++RDR+  GD  + CCRH   +++E+
Sbjct:  233 VVSVLISSDFLKMAALVAECLAFVARNFSEVVRLPIDLACLTDAMVGAVAR-----LMTLRELAAARDRRDKLLSRVFKKRLEVEYRDRS--GDRAVRCCRHCAALYTER 335          
BLAST of mRNA_H-elongata_contig153791.3551.1 vs. uniprot
Match: A0A7S1XVF4_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XVF4_9STRA)

HSP 1 Score: 93.2 bits (230), Expect = 9.540e-20
Identity = 49/110 (44.55%), Postives = 76/110 (69.09%), Query Frame = 1
Query:   13 VVSILISSDFLQMWRLVDDCLAFVGEHLTEIVKLPIDLSCLSDKIVLRLAKACAKGMVTLEQLAVAKDRKDKLLSRVHKKRIELDFRDRASDGDNVIHCCRHFTHMFSEK 342
            V+SILISSDFLQM  L + CL ++  HL+E++++PID+ C+ D++++RLA      +   E LA  +D++DKLLS+++KKRIE+DFR+R     + I  CR+    F+ K
Sbjct:  387 VISILISSDFLQMDPLTELCLKYITAHLSEVIRVPIDMGCIKDELLVRLA-----ALTEPEVLAYTRDKRDKLLSKLYKKRIEMDFRERQKGVPHSISACRYCLQPFATK 491          
BLAST of mRNA_H-elongata_contig153791.3551.1 vs. uniprot
Match: A0A7S4DEU4_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DEU4_HETAK)

HSP 1 Score: 85.1 bits (209), Expect = 4.580e-19
Identity = 47/84 (55.95%), Postives = 63/84 (75.00%), Query Frame = 1
Query:   16 VSILISSDFLQMWRLVDDCLAFVGEHLTEIVKLPIDLSCLSDKIVLRLAKACAKGMVTLEQLAVAKDRKDKLLSRVHKKRIELD 267
            +SILISSDFL M +LV  C+ FV  HL EI+KLP+DLSCL+D ++L +AK       T + LA  KD+KDKLLS+++KKR+E+D
Sbjct:   39 ISILISSDFLLMEKLVTHCVDFVSRHLNEILKLPLDLSCLNDNLILAIAKKA-----TPQILAEVKDKKDKLLSKLYKKRLEID 117          
BLAST of mRNA_H-elongata_contig153791.3551.1 vs. uniprot
Match: A0A7S2SHR3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SHR3_9STRA)

HSP 1 Score: 89.7 bits (221), Expect = 1.540e-18
Identity = 53/112 (47.32%), Postives = 76/112 (67.86%), Query Frame = 1
Query:   13 VVSILISSDFLQMWRLVDDCLAFVGEHLTEIVKLPIDLSCLSDKIVLRLAKACAKGMVTLEQLAVAKDRKDKLLSRVHKKRIELDFRDRASD-----GDNVIHCCRHFTHMF 333
            VVSILISSDFL+M +LV  CL ++   L EIVK+P+DLSC+S+K+V RL++     +V    L   KD+KDKL+S+++K+R+E+DFR+   D     G + I CCR    +F
Sbjct:  245 VVSILISSDFLEMEKLVTHCLRYMSRRLPEIVKMPLDLSCISEKLVQRLSE-----LVDASLLVGLKDKKDKLMSKLYKRRLEIDFRNPPLDSKKRQGYSKICCCRWCGRLF 351          
BLAST of mRNA_H-elongata_contig153791.3551.1 vs. uniprot
Match: A0A7S3ZMG3_9STRA (Hypothetical protein n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZMG3_9STRA)

HSP 1 Score: 86.3 bits (212), Expect = 2.480e-17
Identity = 50/107 (46.73%), Postives = 69/107 (64.49%), Query Frame = 1
Query:   13 VVSILISSDFLQMWRLVDDCLAFVGEHLTEIVKLPIDLSCLSDKIVLRLAKACAKGMVTLEQLAVAKDRKDKLLSRVHKKRIELDFRDRASDGDNVIHCCRHFTHMF 333
            VVSILISS+FL+M  LV+ CL F+  H+ EI+++PIDL+C+SD +V RLA  C       E L    D KDKLL +++K+R+ELDFR  +      I  CRH   ++
Sbjct:  195 VVSILISSEFLEMANLVEHCLKFMAAHVGEILEMPIDLACVSDALVQRLAALCPA-----EVLCDLTDAKDKLLPKLYKRRLELDFRHSSKANKRDILKCRHCDRLY 296          
BLAST of mRNA_H-elongata_contig153791.3551.1 vs. uniprot
Match: A0A1R2CHG3_9CILI (Uncharacterized protein n=1 Tax=Stentor coeruleus TaxID=5963 RepID=A0A1R2CHG3_9CILI)

HSP 1 Score: 82.8 bits (203), Expect = 3.810e-16
Identity = 49/108 (45.37%), Postives = 70/108 (64.81%), Query Frame = 1
Query:    1 QVPLVVSILISSDFLQMWRLVDDCLAFVGEHLTEIVKLPIDLSCLSDKIVLRLAKACAKGMVTLEQLAVAKDRKDKLLSRVHKKRIELDFRDRASDGDNVIHCCRHFT 324
            ++P V+SILISSDFLQM  LV  CL F  ++L E+VKLPID+SCLS  ++ +LAK      +  E L   KDRKDKLLS+++ K++E    D  +     ++C + +T
Sbjct:  151 EMPKVISILISSDFLQMNDLVKQCLEFTAKNLEEVVKLPIDMSCLSQNLLKQLAK-----YINPELLDEVKDRKDKLLSKIYMKKLEELLEDENNTLSRCVYCNKLYT 253          
BLAST of mRNA_H-elongata_contig153791.3551.1 vs. uniprot
Match: A0A813K7K7_POLGL (Hypothetical protein n=1 Tax=Polarella glacialis TaxID=89957 RepID=A0A813K7K7_POLGL)

HSP 1 Score: 78.6 bits (192), Expect = 3.100e-15
Identity = 47/109 (43.12%), Postives = 70/109 (64.22%), Query Frame = 1
Query:   13 VVSILISSDFLQMWRLVDDCLAFVGEHLTEIVKLPIDLSCLSDKIVLRLAKACAKGMVTLEQLAVAKDRKDKLLSRVHKKRIELDFRDRASDGDNVIHCCRHFTHMFSE 339
            VVS+LISSDFLQM +LVD CL  +   + ++VKLP+DL+CL ++IV RLA      M   ++L   +D +DKLLSR++  ++E    +  +   NV++CC     +FSE
Sbjct:  142 VVSMLISSDFLQMHQLVDKCLTVLHRSINDVVKLPLDLACLPNRIVARLA-----AMFRDDELEDVQDSRDKLLSRLYAHKLE----ELLTQNGNVLYCCTRCQCLFSE 241          
BLAST of mRNA_H-elongata_contig153791.3551.1 vs. uniprot
Match: A0A1R2ARR5_9CILI (Uncharacterized protein n=2 Tax=Stentor coeruleus TaxID=5963 RepID=A0A1R2ARR5_9CILI)

HSP 1 Score: 80.1 bits (196), Expect = 3.350e-15
Identity = 47/104 (45.19%), Postives = 69/104 (66.35%), Query Frame = 1
Query:   13 VVSILISSDFLQMWRLVDDCLAFVGEHLTEIVKLPIDLSCLSDKIVLRLAKACAKGMVTLEQLAVAKDRKDKLLSRVHKKRIELDFRDRASDGDNVIHCCRHFT 324
            V+SILISS+FLQM  LV  CL FV ++L E+VKLPID+SCL+  ++ +L+K     M+  E L   KDRKDKL+S+V+ K++E    D  +     ++C + +T
Sbjct:  151 VISILISSEFLQMQELVTQCLEFVAKNLEEVVKLPIDMSCLNQNLLKQLSK-----MIVPEILDDIKDRKDKLVSKVYMKKLEEFLEDENNMFSRCVYCNKLYT 249          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig153791.3551.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LHL4_ECTSI1.350e-4476.52DUF3342 domain-containing protein n=1 Tax=Ectocarp... [more]
A0A6H5K1Y3_9PHAE4.530e-4474.56DUF3342 domain-containing protein n=1 Tax=Ectocarp... [more]
A0A835YQX4_9STRA7.920e-2652.73Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S1XVF4_9STRA9.540e-2044.55Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A7S4DEU4_HETAK4.580e-1955.95Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S2SHR3_9STRA1.540e-1847.32Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
A0A7S3ZMG3_9STRA2.480e-1746.73Hypothetical protein n=2 Tax=Pelagomonas calceolat... [more]
A0A1R2CHG3_9CILI3.810e-1645.37Uncharacterized protein n=1 Tax=Stentor coeruleus ... [more]
A0A813K7K7_POLGL3.100e-1543.12Hypothetical protein n=1 Tax=Polarella glacialis T... [more]
A0A1R2ARR5_9CILI3.350e-1545.19Uncharacterized protein n=2 Tax=Stentor coeruleus ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig153791contigH-elongata_contig153791:49..1253 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score166.8
Seed ortholog evalue6e-39
Seed eggNOG ortholog2880.D8LHL4
Preferred nameKIAA1841
EggNOG free text desc.Domain of unknown function (DUF3342)
EggNOG OGs28J1Y@1,2QRE4@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size345
Cds size345
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929909.408584-CDS-H-elongata_contig153791:48..2131622929909.408584-CDS-H-elongata_contig153791:48..213Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig153791 49..213 -
1691679204.5970726-CDS-H-elongata_contig153791:48..2131691679204.5970726-CDS-H-elongata_contig153791:48..213Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig153791 49..213 -
1622929909.4185903-CDS-H-elongata_contig153791:1073..12531622929909.4185903-CDS-H-elongata_contig153791:1073..1253Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig153791 1074..1253 -
1691679204.6094065-CDS-H-elongata_contig153791:1073..12531691679204.6094065-CDS-H-elongata_contig153791:1073..1253Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig153791 1074..1253 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig153791.3551.1prot_H-elongata_contig153791.3551.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig153791 49..1253 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig153791.3551.1

>prot_H-elongata_contig153791.3551.1 ID=prot_H-elongata_contig153791.3551.1|Name=mRNA_H-elongata_contig153791.3551.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=115bp
QVPLVVSILISSDFLQMWRLVDDCLAFVGEHLTEIVKLPIDLSCLSDKIV
LRLAKACAKGMVTLEQLAVAKDRKDKLLSRVHKKRIELDFRDRASDGDNV
IHCCRHFTHMFSEKV
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mRNA from alignment at H-elongata_contig153791:49..1253-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig153791.3551.1 ID=mRNA_H-elongata_contig153791.3551.1|Name=mRNA_H-elongata_contig153791.3551.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1205bp|location=Sequence derived from alignment at H-elongata_contig153791:49..1253- (Himanthalia elongata Himel1 dioecious)
CAGGTGCCCCTCGTAGTGTCGATCCTCATCTCCTCGGATTTCCTGCAGAT GTGGAGGCTTGTCGACGACTGCCTCGCGTTCGTCGGCGAGCACCTGACGG AGATCGTGAAGCTTCCGATCGACTTGTCCTGCCTCAGCGACAAGATCGTT CTTCGTCTTGCCAAGGCGTGTGCGAAAGGCGTAGGCGTCGCCCTGAGCGA CGGCGGTATACCGATTGACGGAAGCGCCAGTCCGGTGGTGGAGTTCCATC TCTTCGAAAAACCGCCAGATGTTGTTTGTTGAGGAAAATTGCTTCGTGTG TATGTGTATCATGGGAGAAATCACGGCAAGCAATGGACGCCGGGTTTCAA TGACTCCGGGCGGCGGGATGGGGGGAGGTACTCAAGTTTTGCATGCCTTA GGGCGGGTATTAACGGGAAACAAAAATTAAAATTTCCAGCCGTTTTAAAT TTAAATCGAGCTCTGATTGGTCAAAAGCTAAATAACGCCTAGCCTTCGTC CAATCAGAGCCCGATTTTAATTCCAATCAGCTGGATTTTTTTTTTTTTTA ACCCCCATAATATCCGCCCTTAGGCCGGGTCTTATCGGAATACAAAAATT GAAATTTCCAGCCGATTTAAATTAAAATCGGGCTTTGATTGGTCGACAGC TAAATAACGTCTAGCCTTCATCCAATAAGAGCCCGATTTAAATTTAAATC GGCTGGAATTTAAACTTTTGTAACCCCCTTAATATCCGACCTTAGCTGTT GGGCCATTCACCACGCATCCTCGGGAGGGAGGACGGGGTCCATCTGGGGG GGGGGGATGGGGGGTTTCCTAGAGGATTTTCGGAAAGCTAAACAACCCGC GAGCGCAGTGTAGCGGCTAGCTATTTCAATACACCTCAAGAAAGGAATTC ATTCGCCTTGACCCTTCAGCTCGCATTGTGGGAAGAAGAAAAAAACGAGA GAAATAAAATGATGAAAAATAATACAGCGCGAACAAAACCAGCAAAAACA ACGAAAAAATCCCTAACTGCCCTAGACGTGATTGTGGCAGATGGTGACGC TCGAGCAGCTAGCGGTGGCGAAGGACCGCAAGGACAAGCTACTCAGCCGC GTACACAAGAAGCGCATCGAACTCGACTTCCGCGACCGTGCCTCCGACGG CGATAACGTGATCCACTGCTGCCGACACTTTACACATATGTTCTCGGAAA AGGTA
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Coding sequence (CDS) from alignment at H-elongata_contig153791:49..1253-

>mRNA_H-elongata_contig153791.3551.1 ID=mRNA_H-elongata_contig153791.3551.1|Name=mRNA_H-elongata_contig153791.3551.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=690bp|location=Sequence derived from alignment at H-elongata_contig153791:49..1253- (Himanthalia elongata Himel1 dioecious)
CAGGTGCCCCTCGTAGTGTCGATCCTCATCTCCTCGGATTTCCTGCAGAT
GTGGAGGCTTGTCGACGACTGCCTCGCGTTCGTCGGCGAGCACCTGACGG
AGATCGTGAAGCTTCCGATCGACTTGTCCTGCCTCAGCGACAAGATCGTT
CTTCGTCTTGCCAAGGCGTGTGCGAAAGGCCAGGTGCCCCTCGTAGTGTC
GATCCTCATCTCCTCGGATTTCCTGCAGATGTGGAGGCTTGTCGACGACT
GCCTCGCGTTCGTCGGCGAGCACCTGACGGAGATCGTGAAGCTTCCGATC
GACTTGTCCTGCCTCAGCGACAAGATCGTTCTTCGTCTTGCCAAGGCGTG
TGCGAAAGGCATGGTGACGCTCGAGCAGCTAGCGGTGGCGAAGGACCGCA
AGGACAAGCTACTCAGCCGCGTACACAAGAAGCGCATCGAACTCGACTTC
CGCGACCGTGCCTCCGACGGCGATAACGTGATCCACTGCTGCCGACACTT
TACACATATGTTCTCGGAAAAGGTAATGGTGACGCTCGAGCAGCTAGCGG
TGGCGAAGGACCGCAAGGACAAGCTACTCAGCCGCGTACACAAGAAGCGC
ATCGAACTCGACTTCCGCGACCGTGCCTCCGACGGCGATAACGTGATCCA
CTGCTGCCGACACTTTACACATATGTTCTCGGAAAAGGTA
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