mRNA_H-elongata_contig15356.3533.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig15356.3533.1
Unique NamemRNA_H-elongata_contig15356.3533.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig15356.3533.1 vs. uniprot
Match: A0A6H5K8T1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8T1_9PHAE)

HSP 1 Score: 218 bits (554), Expect = 5.190e-62
Identity = 125/269 (46.47%), Postives = 168/269 (62.45%), Query Frame = 1 
Query:    1 IVWDVTRFRGLNRNDLRKVVHEDIMRWLYILRLRAPGATVIMVANKCDRSMGDFSETANRVDVLVKRLLEEWQAERGLSRGLVRNITEMRLLEGVSRVSCTDYG-----GIRELVWRISAQGATIIQVPPSWDLALKVIDALRDGQEPVRAAREHLQLSRTRLRDNEGYNTVAHTFTTKAELFHVLKNIVRQVSRGVEATGQTAAVSNLTSALNGALWISEFAGKILTIDSGDLIFLDVNWLSNVLSPIMSHKLHRERFKSEALCVQRD 792
            +V D+T++ G++  DL K +H+DIMRWLY L LRAPG+TV++VANKCD S+  F+ETA R+   V+ L+  W   RGL      ++T++ LL G+SRVSC + G     G+  L+  IS Q AT I VPP+WDLAL+VI ALR    P+ AAR+ L L      D    +  A  F +K EL    +++V  +   V A    A +SN  SAL GALWIS+FAG  L +D GD IFLDV WLS  LSPI+SHKL  + F++  L ++ D
Sbjct:  149 LVVDITKYHGVD--DLDKAIHDDIMRWLYYLYLRAPGSTVVLVANKCDGSIDKFAETAERIQRRVRELVAVWHEARGLRGRSKGHVTDLTLLPGMSRVSCQEKGSPEASGLPALIALISRQAATAIHVPPAWDLALEVIGALRASCNPIAAARDKLGLPNPLPADGVA-DVHAFAFISKDELSRKWRSVVDNLRDDVPA----AMISNWESALEGALWISDFAGHTLRVDGGDGIFLDVLWLSKCLSPILSHKLKNQPFENRWLWMRDD 410
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BLAST of mRNA_H-elongata_contig15356.3533.1 vs. uniprot
Match: D7FVX5_ECTSI (LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVX5_ECTSI)

HSP 1 Score: 218 bits (555), Expect = 3.360e-61
Identity = 120/264 (45.45%), Postives = 158/264 (59.85%), Query Frame = 1 
Query:    1 IVWDVTRFRGLNRNDLRKVVHEDIMRWLYILRLRAPGATVIMVANKCDRSMGDFSETANRVDVLVKRLLEEWQAERGLSRGLVRNITEMRLLEGVSRVSCTDYGGIRELVWRISAQGATIIQVPPSWDLALKVIDALRDGQEPVRAAREHLQLSRTRLRDNEGYNTVAHTFTTKAELFHVLKNIVRQVSRGVEATGQTAAVSNLTSALNGALWISEFAGKILTIDSGDLIFLDVNWLSNVLSPIMSHKLHRERFKSEALCVQRD 792
            +VWDV+R  G   NDL KVV EDIM+WLY L LR PG+ V++VANKCD S+ +F  TA  V+   +R L+EWQ  R         +T++ +L+  S VSC D GG+ E++ R+ AQGAT I VPPSW LAL  +DALRD ++P  A R  L L      D E       +F T++ LF    + V+ V+  + +  +  AVS+   A+ GALWISEFAG IL +   D+IFLDV WLS  L PI+SHKL    F    L   +D
Sbjct:  464 LVWDVSRCHGKESNDLDKVVSEDIMKWLYALHLRVPGSAVLLVANKCDGSLQEFVGTAGAVESSARRQLQEWQGNRKSP-----GVTKLTILQQPSLVSCDDGGGLSEVIARVDAQGATSIVVPPSWGLALAFLDALRDSRDPEPATRRFLHLDF----DAEVGAAQGSSFMTESTLFQRWNDTVKSVAGELTSPAERMAVSDHHGAMEGALWISEFAGHILRVAHSDVIFLDVVWLSAALKPILSHKLESHFFPRSELTAMKD 718
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BLAST of mRNA_H-elongata_contig15356.3533.1 vs. uniprot
Match: A0A6H5JW02_9PHAE (Roc domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JW02_9PHAE)

HSP 1 Score: 209 bits (532), Expect = 2.400e-58
Identity = 118/256 (46.09%), Postives = 164/256 (64.06%), Query Frame = 1 
Query:    1 IVWDVTRFRGLNRNDLRKVVHEDIMRWLYILRLRAPGATVIMVANKCDRSMGDFSETANRVDVLVKRLLEEWQAERGLSRGLVRNITEMRLLEGVSRVSCTDYGGIRELVWRISAQGATIIQVPPSWDLALKVIDALRDGQEPVRAAREHLQL-SRTRL-RDNEGYNTVAHTFTTKAELFHVLKNIVRQVSRGVEATGQTAAVSNLTSALNGALWISEFAGKILTIDSGDLIFLDVNWLSNVLSPIMSHKLHRERF 762
            +VWDV R  G   +DL +V+ +DIMRWLY+L LRAPG+TVI+VANKCD S+ DF+ TA  V+  V  L +EW+  RG S    R   +M +LE  S VSC D  G++E++ RI+AQ A  ++VPP+W LAL  +DALRD ++P +A R+ L L SR ++  D E       +F T+  L    K +V+ V   + +  +  AVS+   A+ GALWISEFAG++L + +GD +FLDV WLS  L PI+ HKL  + F
Sbjct:  302 LVWDVLRCHGKTDDDLDEVIFQDIMRWLYVLHLRAPGSTVILVANKCDGSIEDFTGTAAVVEERVAVLRKEWRKARGFSS--TRMDMDMTVLERSSLVSCLDGVGLQEMIDRIAAQSAASMRVPPAWGLALTFLDALRDSRDPQQACRDCLSLGSRPKVGADREP----GRSFFTENSLVEQWKGVVQNVEGELRSDAEKMAVSDPDGAIEGALWISEFAGQVLRVANGDGVFLDVVWLSTALKPILDHKLVHKVF 551
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BLAST of mRNA_H-elongata_contig15356.3533.1 vs. uniprot
Match: A0A0M0JEU0_9EUKA (Small gtp-binding protein n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0JEU0_9EUKA)

HSP 1 Score: 58.2 bits (139), Expect = 6.680e-6
Identity = 67/269 (24.91%), Postives = 112/269 (41.64%), Query Frame = 1 
Query:   76 RWLYILRLRAPGATVIMVANKCDRSMGDFSETANRVDVLVKRLLE---EW-QAERGLSRGLVRNITEMRLLEGVSRVSCTDYGG---------IRELVWRISAQGATIIQ-VPPSWDLALKVIDALRDGQEPVRAAREHLQLSRTRLRDNEGYNTVAHTFTTKAELFHVLKNIVRQVSRGVEATGQTAAVSNLTSALNGALWISEFAGKI---------------LTIDSGD------LIFLDVNWLSNVLSPIMSHKLHRERFKSEAL 777
            RWL  L+  AP A V  V   CDR     S  A R   + +       EW +    L +    +   +R+ E V  VSC   G          + ELV+      +++ Q +P +W LA+  + ALRDG++P+ AAR  + L  T+    +     A      A +     N   Q S G        A S +T A   +LW++E   ++               L ++ G+      +I+L  ++++ +L P++ H+L    F+ + L
Sbjct: 2988 RWLDYLQAGAPEAVVQPVITHCDRLFA--SPGAGRTHAMFENAAATQIEWVKTNIALHQSQQGDAKRLRVQERVVCVSCIAGGDASLDFLRQRLEELVFAKPPLLSSVGQMIPRTWLLAMAYLRALRDGRDPIEAARASIDLQVTKKGVADAAAQEAAHEPLPAVVASTSSNDTLQSSMG-------KARSYITLAEAHSLWLNEVVPRLANVSADKTVLDDALQLLVNQGEFFSSCGIIYLQPDYVTRLLKPLVDHRLSTAAFRKQLL 3247
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig15356.3533.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5K8T1_9PHAE5.190e-6246.47Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FVX5_ECTSI3.360e-6145.45LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus s... [more]
A0A6H5JW02_9PHAE2.400e-5846.09Roc domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A0M0JEU0_9EUKA6.680e-624.91Small gtp-binding protein n=1 Tax=Chrysochromulina... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig15356contigH-elongata_contig15356:3398..4735 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score219.9
Seed ortholog evalue1.4e-54
Seed eggNOG ortholog2880.D7FVX5
Preferred nameSLITRK2
GOsGO:0000902,GO:0000904,GO:0005575,GO:0005623,GO:0005886,GO:0007275,GO:0007399,GO:0007409,GO:0008150,GO:0009653,GO:0009987,GO:0016020,GO:0016021,GO:0016043,GO:0022008,GO:0030030,GO:0030154,GO:0030182,GO:0031175,GO:0031224,GO:0032501,GO:0032502,GO:0032989,GO:0032990,GO:0044087,GO:0044089,GO:0044425,GO:0044464,GO:0048468,GO:0048518,GO:0048522,GO:0048666,GO:0048667,GO:0048699,GO:0048731,GO:0048812,GO:0048856,GO:0048858,GO:0048869,GO:0050789,GO:0050793,GO:0050794,GO:0050803,GO:0050807,GO:0051094,GO:0051128,GO:0051130,GO:0051239,GO:0051240,GO:0051960,GO:0051962,GO:0051963,GO:0051965,GO:0061564,GO:0065007,GO:0065008,GO:0071840,GO:0071944,GO:0120036,GO:0120039,GO:2000026
EggNOG free text desc.positive regulation of synapse assembly
EggNOG OGs2CMPC@1,2QR6C@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons3
Model size795
Cds size792
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig15356.3533.1prot_H-elongata_contig15356.3533.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig15356 3400..4735 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929907.6359203-CDS-H-elongata_contig15356:3399..35471622929907.6359203-CDS-H-elongata_contig15356:3399..3547Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15356 3400..3547 -
1691679203.7751372-CDS-H-elongata_contig15356:3399..35471691679203.7751372-CDS-H-elongata_contig15356:3399..3547Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15356 3400..3547 -
1622929907.6523054-CDS-H-elongata_contig15356:3837..44271622929907.6523054-CDS-H-elongata_contig15356:3837..4427Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15356 3838..4427 -
1691679203.7847247-CDS-H-elongata_contig15356:3837..44271691679203.7847247-CDS-H-elongata_contig15356:3837..4427Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15356 3838..4427 -
1622929907.6669247-CDS-H-elongata_contig15356:4681..47351622929907.6669247-CDS-H-elongata_contig15356:4681..4735Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15356 4682..4735 -
1691679203.7943184-CDS-H-elongata_contig15356:4681..47351691679203.7943184-CDS-H-elongata_contig15356:4681..4735Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15356 4682..4735 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig15356.3533.1

>prot_H-elongata_contig15356.3533.1 ID=prot_H-elongata_contig15356.3533.1|Name=mRNA_H-elongata_contig15356.3533.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=264bp
IVWDVTRFRGLNRNDLRKVVHEDIMRWLYILRLRAPGATVIMVANKCDRS
MGDFSETANRVDVLVKRLLEEWQAERGLSRGLVRNITEMRLLEGVSRVSC
TDYGGIRELVWRISAQGATIIQVPPSWDLALKVIDALRDGQEPVRAAREH
LQLSRTRLRDNEGYNTVAHTFTTKAELFHVLKNIVRQVSRGVEATGQTAA
VSNLTSALNGALWISEFAGKILTIDSGDLIFLDVNWLSNVLSPIMSHKLH
RERFKSEALCVQRD
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mRNA from alignment at H-elongata_contig15356:3398..4735-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig15356.3533.1 ID=mRNA_H-elongata_contig15356.3533.1|Name=mRNA_H-elongata_contig15356.3533.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1338bp|location=Sequence derived from alignment at H-elongata_contig15356:3398..4735- (Himanthalia elongata Himel1 dioecious)
ATCGTGTGGGATGTTACACGTTTTCGCGGCCTCAACAGAAACGATCTCAG
AAAGGTGGGTCAAGGTTTAGGATTGAAGTACAAATGTCTGTTAAAAAACA
AACAAACATGGAATCAATACAGGTTTTCACTGCTAGACCCCACAGTAGTT
GCCCGACATTGGGTAGGGATAGTGATCGAGCAATGGGTGGTTTCAATTGG
GCATTCAAAAGATCGGAGGGGTTCTCTCGAGTCTTAAACGCCTGCTGCGC
TTGAACAATAACGACACAATGACTCTTAAAAAAATAATCGAATTATGTCG
GGGGGCAGGTCGTCCACGAGGATATCATGAGATGGCTGTATATCCTCCGC
CTTCGGGCACCAGGAGCCACGGTGATAATGGTTGCCAATAAGTGCGATAG
GTCAATGGGAGATTTCTCAGAGACTGCAAATCGAGTCGATGTACTCGTAA
AACGATTGCTGGAAGAATGGCAGGCCGAACGAGGCTTGAGCCGTGGTTTG
GTCCGAAATATTACGGAGATGAGACTGCTTGAGGGTGTAAGCCGCGTCAG
CTGCACTGACTACGGCGGAATCAGGGAATTGGTCTGGCGTATTTCAGCTC
AAGGTGCCACGATCATTCAGGTGCCACCCTCGTGGGATCTCGCCCTCAAG
GTGATTGATGCCCTGCGGGACGGCCAGGAACCAGTGCGGGCTGCCCGGGA
GCATCTACAGCTGTCCAGAACAAGGCTACGCGATAATGAAGGATATAATA
CGGTGGCACACACCTTCACGACAAAGGCGGAGCTGTTCCATGTCTTGAAA
AACATTGTGCGGCAAGTGTCACGCGGCGTGGAAGCGACGGGGCAGACGGC
AGCTGTTTCCAACTTGACAAGTGCTCTTAATGGTGCCCTTTGGATCAGGT
GGGGAATACACTTTCTAGTTCTATAAATTGACGACCAGGCCAATGTTTGT
CATGCTGTTGTTAACAGATCATCAGGTGCCAAGCGAAGAAGTATCGCTAT
GGACAAATATCCCCAAAACCTAATCTGGTAGTCATCAACTGGAACCGCGG
TACACGTACGGTGAGCAGGATCGCATTAAAATGGTTGATAATACAGCTAT
ACCGTAACCGAGTGACTAGACGTAACCGAAGTTTAATCACGACCGTTCCA
CCCTGCGTGTGCTTGATGCATCTCCCGTGGTCTTCCAGTGAATTTGCAGG
GAAAATCCTGACCATCGACAGCGGTGACTTAATCTTCCTAGATGTAAACT
GGCTCTCAAACGTTTTAAGTCCTATCATGAGCCACAAGCTGCACAGAGAA
AGGTTCAAATCGGAGGCCCTGTGCGTGCAGAGAGATGA
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Coding sequence (CDS) from alignment at H-elongata_contig15356:3398..4735-

>mRNA_H-elongata_contig15356.3533.1 ID=mRNA_H-elongata_contig15356.3533.1|Name=mRNA_H-elongata_contig15356.3533.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1584bp|location=Sequence derived from alignment at H-elongata_contig15356:3398..4735- (Himanthalia elongata Himel1 dioecious)
ATCGTGTGGGATGTTACACGTTTTCGCGGCCTCAACAGAAACGATCTCAG
AAAGATCGTGTGGGATGTTACACGTTTTCGCGGCCTCAACAGAAACGATC
TCAGAAAGGTCGTCCACGAGGATATCATGAGATGGCTGTATATCCTCCGC
CTTCGGGCACCAGGAGCCACGGTGATAATGGTTGCCAATAAGTGCGATAG
GTCAATGGGAGATTTCTCAGAGACTGCAAATCGAGTCGATGTACTCGTAA
AACGATTGCTGGAAGAATGGCAGGCCGAACGAGGCTTGAGCCGTGGTTTG
GTCCGAAATATTACGGAGATGAGACTGCTTGAGGGTGTAAGCCGCGTCAG
CTGCACTGACTACGGCGGAATCAGGGAATTGGTCTGGCGTATTTCAGCTC
AAGGTGCCACGATCATTCAGGTGCCACCCTCGTGGGATCTCGCCCTCAAG
GTGATTGATGCCCTGCGGGACGGCCAGGAACCAGTGCGGGCTGCCCGGGA
GCATCTACAGCTGTCCAGAACAAGGCTACGCGATAATGAAGGATATAATA
CGGTGGCACACACCTTCACGACAAAGGCGGAGCTGTTCCATGTCTTGAAA
AACATTGTGCGGCAAGTGTCACGCGGCGTGGAAGCGACGGGGCAGACGGC
AGCTGTTTCCAACTTGACAAGTGCTCTTAATGGTGCCCTTTGGATCAGGT
CGTCCACGAGGATATCATGAGATGGCTGTATATCCTCCGCCTTCGGGCAC
CAGGAGCCACGGTGATAATGGTTGCCAATAAGTGCGATAGGTCAATGGGA
GATTTCTCAGAGACTGCAAATCGAGTCGATGTACTCGTAAAACGATTGCT
GGAAGAATGGCAGGCCGAACGAGGCTTGAGCCGTGGTTTGGTCCGAAATA
TTACGGAGATGAGACTGCTTGAGGGTGTAAGCCGCGTCAGCTGCACTGAC
TACGGCGGAATCAGGGAATTGGTCTGGCGTATTTCAGCTCAAGGTGCCAC
GATCATTCAGGTGCCACCCTCGTGGGATCTCGCCCTCAAGGTGATTGATG
CCCTGCGGGACGGCCAGGAACCAGTGCGGGCTGCCCGGGAGCATCTACAG
CTGTCCAGAACAAGGCTACGCGATAATGAAGGATATAATACGGTGGCACA
CACCTTCACGACAAAGGCGGAGCTGTTCCATGTCTTGAAAAACATTGTGC
GGCAAGTGTCACGCGGCGTGGAAGCGACGGGGCAGACGGCAGCTGTTTCC
AACTTGACAAGTGCTCTTAATGGTGCCCTTTGGATCAGTGAATTTGCAGG
GAAAATCCTGACCATCGACAGCGGTGACTTAATCTTCCTAGATGTAAACT
GGCTCTCAAACGTTTTAAGTCCTATCATGAGCCACAAGCTGCACAGAGAA
AGGTTCAAATCGGAGGCCCTGTGCGTGCAGAGAGATTGAATTTGCAGGGA
AAATCCTGACCATCGACAGCGGTGACTTAATCTTCCTAGATGTAAACTGG
CTCTCAAACGTTTTAAGTCCTATCATGAGCCACAAGCTGCACAGAGAAAG
GTTCAAATCGGAGGCCCTGTGCGTGCAGAGAGAT
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