mRNA_H-elongata_contig15352.3531.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig15352.3531.1
Unique NamemRNA_H-elongata_contig15352.3531.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig15352.3531.1 vs. uniprot
Match: D7FKV3_ECTSI (GOLD domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKV3_ECTSI)

HSP 1 Score: 82.4 bits (202), Expect = 3.040e-14
Identity = 39/80 (48.75%), Postives = 58/80 (72.50%), Query Frame = 2 
Query:   68 ELAVIVNGVQELDTLLKEIQKKQDLEERTIAGRIKAADDNHISMEQSSVIETVVLVVIGVGQLVLVRRWFQGKGTLLKHW 307
            +LA+I   +  L  + +EI+  Q+LE   +  R  AA+DN+ SM QSSV+ET+VL+++G+GQ++ VR+WF GKGTLLK W
Sbjct:  172 DLAIITKEMDGLSKVFEEIKSFQELERMQLTQRKTAAEDNNASMVQSSVLETIVLLLVGIGQIIFVRKWFSGKGTLLKQW 251
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig15352.3531.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FKV3_ECTSI3.040e-1448.75GOLD domain-containing protein n=1 Tax=Ectocarpus ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig15352contigH-elongata_contig15352:3578..6211 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionTMP21-related
Ec32 orthologEc-17_001490.1
Exons4
Model size1221
Cds size279
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig15352.3531.1prot_H-elongata_contig15352.3531.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig15352 4477..5256 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929907.3609066-UTR-H-elongata_contig15352:3577..44761622929907.3609066-UTR-H-elongata_contig15352:3577..4476Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig15352 3578..4476 -
1691679203.6609533-UTR-H-elongata_contig15352:3577..44761691679203.6609533-UTR-H-elongata_contig15352:3577..4476Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig15352 3578..4476 -
1622929907.4263837-UTR-H-elongata_contig15352:5256..52701622929907.4263837-UTR-H-elongata_contig15352:5256..5270Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig15352 5257..5270 -
1691679203.7019145-UTR-H-elongata_contig15352:5256..52701691679203.7019145-UTR-H-elongata_contig15352:5256..5270Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig15352 5257..5270 -
1622929907.4393055-UTR-H-elongata_contig15352:6182..62111622929907.4393055-UTR-H-elongata_contig15352:6182..6211Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig15352 6183..6211 -
1691679203.7139888-UTR-H-elongata_contig15352:6182..62111691679203.7139888-UTR-H-elongata_contig15352:6182..6211Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig15352 6183..6211 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929907.37984-CDS-H-elongata_contig15352:4476..46251622929907.37984-CDS-H-elongata_contig15352:4476..4625Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15352 4477..4625 -
1691679203.670778-CDS-H-elongata_contig15352:4476..46251691679203.670778-CDS-H-elongata_contig15352:4476..4625Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15352 4477..4625 -
1622929907.3967195-CDS-H-elongata_contig15352:4866..49711622929907.3967195-CDS-H-elongata_contig15352:4866..4971Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15352 4867..4971 -
1691679203.6798627-CDS-H-elongata_contig15352:4866..49711691679203.6798627-CDS-H-elongata_contig15352:4866..4971Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15352 4867..4971 -
1622929907.4119518-CDS-H-elongata_contig15352:5231..52561622929907.4119518-CDS-H-elongata_contig15352:5231..5256Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15352 5232..5256 -
1691679203.6886868-CDS-H-elongata_contig15352:5231..52561691679203.6886868-CDS-H-elongata_contig15352:5231..5256Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15352 5232..5256 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig15352.3531.1

>prot_H-elongata_contig15352.3531.1 ID=prot_H-elongata_contig15352.3531.1|Name=mRNA_H-elongata_contig15352.3531.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=93bp
MDGGDDIGELAVIVNGVQELDTLLKEIQKKQDLEERTIAGRIKAADDNHI
SMEQSSVIETVVLVVIGVGQLVLVRRWFQGKGTLLKHWRTKN*
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mRNA from alignment at H-elongata_contig15352:3578..6211-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig15352.3531.1 ID=mRNA_H-elongata_contig15352.3531.1|Name=mRNA_H-elongata_contig15352.3531.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2634bp|location=Sequence derived from alignment at H-elongata_contig15352:3578..6211- (Himanthalia elongata Himel1 dioecious)
GATTCTGGACATTGTTAAGGACACCGAGGGTAGGTTGCTACATACGCACT
CCGTGATCCTATTGCGTCAATAATCTCATGGCGGTTCAAAGCTTGAGTCA
TAAAGGAATAGTTGACAACAACGTTATATGTTATAGGTCATAGGTCATAG
GATCATTTGTCGTAGCCATGTATAGGATAGATAGTATAAATACAGCTCTA
CAACTCTCGCTTATCCAAAGAGACCTACACTTGCCCCTACACCCTTGAAC
GGAAGTGTTCGATTCACAGCGCATCGAGGTTGGCATAAACTCTTACATAT
GGTTAAGCTTGGCATGGTGTGGTCCCCGCATTTATTATTTTTAAACATAT
GAACTGATTCCAACCCTCCGAACATCCACACCTTCTTAGCACCATGAGAG
GTGTAGTCCAGGGGACCAACTATCTTATGGTTCGAATGTGGACGTTTTAA
CTACATTTAAGCACAAAATGCTGTAATCATTGTCTAGAGTAATGTGAGCG
ATTCCCGAACACATACCGCAGCATACCTGAGTACAGGCTGCGGAACAAAA
TCAGCGATTTTATTTCGAAGGTATTAGCATAGAGGTAAATAGCTAATGAT
GTACCAGCATTTCGAACAACACCAACAACACTTGTAACAGGAGGAAGTTT
TTTCGACATATAACCTTAACGTTTTGCTCAGTGCATTGTAAAGACTTTCG
ATTGAATGAGCTTGAGGGATCGAGTTAAAATGGAAATGCGCAAATATTTG
TTGCGACATTCTATTAGTCATTCTATTAGTCATTCTATTAATAGTATCAT
GGTATTCGTGGGCATTATTCGTTTGTTCTCTTGAAAGAGCGTCAGTATCT
TGCTCTCTTCATACCGAGCAATCATTGTTCGCATGGGGGCATAATTGAAC
AATTGAACAATTGAACTTAATCATCTGCGCGTTTTACTCAGGCAACGACA
AGACGATGGACGGGGGAGACGACATTGGTGGTGAGAGGAAACAACCCCCA
GTACTAGATACCGACCCCTTCACATGCATGTCAAGTTATACTCCAACGCC
CGGTCTATGGTCTAATGCTGCCAGGCGACGTACAGTGATAGAAACGAAAG
TGTTCGTGCTTGCGAAAACCGGCGGGCCTACCGTCGGCTATAGGGAATTC
ATAATCTTGCGCACCACTCTCCGCAACCATTAGTATATTATATTAGATTA
TGATATATTTTCTTGGTGCTTGCCTCTGTTCTATTTCTAGAACTGGCTGT
CATCGTGAATGGTGTTCAAGAATTGGATACATTATTAAAGGAAATCCAGA
AAAAGCAGGATCTGGAGGAGAGGACAATTGCTGGAAGAATCAAAGGTGCA
CCCCAGATCGGATATAGTTTATAGCTTGCTCATACAACGTATAGAACGCG
GCATGATGAAATACCGTTATCCGATGGTCACACCAAAGCCAAATCGTCAG
CATTAAAAAGCTTAGGTTGGCCTCTCTACGTAACGTTCCTCGATGCTTCG
AATTACATTACCGAAATCACACTGGATCTTTCCACGATCATATATACTCA
TAATTTTGTCCCACTGACGTCTGTTCGTGACCACAGCCGCAGATGATAAT
CATATCAGCATGGAACAAAGCTCCGTGATAGAAACCGTCGTGCTCGTGGT
CATCGGTGTTGGCCAATTAGTCCTTGTCCGCCGGTGGTTTCAAGGAAAGG
GAACATTGCTGAAGCATTGGAGGACTAAGAACTGAAAGAGCAAAGGCAAG
GCGCGGCGACCAACCAGGGGGTTCCATGTGTCTTAGGCAAATGTCCCTTT
GGTAGTAACTAAGTACTGTTGTCCACGGAAGTTCCAATGCATGAAATGAT
AACGACGTATTTTTGTGAGATGTATCTACATGGCCCGTTGCTGTTTGTCC
TCTTAGGTTTACCGAAGCTAAGCTATCTTATCTATCTTACTTTTTGTTTG
CCCTTTGAACTTTGTAGTATTGCATCTTTGCGATGTACGTCACCACAGCT
TGACTCATGATATCTCTCTTGTTCGCGTCACCACAGCTCTATAGTAATTT
CACTCAATTTGATTAGAAATTTCTTAGAAAATGTCGTCGCGTTTACTTTT
CAGGCGGAGAAAGTTATATTTGATTTTCTGGGGATGGAGATCGCTTTGAT
ACCGAACATCCACGCCTTCTTAGCACCATGAGAGGTGCAGTCCAGGGGAC
CAACTATCGTCAGGTTCTAATGTGGACATTACTACCTCTGAGCATAAAAT
CGTCACGCGTGATTAATCATCATATATGGGGACGCCAAACCAGAGCCTAG
GAGGGTAAATTGTGTGTGGTGGTTATGAAGGGTTAGGCGCAGCATTGTAG
ATATTTCAGTTAAATTGGGAGGGAGAAAAGCGTTAAAAGGGTTCACATTT
TTACTACATTTAAGCACAAAATTGTCAGGTGTGATTCCTCATCATATAGG
GACGCCAAACCAGATTATGGCCTAACCTAGAGGGGAATGCTCGGTGGCTT
CATTTTGCTACGAATCATTTTCGAAGCGGCACAACTTTGGGGGTCAGCAT
TTTCCACTCTACGATAACGATAAATATTACCAAGGACCTTGCGATCGACC
CGTTTGGCTGTTGTGGAGGTTATAAGATAACACC
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Coding sequence (CDS) from alignment at H-elongata_contig15352:3578..6211-

>mRNA_H-elongata_contig15352.3531.1 ID=mRNA_H-elongata_contig15352.3531.1|Name=mRNA_H-elongata_contig15352.3531.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=558bp|location=Sequence derived from alignment at H-elongata_contig15352:3578..6211- (Himanthalia elongata Himel1 dioecious)
ATGGACGGGGGAGACGACATTGGTGATGGACGGGGGAGACGACATTGGTG
AACTGGCTGTCATCGTGAATGGTGTTCAAGAATTGGATACATTATTAAAG
GAAATCCAGAAAAAGCAGGATCTGGAGGAGAGGACAATTGCTGGAAGAAT
CAAAGAACTGGCTGTCATCGTGAATGGTGTTCAAGAATTGGATACATTAT
TAAAGGAAATCCAGAAAAAGCAGGATCTGGAGGAGAGGACAATTGCTGGA
AGAATCAAAGCCGCAGATGATAATCATATCAGCATGGAACAAAGCTCCGT
GATAGAAACCGTCGTGCTCGTGGTCATCGGTGTTGGCCAATTAGTCCTTG
TCCGCCGGTGGTTTCAAGGAAAGGGAACATTGCTGAAGCATTGGAGGACT
AAGAACTGACCGCAGATGATAATCATATCAGCATGGAACAAAGCTCCGTG
ATAGAAACCGTCGTGCTCGTGGTCATCGGTGTTGGCCAATTAGTCCTTGT
CCGCCGGTGGTTTCAAGGAAAGGGAACATTGCTGAAGCATTGGAGGACTA
AGAACTGA
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