mRNA_H-elongata_contig153751.3546.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig153751.3546.1
Unique NamemRNA_H-elongata_contig153751.3546.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig153751.3546.1 vs. uniprot
Match: A0A6G0VQN5_APHCR (Zinc finger BED domain-containing protein 1-like (Fragment) n=1 Tax=Aphis craccivora TaxID=307492 RepID=A0A6G0VQN5_APHCR)

HSP 1 Score: 68.9 bits (167), Expect = 1.570e-11
Identity = 35/78 (44.87%), Postives = 48/78 (61.54%), Query Frame = 1
Query:   49 VSESDLNCSDSPLGWWAKAARVYPHVATLARKYLAVQASSAASERVFSVGGLVVPKKRDLLSGDRVADIVFLHESMKH 282
            +  S +     PL WW+     YP ++ LA+KYL VQA+S ASERVFS GGLVV   R  L+ D V+++V+L  +  H
Sbjct:  513 IEFSKVPYEQDPLKWWSLNCTTYPFLSILAKKYLTVQATSVASERVFSKGGLVVTDHRASLTNDHVSELVYLSMNKAH 590          
BLAST of mRNA_H-elongata_contig153751.3546.1 vs. uniprot
Match: UPI0019555042 (zinc finger BED domain-containing protein 4-like n=1 Tax=Pimephales promelas TaxID=90988 RepID=UPI0019555042)

HSP 1 Score: 68.2 bits (165), Expect = 1.900e-11
Identity = 34/74 (45.95%), Postives = 45/74 (60.81%), Query Frame = 1
Query:   64 LNCSDSPLGWWAKAARVYPHVATLARKYLAVQASSAASERVFSVGGLVVPKKRDLLSGDRVADIVFLHESMKHE 285
            ++   +PL WW      YPH+A LA+ YLAV A+S  SERVFS  G +V   R  LS D V  ++FL ++MK E
Sbjct:  231 ISLDSNPLEWWRTNEPTYPHIAKLAKHYLAVPATSVPSERVFSTAGDIVTASRSSLSADNVDKLIFLTKNMKVE 304          
BLAST of mRNA_H-elongata_contig153751.3546.1 vs. uniprot
Match: A0A672JL57_SALFA (BED-type domain-containing protein n=5 Tax=Salarias fasciatus TaxID=181472 RepID=A0A672JL57_SALFA)

HSP 1 Score: 68.6 bits (166), Expect = 2.160e-11
Identity = 31/75 (41.33%), Postives = 48/75 (64.00%), Query Frame = 1
Query:   55 ESDLNCSDSPLGWWAKAARVYPHVATLARKYLAVQASSAASERVFSVGGLVVPKKRDLLSGDRVADIVFLHESMK 279
            ES L  +  PL WW +    YPH++T+AR++L V  +S ++ERVFS  G +V  KR +L  + V  +VFL +++K
Sbjct:  512 ESPLPLNGDPLNWWMEHEGAYPHISTVARRFLCVPGTSVSAERVFSTAGDIVTAKRSVLKAEHVDQLVFLQKNLK 586          
BLAST of mRNA_H-elongata_contig153751.3546.1 vs. uniprot
Match: A0A8C2FYL1_CYPCA (BED-type domain-containing protein n=1 Tax=Cyprinus carpio TaxID=7962 RepID=A0A8C2FYL1_CYPCA)

HSP 1 Score: 68.2 bits (165), Expect = 2.950e-11
Identity = 33/72 (45.83%), Postives = 48/72 (66.67%), Query Frame = 1
Query:   64 LNCSDSPLGWWAKAARVYPHVATLARKYLAVQASSAASERVFSVGGLVVPKKRDLLSGDRVADIVFLHESMK 279
            ++   +PL WW      YPH++ LA++YLAVQA+S ASERVFS  G +V  +R  LS + V  ++FL ++MK
Sbjct:  561 ISVDSNPLKWWKDNEHQYPHLSKLAKRYLAVQATSVASERVFSTAGDIVTAQRAALSPENVDILIFLKKNMK 632          
BLAST of mRNA_H-elongata_contig153751.3546.1 vs. uniprot
Match: A0A498LK61_LABRO (Zinc finger BED domain-containing 1-like protein n=1 Tax=Labeo rohita TaxID=84645 RepID=A0A498LK61_LABRO)

HSP 1 Score: 65.9 bits (159), Expect = 2.970e-11
Identity = 32/72 (44.44%), Postives = 48/72 (66.67%), Query Frame = 1
Query:   64 LNCSDSPLGWWAKAARVYPHVATLARKYLAVQASSAASERVFSVGGLVVPKKRDLLSGDRVADIVFLHESMK 279
            ++   +PL WW      YP+++ LA++YLAVQA+S ASERVFS  G +V  +R  LS + V  ++FL ++MK
Sbjct:  103 ISVDSNPLKWWKDNENQYPNLSKLAKRYLAVQATSVASERVFSTAGDIVTSQRAALSTENVDILIFLKKNMK 174          
BLAST of mRNA_H-elongata_contig153751.3546.1 vs. uniprot
Match: UPI0011B655F8 (zinc finger BED domain-containing protein 1-like n=1 Tax=Gadus morhua TaxID=8049 RepID=UPI0011B655F8)

HSP 1 Score: 66.6 bits (161), Expect = 3.700e-11
Identity = 31/68 (45.59%), Postives = 43/68 (63.24%), Query Frame = 1
Query:   76 DSPLGWWAKAARVYPHVATLARKYLAVQASSAASERVFSVGGLVVPKKRDLLSGDRVADIVFLHESMK 279
            ++PL WW      YPH+A LAR+YLAV  +S  SERVFS  G +V   R  LS + V  ++FL ++M+
Sbjct:  165 ENPLAWWRSNEHKYPHIAKLARRYLAVPGTSVPSERVFSTAGDIVHASRSRLSAENVDKLIFLQKNMR 232          
BLAST of mRNA_H-elongata_contig153751.3546.1 vs. uniprot
Match: A0A6P8SP15_GYMAC (zinc finger BED domain-containing protein 1-like n=1 Tax=Gymnodraco acuticeps TaxID=8218 RepID=A0A6P8SP15_GYMAC)

HSP 1 Score: 66.2 bits (160), Expect = 4.500e-11
Identity = 35/79 (44.30%), Postives = 48/79 (60.76%), Query Frame = 1
Query:   43 HVVSESDLNCSDSPLGWWAKAARVYPHVATLARKYLAVQASSAASERVFSVGGLVVPKKRDLLSGDRVADIVFLHESMK 279
            ++ ++S    SD PL WW      YPHVA LA++YLAV A+S  SERVFS  G +V   R  LS   V  ++FL +++K
Sbjct:  144 YMAADSTSLDSD-PLAWWKNNEAKYPHVAMLAKRYLAVSATSVPSERVFSTAGDIVSASRSALSASNVDKLIFLKKNLK 221          
BLAST of mRNA_H-elongata_contig153751.3546.1 vs. uniprot
Match: UPI001C59CA0C (zinc finger BED domain-containing protein 4-like n=1 Tax=Cyprinus carpio TaxID=7962 RepID=UPI001C59CA0C)

HSP 1 Score: 67.0 bits (162), Expect = 5.410e-11
Identity = 33/72 (45.83%), Postives = 47/72 (65.28%), Query Frame = 1
Query:   64 LNCSDSPLGWWAKAARVYPHVATLARKYLAVQASSAASERVFSVGGLVVPKKRDLLSGDRVADIVFLHESMK 279
            ++   +PL WW      YPH++ LA+ YLAVQA+S ASERVFS  G +V  +R  LS + V  ++FL ++MK
Sbjct:  245 ISVDSNPLKWWKDNEHQYPHLSKLAKHYLAVQATSVASERVFSTAGDIVTAQRAALSPENVDILIFLKKNMK 316          
BLAST of mRNA_H-elongata_contig153751.3546.1 vs. uniprot
Match: R7V9U3_CAPTE (Dimer_Tnp_hAT domain-containing protein n=3 Tax=Capitella teleta TaxID=283909 RepID=R7V9U3_CAPTE)

HSP 1 Score: 63.2 bits (152), Expect = 7.280e-11
Identity = 39/97 (40.21%), Postives = 54/97 (55.67%), Query Frame = 1
Query:    4 EVESGCDKKVPDP--HVVSE---SDLNCSDSPLGWWAKAARVYPHVATLARKYLAVQASSAASERVFSVGGLVVPKKRDLLSGDRVADIVFLHESMK 279
            E  S    + PDP   VV     S +  S+ PL +W +     PH+A+LA KYL+VQ SS ASER+FS  G +V  KR  +    V  ++FLH+ +K
Sbjct:    8 EESSSVSSQRPDPTEEVVKYRRISQIKPSEDPLAFWRERRFELPHLASLACKYLSVQESSIASERIFSSAGNIVNAKRSCIDPVHVDQLIFLHKFLK 104          
BLAST of mRNA_H-elongata_contig153751.3546.1 vs. uniprot
Match: J9LJT7_ACYPI (BED-type domain-containing protein n=2 Tax=Macrosiphini TaxID=33386 RepID=J9LJT7_ACYPI)

HSP 1 Score: 67.0 bits (162), Expect = 7.510e-11
Identity = 32/73 (43.84%), Postives = 46/73 (63.01%), Query Frame = 1
Query:   64 LNCSDSPLGWWAKAARVYPHVATLARKYLAVQASSAASERVFSVGGLVVPKKRDLLSGDRVADIVFLHESMKH 282
            ++   +PL WW   + +YP +  LARK+L +QA+S ASERVFS GGL+V   R  L+ D  + +VFL  +  H
Sbjct:  567 ISFCQNPLKWWNLNSSMYPFLTILARKFLTIQATSVASERVFSKGGLIVTDHRATLTNDHASQLVFLSANKAH 639          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig153751.3546.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6G0VQN5_APHCR1.570e-1144.87Zinc finger BED domain-containing protein 1-like (... [more]
UPI00195550421.900e-1145.95zinc finger BED domain-containing protein 4-like n... [more]
A0A672JL57_SALFA2.160e-1141.33BED-type domain-containing protein n=5 Tax=Salaria... [more]
A0A8C2FYL1_CYPCA2.950e-1145.83BED-type domain-containing protein n=1 Tax=Cyprinu... [more]
A0A498LK61_LABRO2.970e-1144.44Zinc finger BED domain-containing 1-like protein n... [more]
UPI0011B655F83.700e-1145.59zinc finger BED domain-containing protein 1-like n... [more]
A0A6P8SP15_GYMAC4.500e-1144.30zinc finger BED domain-containing protein 1-like n... [more]
UPI001C59CA0C5.410e-1145.83zinc finger BED domain-containing protein 4-like n... [more]
R7V9U3_CAPTE7.280e-1140.21Dimer_Tnp_hAT domain-containing protein n=3 Tax=Ca... [more]
J9LJT7_ACYPI7.510e-1143.84BED-type domain-containing protein n=2 Tax=Macrosi... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig153751contigH-elongata_contig153751:69..362 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score68.6
Seed ortholog evalue1.9e-09
Seed eggNOG ortholog7029.ACYPI42913-PA
Preferred nameZBED1
EggNOG free text desc.Zinc finger, BED-type containing 1
EggNOG OGs39X45@33154,3BJIV@33208,3E423@33213,KOG1121@1,KOG1121@2759
COG Functional cat.L
Best tax levelBilateria
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size294
Cds size294
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929909.0984821-CDS-H-elongata_contig153751:68..3621622929909.0984821-CDS-H-elongata_contig153751:68..362Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig153751 69..362 -
1691679204.3924072-CDS-H-elongata_contig153751:68..3621691679204.3924072-CDS-H-elongata_contig153751:68..362Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig153751 69..362 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig153751.3546.1prot_H-elongata_contig153751.3546.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig153751 69..362 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig153751.3546.1

>prot_H-elongata_contig153751.3546.1 ID=prot_H-elongata_contig153751.3546.1|Name=mRNA_H-elongata_contig153751.3546.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=98bp
DEVESGCDKKVPDPHVVSESDLNCSDSPLGWWAKAARVYPHVATLARKYL
AVQASSAASERVFSVGGLVVPKKRDLLSGDRVADIVFLHESMKHELW*
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mRNA from alignment at H-elongata_contig153751:69..362-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig153751.3546.1 ID=mRNA_H-elongata_contig153751.3546.1|Name=mRNA_H-elongata_contig153751.3546.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=294bp|location=Sequence derived from alignment at H-elongata_contig153751:69..362- (Himanthalia elongata Himel1 dioecious)
GATGAAGTCGAAAGCGGCTGTGACAAAAAGGTCCCAGATCCTCACGTTGT GTCAGAGAGCGACTTAAACTGCTCAGACAGCCCTCTAGGGTGGTGGGCAA AGGCCGCCCGAGTGTATCCCCATGTGGCCACGCTAGCTCGAAAGTATCTT GCAGTTCAAGCTTCATCTGCTGCGTCAGAACGAGTTTTCTCTGTAGGTGG ACTCGTAGTCCCAAAGAAGCGAGACCTTCTGTCCGGAGATCGGGTAGCAG ACATTGTTTTCCTTCACGAGAGCATGAAACACGAACTCTGGTAG
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Coding sequence (CDS) from alignment at H-elongata_contig153751:69..362-

>mRNA_H-elongata_contig153751.3546.1 ID=mRNA_H-elongata_contig153751.3546.1|Name=mRNA_H-elongata_contig153751.3546.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=588bp|location=Sequence derived from alignment at H-elongata_contig153751:69..362- (Himanthalia elongata Himel1 dioecious)
GATGAAGTCGAAAGCGGCTGTGACAAAAAGGTCCCAGATCCTCACGTTGT
GTCAGAGAGCGACTTAAACTGCTCAGACAGCCCTCTAGGGTGGTGGGCAA
AGGCCGCCCGAGTGTATCCCCATGTGGCCACGCTAGCTCGAAAGTATCTT
GCAGTTCAAGCTTCATCTGCTGCGTCAGAACGAGTTTTCTCTGTAGGTGG
ACTCGTAGTCCCAAAGAAGCGAGACCTTCTGTCCGGAGATCGGGTAGCAG
ACATTGTTTTCCTTCACGAGAGCATGAAACACGAACTCTGGTAGGATGAA
GTCGAAAGCGGCTGTGACAAAAAGGTCCCAGATCCTCACGTTGTGTCAGA
GAGCGACTTAAACTGCTCAGACAGCCCTCTAGGGTGGTGGGCAAAGGCCG
CCCGAGTGTATCCCCATGTGGCCACGCTAGCTCGAAAGTATCTTGCAGTT
CAAGCTTCATCTGCTGCGTCAGAACGAGTTTTCTCTGTAGGTGGACTCGT
AGTCCCAAAGAAGCGAGACCTTCTGTCCGGAGATCGGGTAGCAGACATTG
TTTTCCTTCACGAGAGCATGAAACACGAACTCTGGTAG
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