mRNA_H-elongata_contig15379.3550.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig15379.3550.1
Unique NamemRNA_H-elongata_contig15379.3550.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig15379.3550.1 vs. uniprot
Match: D7G778_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G778_ECTSI)

HSP 1 Score: 269 bits (687), Expect = 8.230e-78
Identity = 136/197 (69.04%), Postives = 165/197 (83.76%), Query Frame = 1 
Query:    1 EKSASVEATLRTEDYGTFATSFRAKDKVGA-LGPLRWTSKPLSFPFALKDPTPMVIGIVHDVKTKEGQLNFSAKLSNNLDGKIMLPSAGDPVATMIASHSPDKDSDIRASASVLDLLGSGVGNGAIGVSYRRDLDTVSGSTSRVTLESKDTGDFAWSLSNTTKRMTLVLSGRGRLGLRGSREGVASTVSLRSSFRLF 588
            +K+A VE ++R E+ G F+T+ +A +K G  LGPL+WTS P+SFPFAL++ TPMVI I HD+ TKEG L+ +AKL++N DGK+MLPS GDPVAT++ SHSPDK SDIRASA+VLDL+GSG G GAIGV+YRRDLD V+GS+SRVTLE KDTGDFAWSLSNT+KRMTLVLSGRGR+  RG   GV STVSLR SFR+F
Sbjct:  101 DKTAVVEGSIRNEELGMFSTTLKASEKEGGVLGPLKWTSNPVSFPFALQEATPMVIAIAHDINTKEGHLSIAAKLNSNFDGKLMLPSQGDPVATLVGSHSPDKASDIRASANVLDLVGSGFGKGAIGVTYRRDLDAVAGSSSRVTLEGKDTGDFAWSLSNTSKRMTLVLSGRGRVARRGEGTGVGSTVSLRQSFRMF 297
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig15379.3550.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G778_ECTSI8.230e-7869.04Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig15379contigH-elongata_contig15379:1187..6823 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons5
Model size3938
Cds size591
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig15379.3550.1prot_H-elongata_contig15379.3550.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig15379 5277..6823 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929909.3188472-UTR-H-elongata_contig15379:1186..13611622929909.3188472-UTR-H-elongata_contig15379:1186..1361Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig15379 1187..1361 -
1691679204.5312476-UTR-H-elongata_contig15379:1186..13611691679204.5312476-UTR-H-elongata_contig15379:1186..1361Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig15379 1187..1361 -
1622929909.33008-UTR-H-elongata_contig15379:2106..52761622929909.33008-UTR-H-elongata_contig15379:2106..5276Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig15379 2107..5276 -
1691679204.5400052-UTR-H-elongata_contig15379:2106..52761691679204.5400052-UTR-H-elongata_contig15379:2106..5276Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig15379 2107..5276 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929909.3424113-CDS-H-elongata_contig15379:5276..54561622929909.3424113-CDS-H-elongata_contig15379:5276..5456Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15379 5277..5456 -
1691679204.5497608-CDS-H-elongata_contig15379:5276..54561691679204.5497608-CDS-H-elongata_contig15379:5276..5456Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15379 5277..5456 -
1622929909.355816-CDS-H-elongata_contig15379:5868..59831622929909.355816-CDS-H-elongata_contig15379:5868..5983Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15379 5869..5983 -
1691679204.5594566-CDS-H-elongata_contig15379:5868..59831691679204.5594566-CDS-H-elongata_contig15379:5868..5983Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15379 5869..5983 -
1622929909.3643968-CDS-H-elongata_contig15379:6216..64311622929909.3643968-CDS-H-elongata_contig15379:6216..6431Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15379 6217..6431 -
1691679204.5698512-CDS-H-elongata_contig15379:6216..64311691679204.5698512-CDS-H-elongata_contig15379:6216..6431Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15379 6217..6431 -
1622929909.375702-CDS-H-elongata_contig15379:6742..68231622929909.375702-CDS-H-elongata_contig15379:6742..6823Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15379 6743..6823 -
1691679204.58082-CDS-H-elongata_contig15379:6742..68231691679204.58082-CDS-H-elongata_contig15379:6742..6823Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15379 6743..6823 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig15379.3550.1

>prot_H-elongata_contig15379.3550.1 ID=prot_H-elongata_contig15379.3550.1|Name=mRNA_H-elongata_contig15379.3550.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=197bp
EKSASVEATLRTEDYGTFATSFRAKDKVGALGPLRWTSKPLSFPFALKDP
TPMVIGIVHDVKTKEGQLNFSAKLSNNLDGKIMLPSAGDPVATMIASHSP
DKDSDIRASASVLDLLGSGVGNGAIGVSYRRDLDTVSGSTSRVTLESKDT
GDFAWSLSNTTKRMTLVLSGRGRLGLRGSREGVASTVSLRSSFRLF*
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mRNA from alignment at H-elongata_contig15379:1187..6823-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig15379.3550.1 ID=mRNA_H-elongata_contig15379.3550.1|Name=mRNA_H-elongata_contig15379.3550.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=5637bp|location=Sequence derived from alignment at H-elongata_contig15379:1187..6823- (Himanthalia elongata Himel1 dioecious)
GAGAAGAGCGCTAGTGTCGAGGCGACTCTCCGCACCGAGGACTACGGGAC
GTTCGCCACCTCGTTCAGGGCAAAGGATAAGGTGGGTGATGTTGCGACAG
CACCGCTAACGGAGTTTACAGCATGCGCAGCGCTCGAGTATCCCCGTTAG
AGACAGGCGTTGGAGATACAGCAGCTAACGATCGCGCCATTTGCGAGAGC
CGATAACCAACGAATGCATGGGTGTCGTAACTCTCGTAGTTGGAGACACC
ACACTTTGAGTAAGAAATAGTTAATTGAGCTCCTCGCGACCATCGGCGCG
TGCTCTCACACCCCTTTTTGCTGCCGTTGTCGAGTATTGGGCAACCTCGG
TTCGCAATCCGCGCGATCCTTGCGTGTTTTGCGTGGAAACAGGTAGGAGC
TCTAGGCCCACTGAGGTGGACGAGCAAGCCGCTGAGCTTCCCCTTTGCCC
TGAAGGACCCCACACCAATGGTGATCGGTATCGTTCACGACGTCAAGACG
AAAGAGGGCCAGCTGAACTTCTCGGCGAAGCTCAGCAATAACCTCGACGG
GAAGATCATGCTTCCTTCGGCGGGAGACCCGGTCGCAACGATGATCGCGT
CGCACAGGTGCAAGAACGACCCTCTTCCTTTGTTAATGTTTGATCTCTCG
GGGTGTCTAGGTTATAGAGTGTTCGGTCGACGTCGGGGGATGGAGGACGA
GGCTCTAAGATCGCCCCCGTTTATTCCTGTCCATGAGACTGGATATTTTC
TTCCGATATTTGGAGAGCGTTTTTGCTTCCCTTGAAGACGGCTGTTGCCC
TCTCTTCGTGTTGTGACGTCATTTTCGTTTTGCCGCACAGCCCGGACAAG
GACTCCGACATCAGGGCATCGGCAAGCGTGCTGGACCTTCTAGGCTCGGG
CGTTGGCAATGGGGCGATCGGGGTATCTTACAGGCGCGATTTGGACACCG
TGTCGGTGAGCGACGTGTATCTCGTCTCACAAAAAGACGAGACGACCACC
GGGCCGATGTGCGAACTAGAGCTAGGCGTTTTAAAGTCACCCTTTTTGTG
CGTGGGTGTGTATTTGCGACTATTTTTGTGAGTGTAATGGTATTATTTCT
TTGCAAAACGTTTGACGTTGATATATCTTAGTTTTTCCTTGGGACCCCGC
GCACGCCACAAAGCACCTGCATGACCAACCTATTGACTGTGTCTCAGCGA
TGATGCGGTTCCTGGTGGCTAATTTTTATACCCCCGAAACTCATTCTTCT
AGCTACCTCGCACAGTCTTTCTCGTAGAGTCGCAGACGTGGGGTAGGCAT
GCTCGAGCTCTAGCAGACCCACCACCTTTTCCTCCAACCCGCGTGTGGAT
CTGCGCGTCGCGTTCAGGGGTCTACTTCAAGGGTAACCCTCGAGAGCAAG
GACACGGGAGACTTCGCGTGGAGCCTGAGCAACACCACGAAGCGAATGAC
GCTGGTGCTCTCTGGTAGGGGAAGACTCGGTCTGCGAGGTTCTCGGGAAG
GGGTCGCGAGCACCGTGTCCCTGCGATCAAGCTTCCGCCTCTTTTAAGCG
CGCCTCTCCAGCTGTCCGAACGTGACGACAGTCGGGAGCAGCGCGCCAAC
AGCGTCCGCCTTTCCGCATGGTGCAGCGCCGCGGGTCACCGAACTGCCTT
TCTTAGGAACTGCTGTAGTGAAAGCTCTCCGCGTGTCTGTTGAAGCTTCG
TGCCGGAGGGATGCCTATTGCGTCTCAGTTAGTGCGCTAAAGGGTCGAAC
GCTGCCGGTAGGGGCATGGCTGAGCAACGTACTGCAGTTTCCGTATCCGT
AGGTGGGGGGCAAGAAGTGTGAGGTTTGCTCTCTCGCCCTGCGCAGAACG
GAGTTTGCCCCACATCCGATTGCTTTCATGATCGCCACATGGCTGGCACT
GGCGGTACGGCAAGGTAGTGTTCCTGCCGTCGATGGAACTCGGCGTAGAC
TTAAGAACTAGGCGCTGAGCTGTTCCGTGATAAGCTTTTGTTTCAATCAA
TGAGTCTCGCTTGATTTTGTTATTATTATTATAGTAGGCACGTGATGAGT
TGTTCATCCTGGAAACCTCCCCAGCATGTACGAGGCGGGGAACCAATATT
GGAATATCACATATTTCTAATATTATAAGGCCTCTTTTCCACCCAAGCAC
CCATACATAAATATTTATATTTACTCATTCGCGGCCAGAGAGTTAAAATT
CAAATATGTTAGCTAACTCAAAGGCTGAAGTTCCGCGTCGAGCCAGTCTT
CAAATCCTCGACAACCTAGCTTCGGTGCTTCGTGCATACCAGGTACTGCA
CTGCGCGGGCGGCACACTCCAAAATCGACCTGCTACGATTATGGTACATT
GACTATACAACACAGTACACTGGTTTACCTCTATGTGTTGTGTAATACAC
ATTCAACCGCCCCCCTCTGCTCCCTCCCAGACCTTCGTAACTGTCCATGC
ATTTCTCTTGGGTCCCTGCCTATAGCGGAGACCTTGCAATCATACACTGG
ATACGTAGTACGATGTCGACGCGGTTACTCCTCTTGGTTTGAAGGAGCAC
CACGTGCACTCGAATCGTGATTCGGCCGGCGCGGCACGCTGTGCTCGGCG
TCGAGGACGATCCGGTCGGGAAAAAACTATACACTCCTCCGAATTTCGAA
GCACTCTAACAGAGTCAAGGACAAGTATCGAGGGGGGAAATGCGCGTTCA
CAACGCACCACCAGACTCTCGAACCTCCGCAAACCACGACAGCTCAAATA
CAAAAGCCAGCGGGAAAAAAATAAAAAATAAATTACTTCGTGAATGAAAC
ATACAACGTCATGAAGGCCCTGCGCCGTCCTTACACCTGTGCTTCAAAGG
ATACTCGAGAGTTCACTCAACAGCCCCCTCAGCATCAACACTCTCTACGG
TGTTTATCGACTCTGGCACCCAATCATACCGCAACCTCCAAAACGCCCCT
CGATGTATAAACATGTAACCGCGACGGCACGGGATATACCTATCACGTAC
AGCTGTCAGTCAGTGTGGATCGGATTCTGTAAAGCATCGAAGACACTAAC
AAAAACATACACAAAACACAGGCAAACCCCAATGCGCTCCCAAAATAAAT
AGCTCCGTAAAAAAGAAAAGAAAAAAGAGTGCCTCAAGAGGATGATTGAA
GCGTGAAGCGTGCGAGAGCCGAACAGCTTGCATCCTAAAGCTGGGAGTCT
GCTATCGTACTGAATAACTAATAACATATGTCCATCAAAGAAAAGGCAAA
TAAATGCAAGGCAAGGCAAGGCAAGGCAAGGCGTGGGGCTCAATACATTG
GCCGGGGTCGAGTCACACACGGAACGTGACGTCAATCCCTCCTTCGACTG
CATGCACCCATCTTTCCCGCGATATATCCGCACCTCACCGCACCTCACCT
CAGCGCACCTTACCGTATCGTGATAAAACGAAAGAAGCTCCTATACTATA
CTATTATAGCTATATCAGGTAATGCAATGTAATGTAATCGGTTGGATCTC
AGATCCGTCTCACTACCTTAACGCAAGCGCAAGTCAAAAGCGTCACGAAG
ACCCGACGCGAAATCAATTACCGCACACGTTTCTCCTCATCGTACGATCA
GGGGAGACAAAACGCATCCGCGAACGTCATAATCTGTTCGCAAAACGATT
GGCGTCTGCTGTAACACATGCGACCGTCAAATCACGAATTAAGTGTTACG
AGCTTCTTCCACCCAGCTTAACCTTACGAACAAATCGACTACCAAAACAA
GAACCAATGTACAAACGCAGGGGTTATCACCCCCCCCCCTCTCGGCCTCC
GCCAACAAGAGTGCAAACCCAGTGTGATCAAGTCATGAGCACCCATTTCC
GTCCCGACCTCTACAAAAGCCTACCACAATCGAAAACTAAACATATTTCG
TTGTTTCTTTCTGTCCCTCGTAATAAGCCGTAAGCTTCGTGGGACATACT
TGAGCTGCGATTATATAATGTTGGAGAGTATTGTACGCTCAAAACCCAAC
GATTTCAATCCTTGCATGTACATTAGTCCGTCAATGACATGAGGCATAAC
ACCTCAAATCCAATCACCTCTCCTTTTCATCATAGAGCTCAGCAAATGGG
GGCACTAGCAGCCTGTTTCCATCATGGCCCAGGTTGCCTCCAGCCAGTCC
TCAGAGGTGAGCGCTTCAGTTTCCTCTATCATCACATCTTTCGGCTCCAG
CGGCACCAGCACTTCATACGATGGGTCATCATACGGAGCGAACGGCTCCG
CTTCTATCGCCGCAAACGGTGTTGACGGCTTCGGCTTTAGCAATAACGCC
TCAAGAGCCGATGGTGGCGCTTTCTCCTTCAGATTGAAGACGTTCGGCTT
CGGCGATAGTATGGGGACCACGGTCGCCATGATCTTATTACAGCCAGTTA
TCTCGTCTGGCTCAACGGTAAACGCCACTTCATCGGTCTTACACTGCACC
TCAGACGGCCAGGCTTCGTGCTCGCCTGAGCTATTGGACGACGACGGGCT
CACGGCGCGGATGCCGAAGGGGGCACCGTCGAAGACAAGCGGAAACGACT
CATCTTCGATCTCTGTGGTGAAGTATTTGTGGTGATCGTGGTCCAGCGCC
TCTTCTTTTTTGTCCACGGGCATCGCTGATGTGATCGGTGATGTGTGTTG
GCATCGTTGAGTAGAGGAGAATGCTATCTCGTCGCTCGATACCACCCATC
TCATGGAGCTGCTCAGGGTGAATTGTTCGGAGGGGGGAAATGGCGTTCCA
TTGGGTGGGTTCGCGAGTGTGGTAGGGTGAATATGGCATTAGTAGTAGAG
TAGAACTTTCTATAGTTTAATATAGTATAGTATCTAATAATAAACCAGAT
ATAACAATCCTCATTTCAAACAACAAGTGCGTAAAAAAAAAAGAAATAGA
GCAAGGGGGACGCGCGACTCGGAGCCAGGAGAGGCGAAGCGGCAAAGGGG
ACTAATTTAAACTCTCGAGCGGAGAAAGGGGGGTCGAATACACTCCTCTA
CCGCGGCGACTACTCGCTGCAAGACTGCCAGGCTGCAAGGAAAGCTGAGG
CATCAAAACATCGTTTGTTACGCACGAACGACACATGCGTGTCAACTGTA
CACCGTCTTCTCTAGACATTCGGGTGTTTTCCAACGTCCTCCTCCCGATG
AGAGGTGTGAGGACTTATATTTTCGGCCCATAGAAACGAGGTAGATACTA
ATCCAACTCTGGCCTAGTGTGTGGTTGTTGTTGGACGATTTAAGTAGCTT
TATTCCTGCACCAACCCCTCCTTCCTCCAAGCTAAAACAGTGTAAGTGAC
TGTCAAAAACACTTGTCAAAATGACGTGCTGTCCTTCAAACATCAAACAT
CAACCAACACCTACGGCACGAAAATATCAACAACGGTCGGTATTATTAAC
TGCCACCCAGTGTACGCACCGTTACATGTACCGATACAGCGGCGCGTCCT
TACCTGCAGTAGAAATTGTCGCACTGCATTGCCTCTTCTTCCCACTCTTC
AAGGGGCGGCATGGACGGGAATTTCCCTCTCGTGGGGTTGTAGGTCGACC
GCAGCGTCTCGTACAGCTCCCGCGCCCTCGGGTAATCATTCGACATGGTA
GCCAAAACTGACGCGAGGATGTGCGACGTGTGCATCC
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Coding sequence (CDS) from alignment at H-elongata_contig15379:1187..6823-

>mRNA_H-elongata_contig15379.3550.1 ID=mRNA_H-elongata_contig15379.3550.1|Name=mRNA_H-elongata_contig15379.3550.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1182bp|location=Sequence derived from alignment at H-elongata_contig15379:1187..6823- (Himanthalia elongata Himel1 dioecious)
GAGAAGAGCGCTAGTGTCGAGGCGACTCTCCGCACCGAGGACTACGGGAC
GTTCGCCACCTCGTTCAGGGCAAAGGATAAGGAGAAGAGCGCTAGTGTCG
AGGCGACTCTCCGCACCGAGGACTACGGGACGTTCGCCACCTCGTTCAGG
GCAAAGGATAAGGTAGGAGCTCTAGGCCCACTGAGGTGGACGAGCAAGCC
GCTGAGCTTCCCCTTTGCCCTGAAGGACCCCACACCAATGGTGATCGGTA
TCGTTCACGACGTCAAGACGAAAGAGGGCCAGCTGAACTTCTCGGCGAAG
CTCAGCAATAACCTCGACGGGAAGATCATGCTTCCTTCGGCGGGAGACCC
GGTCGCAACGATGATCGCGTCGCACAGGTAGGAGCTCTAGGCCCACTGAG
GTGGACGAGCAAGCCGCTGAGCTTCCCCTTTGCCCTGAAGGACCCCACAC
CAATGGTGATCGGTATCGTTCACGACGTCAAGACGAAAGAGGGCCAGCTG
AACTTCTCGGCGAAGCTCAGCAATAACCTCGACGGGAAGATCATGCTTCC
TTCGGCGGGAGACCCGGTCGCAACGATGATCGCGTCGCACAGCCCGGACA
AGGACTCCGACATCAGGGCATCGGCAAGCGTGCTGGACCTTCTAGGCTCG
GGCGTTGGCAATGGGGCGATCGGGGTATCTTACAGGCGCGATTTGGACAC
CGTGTCGCCCGGACAAGGACTCCGACATCAGGGCATCGGCAAGCGTGCTG
GACCTTCTAGGCTCGGGCGTTGGCAATGGGGCGATCGGGGTATCTTACAG
GCGCGATTTGGACACCGTGTCGGGGTCTACTTCAAGGGTAACCCTCGAGA
GCAAGGACACGGGAGACTTCGCGTGGAGCCTGAGCAACACCACGAAGCGA
ATGACGCTGGTGCTCTCTGGTAGGGGAAGACTCGGTCTGCGAGGTTCTCG
GGAAGGGGTCGCGAGCACCGTGTCCCTGCGATCAAGCTTCCGCCTCTTTT
AAGGGTCTACTTCAAGGGTAACCCTCGAGAGCAAGGACACGGGAGACTTC
GCGTGGAGCCTGAGCAACACCACGAAGCGAATGACGCTGGTGCTCTCTGG
TAGGGGAAGACTCGGTCTGCGAGGTTCTCGGGAAGGGGTCGCGAGCACCG
TGTCCCTGCGATCAAGCTTCCGCCTCTTTTAA
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