mRNA_H-elongata_contig15356.3532.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig15356.3532.1
Unique NamemRNA_H-elongata_contig15356.3532.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig15356.3532.1 vs. uniprot
Match: D7FVX5_ECTSI (LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVX5_ECTSI)

HSP 1 Score: 79.7 bits (195), Expect = 4.680e-13
Identity = 47/127 (37.01%), Postives = 66/127 (51.97%), Query Frame = 2 
Query:    2 GWPVCSKHPNSRMFLAPPEEARINDPLLPEA-ARSAPISGCDCRLDANGVLGIVLSRLGTVIDTRKEDPFERVNESE------RVKERMKACGC------CRDTWIHLRPKAWRVAVALGALSLTLF 343
            G P C+ H   RM+   P EARI DP+L +   R+AP + CDC       + +VL RLGT+IDT+K+DPF  ++  E      +     +A GC      C   +   RP AW+ A   G ++ TLF
Sbjct:  934 GGPACAIHARGRMYFKTPIEARIGDPILTDPDPRTAP-NVCDCYTTEGNAMRLVLERLGTIIDTQKDDPFGHLHHDEGGSAISQDNRGEEAGGCAAMSASCSRVFHAWRPLAWKTAAGFGTVAATLF 1059
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig15356.3532.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FVX5_ECTSI4.680e-1337.01LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus s... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig15356contigH-elongata_contig15356:1095..2737 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score71.6
Seed ortholog evalue3.6e-10
Seed eggNOG ortholog2880.D7FVX5
Preferred nameSLITRK2
GOsGO:0000902,GO:0000904,GO:0005575,GO:0005623,GO:0005886,GO:0007275,GO:0007399,GO:0007409,GO:0008150,GO:0009653,GO:0009987,GO:0016020,GO:0016021,GO:0016043,GO:0022008,GO:0030030,GO:0030154,GO:0030182,GO:0031175,GO:0031224,GO:0032501,GO:0032502,GO:0032989,GO:0032990,GO:0044087,GO:0044089,GO:0044425,GO:0044464,GO:0048468,GO:0048518,GO:0048522,GO:0048666,GO:0048667,GO:0048699,GO:0048731,GO:0048812,GO:0048856,GO:0048858,GO:0048869,GO:0050789,GO:0050793,GO:0050794,GO:0050803,GO:0050807,GO:0051094,GO:0051128,GO:0051130,GO:0051239,GO:0051240,GO:0051960,GO:0051962,GO:0051963,GO:0051965,GO:0061564,GO:0065007,GO:0065008,GO:0071840,GO:0071944,GO:0120036,GO:0120039,GO:2000026
EggNOG free text desc.positive regulation of synapse assembly
EggNOG OGs2CMPC@1,2QR6C@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons4
Model size837
Cds size471
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig15356.3532.1prot_H-elongata_contig15356.3532.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig15356 1467..2700 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929907.4846528-UTR-H-elongata_contig15356:1094..13441622929907.4846528-UTR-H-elongata_contig15356:1094..1344Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig15356 1095..1344 -
1691679203.7251246-UTR-H-elongata_contig15356:1094..13441691679203.7251246-UTR-H-elongata_contig15356:1094..1344Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig15356 1095..1344 -
1622929907.4982233-UTR-H-elongata_contig15356:1387..14661622929907.4982233-UTR-H-elongata_contig15356:1387..1466Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig15356 1388..1466 -
1691679203.7338495-UTR-H-elongata_contig15356:1387..14661691679203.7338495-UTR-H-elongata_contig15356:1387..1466Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig15356 1388..1466 -
1622929907.5486078-UTR-H-elongata_contig15356:2700..27371622929907.5486078-UTR-H-elongata_contig15356:2700..2737Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig15356 2701..2737 -
1691679203.767138-UTR-H-elongata_contig15356:2700..27371691679203.767138-UTR-H-elongata_contig15356:2700..2737Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig15356 2701..2737 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929907.513258-CDS-H-elongata_contig15356:1466..17771622929907.513258-CDS-H-elongata_contig15356:1466..1777Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15356 1467..1777 -
1691679203.7408009-CDS-H-elongata_contig15356:1466..17771691679203.7408009-CDS-H-elongata_contig15356:1466..1777Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15356 1467..1777 -
1622929907.5253353-CDS-H-elongata_contig15356:2327..24631622929907.5253353-CDS-H-elongata_contig15356:2327..2463Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15356 2328..2463 -
1691679203.751933-CDS-H-elongata_contig15356:2327..24631691679203.751933-CDS-H-elongata_contig15356:2327..2463Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15356 2328..2463 -
1622929907.5359619-CDS-H-elongata_contig15356:2676..27001622929907.5359619-CDS-H-elongata_contig15356:2676..2700Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15356 2677..2700 -
1691679203.7590346-CDS-H-elongata_contig15356:2676..27001691679203.7590346-CDS-H-elongata_contig15356:2676..2700Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15356 2677..2700 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig15356.3532.1

>prot_H-elongata_contig15356.3532.1 ID=prot_H-elongata_contig15356.3532.1|Name=mRNA_H-elongata_contig15356.3532.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=157bp
MFLAPPEEARINDPLLPEAARSAPISGCDCRLDANGVLGIVLSRLGTVID
TRKEDPFERVNESERVKERMKACGCCRDTWIHLRPKAWRVAVALGALSLT
LFCSATVPSITEANAMLLITSLSVVGLLLVAALPAVYVAYRDMIRNPPVS
HEGLTV*
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mRNA from alignment at H-elongata_contig15356:1095..2737-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig15356.3532.1 ID=mRNA_H-elongata_contig15356.3532.1|Name=mRNA_H-elongata_contig15356.3532.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1643bp|location=Sequence derived from alignment at H-elongata_contig15356:1095..2737- (Himanthalia elongata Himel1 dioecious)
GGGCTGGCCGGTGTGTTCAAAGCATCCGAATTCCCGCATGTTCCTGGCTC
CTCCAGAAGAGGTGCGACGATAAATTGTTTGCGTGTAAATGTGAGTTTAT
TGCCAAACCATCTTCACCGAAACTCTTCGTAAGGCACGCCTTCTGACCCA
TTTCCCTCAGTGGCTAGAAAATGTTTTCACCGACTCTCTTCGTAAGGCAT
GTCATTCTGCCTATTTATTTCAATGATTTCATTTTTGGTCTCATTTATTG
TCTCCCGACATTGAACGCACACAGGCAAGAATCAACGATCCTTTACTACC
CGAAGCAGCTCGATCTGCTCCCATAAGTGGGTGTGACTGCAGACTAGATG
CGAATGGAGTGCTCGGCATTGTTCTCAGCCGCCTTGGAACGGTGATCGAC
ACGAGGAAAGGTATGAAGGCTCATAGCGCTCATGATACTGGTATGGAGTT
AGTATTTCTCTGTGCCTCAAGGAAATGTGATTATTTTTGTCGCCCTCAAC
TCCTGAGGACAAGTTTTCACTGATGTTAAGTGTTTTTTGTAGGATCGAAC
CGTTATGTTGATTGTCAATTTAAACATACTAGATTAAATTGTATTTATGT
TGTTACCTTTGATCACACAGTATGAATATATCTATGCTGGTCATCATATA
TAGCAGTATAGTATGGATCAATCGGAAATGGTTGCGAATCCAACATCTTC
AAGGATAGCTCCCCATAAGGGGGGGGGTATTGGCAAAATAGCGTGGCGCC
CCCTTACGTGTCATGCCGGTTTGCGCATCTTAATGCGAATTGATAAAAAG
GGGAAATATATTTTCCCTATATCCGTTCGTGCCTGCGAATTTGATCGCAC
GAGACCAGTTCAGCCGTCGCGACTTGCGAAGCTCGCTCATTCTCCGAACC
CATACTGAATCTGGTATTGATACCTATCATCGCACCCTTTTCTCTCAACG
CTTTTCTTAGAGGATCCGTTCGAGAGAGTTAATGAGTCTGAGAGAGTCAA
GGAGCGCATGAAGGCGTGTGGCTGCTGCCGCGATACCTGGATTCACTTGC
GACCGAAGGCCTGGCGAGTCGCAGTAGCTCTCGGGGCATTGTCGCTGACA
CTTTTTTGTTCAGCTACGGTCCCGAGTATCACTGAAGCGAACGCTATGCT
GTTGATTACTTCTTTATCGGTGGTTGGACTCTTGCTTGTAGCGGCTCTAC
CCGCTGTATATGTCGCTTACCGAGACATGATTCGAAATCCGCCTGTTTCC
CACGAAGGTTTGACGGTTTAGTTGGGACGCTCGCGGTCATCGGTTTTTAA
GAGTAACCACCGTTCGTTCTGCTGTCGAAGAGAAGCGGGAAAAAATTGAA
CATTTTTTGGATGGCGAGAAGTTTGGGATTGGCAAGAGCTCTTAACATGT
TTATGTTCCCGGATTTAATGTATGTGTGAGCATGACATGTAGCAGAATAA
GGTTCGGCCGAACATGTTTTTTTGCGGTCACAGTTTTTAAGAGTTACCGC
CGTTGTGCTGTTGAAGAGAAAGGTGAATAAAAAAAACGACTGGCGAAACG
TTTGGCATTGACAGGATGTTCATATTATTTTTACCATCGGTTCCCCTCAG
CCTGCTGCATGTGTCCGTTGCTGCTATGTCTCTTTATTGCCGC
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Coding sequence (CDS) from alignment at H-elongata_contig15356:1095..2737-

>mRNA_H-elongata_contig15356.3532.1 ID=mRNA_H-elongata_contig15356.3532.1|Name=mRNA_H-elongata_contig15356.3532.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=942bp|location=Sequence derived from alignment at H-elongata_contig15356:1095..2737- (Himanthalia elongata Himel1 dioecious)
ATGTTCCTGGCTCCTCCAGAAGAGATGTTCCTGGCTCCTCCAGAAGAGGC
AAGAATCAACGATCCTTTACTACCCGAAGCAGCTCGATCTGCTCCCATAA
GTGGGTGTGACTGCAGACTAGATGCGAATGGAGTGCTCGGCATTGTTCTC
AGCCGCCTTGGAACGGTGATCGACACGAGGAAAGGCAAGAATCAACGATC
CTTTACTACCCGAAGCAGCTCGATCTGCTCCCATAAGTGGGTGTGACTGC
AGACTAGATGCGAATGGAGTGCTCGGCATTGTTCTCAGCCGCCTTGGAAC
GGTGATCGACACGAGGAAAGAGGATCCGTTCGAGAGAGTTAATGAGTCTG
AGAGAGTCAAGGAGCGCATGAAGGCGTGTGGCTGCTGCCGCGATACCTGG
ATTCACTTGCGACCGAAGGCCTGGCGAGTCGCAGTAGCTCTCGGGGCATT
GTCGCTGACACTTTTTTGTTCAGCTACGGTCCCGAGTATCACTGAAGCGA
ACGCTATGCTGTTGATTACTTCTTTATCGGTGGTTGGACTCTTGCTTGTA
GCGGCTCTACCCGCTGTATATGTCGCTTACCGAGACATGATTCGAAATCC
GCCTGTTTCCCACGAAGGTTTGACGGTTTAGAGGATCCGTTCGAGAGAGT
TAATGAGTCTGAGAGAGTCAAGGAGCGCATGAAGGCGTGTGGCTGCTGCC
GCGATACCTGGATTCACTTGCGACCGAAGGCCTGGCGAGTCGCAGTAGCT
CTCGGGGCATTGTCGCTGACACTTTTTTGTTCAGCTACGGTCCCGAGTAT
CACTGAAGCGAACGCTATGCTGTTGATTACTTCTTTATCGGTGGTTGGAC
TCTTGCTTGTAGCGGCTCTACCCGCTGTATATGTCGCTTACCGAGACATG
ATTCGAAATCCGCCTGTTTCCCACGAAGGTTTGACGGTTTAG
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