mRNA_H-elongata_contig153405.3525.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig153405.3525.1 vs. uniprot
Match: D7FIX4_ECTSI (FAD_binding_3 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIX4_ECTSI) HSP 1 Score: 179 bits (454), Expect = 6.070e-51 Identity = 88/106 (83.02%), Postives = 96/106 (90.57%), Query Frame = 1
Query: 1 QVCVNGMSFSKRDSRWANAALVVSLSPQDVADDVSAMEGAGAGDSPLRGVRWQSAMERRAAEMGGGNLVVPVQRVTDIMTDSAGRSESLPRSSYRLGVRAGPLHEV 318
+VCVNGMSFSKR+S+WANAALVVSLSP+DVADDV A+EGA AG+ PLRGVRWQSAMERRAAEMGGGNLVVPVQRVTD M S+GR LP SSYRLGVRAGPLHE+
Sbjct: 463 EVCVNGMSFSKRESKWANAALVVSLSPKDVADDVFALEGAEAGNGPLRGVRWQSAMERRAAEMGGGNLVVPVQRVTDFMAGSSGRDADLPSSSYRLGVRAGPLHEL 568
BLAST of mRNA_H-elongata_contig153405.3525.1 vs. uniprot
Match: A0A6H5JX72_9PHAE (FAD_binding_3 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JX72_9PHAE) HSP 1 Score: 174 bits (441), Expect = 8.810e-49 Identity = 89/115 (77.39%), Postives = 97/115 (84.35%), Query Frame = 1
Query: 1 QVCVNGMSFSKRDSRWANAALVVSLSPQDVADDVSAMEGAGAGDSPLRGVRWQSAMERRAAEMGGGNL---------VVPVQRVTDIMTDSAGRSESLPRSSYRLGVRAGPLHEV 318
+VCVNGMSFSKR+S+WANAALVVSLSP+DVADDVSA+EGA AG+ PLRGVRWQSAMERRAAEMGGGNL VVPVQRVTD M S+GR LP SSYRLGVRAGPLHE+
Sbjct: 573 EVCVNGMSFSKRESKWANAALVVSLSPKDVADDVSALEGAEAGNGPLRGVRWQSAMERRAAEMGGGNLGWGAEGCSSVVPVQRVTDFMASSSGRDADLPSSSYRLGVRAGPLHEL 687
BLAST of mRNA_H-elongata_contig153405.3525.1 vs. uniprot
Match: A0A836CLD3_9STRA (DAO domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CLD3_9STRA) HSP 1 Score: 128 bits (322), Expect = 2.390e-32 Identity = 65/106 (61.32%), Postives = 76/106 (71.70%), Query Frame = 1
Query: 1 QVCVNGMSFSKRDSRWANAALVVSLSPQDVADDVSAMEGAGAGDSPLRGVRWQSAMERRAAEMGGGNLVVPVQRVTDIMTDSAGRSESLPRSSYRLGVRAGPLHEV 318
+VCVNGMSFSKR S+WAN+ALVV++SP D+ D GD PLRGV WQ MERRAA GGG+LV PVQ V D ++ +A S LP SSYRLGVRA PLHE+
Sbjct: 455 EVCVNGMSFSKRGSKWANSALVVNISPDDMRDF--------GGDGPLRGVYWQQEMERRAARAGGGDLVAPVQTVPDFLSGAAEPSAPLPTSSYRLGVRAAPLHEL 552
BLAST of mRNA_H-elongata_contig153405.3525.1 vs. uniprot
Match: A0A7S4G342_9EUGL (Hypothetical protein (Fragment) n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S4G342_9EUGL) HSP 1 Score: 110 bits (274), Expect = 3.930e-28 Identity = 56/108 (51.85%), Postives = 74/108 (68.52%), Query Frame = 1
Query: 1 QVCVNGMSFSKRDSRWANAALVVSLSPQDVADDVSAMEGAGAGDSP--LRGVRWQSAMERRAAEMGGGNLVVPVQRVTDIMTDSAGRSESLPRSSYRLGVRAGPLHEV 318
++C+NGMSFS+R S+WAN+A+VV++ P+D A D P L GV +Q AMERRAAE+GGG L VPVQR+TD + + LP SSYRLGV+A P+HE+
Sbjct: 17 ELCINGMSFSRRQSKWANSAIVVTVGPEDWAPFCPP-------DVPKALAGVYFQRAMERRAAELGGGGLTVPVQRLTDFLERKPSPDDDLPTSSYRLGVKAAPVHEL 117
BLAST of mRNA_H-elongata_contig153405.3525.1 vs. uniprot
Match: A0A7R9U8L2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U8L2_9STRA) HSP 1 Score: 108 bits (271), Expect = 3.000e-27 Identity = 58/106 (54.72%), Postives = 73/106 (68.87%), Query Frame = 1
Query: 1 QVCVNGMSFSKRDSRWANAALVVSLSPQDVADDVSAMEGAGAGDSPLRGVRWQSAMERRAAEMGGGNLVVPVQRVTDIMTDSAGRSESLPRSSYRLGVRAGPLHEV 318
++C+NGMSFS+RDSRWAN+ALVV++ + + +E G SPL GV +Q A ER AA MGGGN V PVQRV D + S R +LP SSYRLGVR+ LHE+
Sbjct: 59 ELCINGMSFSRRDSRWANSALVVTVGGESDSAFAGFVED---GASPLAGVDFQIACERAAARMGGGNFVAPVQRVPDFLEGSLSRG-TLPSSSYRLGVRSAALHEI 160
BLAST of mRNA_H-elongata_contig153405.3525.1 vs. uniprot
Match: A0A830C9E2_9LAMI (Uncharacterized protein cbei_0202 n=1 Tax=Phtheirospermum japonicum TaxID=374723 RepID=A0A830C9E2_9LAMI) HSP 1 Score: 107 bits (267), Expect = 1.140e-26 Identity = 58/106 (54.72%), Postives = 75/106 (70.75%), Query Frame = 1
Query: 1 QVCVNGMSFSKRDSRWANAALVVSLSPQDVADDVSAMEGAGAGDSPLRGVRWQSAMERRAAEMGGGNLVVPVQRVTDIMTDSAGRSESLPRSSYRLGVRAGPLHEV 318
++C+NGMSFS+R SRWANAA+VV++S +D D + G PL GV +Q A+ER+AA MGGGN VVPVQ VTD + D+ S+P SSYRLGV+A LHE+
Sbjct: 27 ELCINGMSFSRRSSRWANAAIVVNVSSKDF--DALNLNG------PLAGVEFQRALERKAAVMGGGNFVVPVQTVTDFL-DNRLTVTSVPSSSYRLGVKAANLHEL 123
BLAST of mRNA_H-elongata_contig153405.3525.1 vs. uniprot
Match: A0A0V0HRY7_SOLCH (Putative ovule protein (Fragment) n=1 Tax=Solanum chacoense TaxID=4108 RepID=A0A0V0HRY7_SOLCH) HSP 1 Score: 105 bits (262), Expect = 1.160e-26 Identity = 59/106 (55.66%), Postives = 75/106 (70.75%), Query Frame = 1
Query: 1 QVCVNGMSFSKRDSRWANAALVVSLSPQDVADDVSAMEGAGAGDSPLRGVRWQSAMERRAAEMGGGNLVVPVQRVTDIMTDSAGRSESLPRSSYRLGVRAGPLHEV 318
++C+NGMSFS+R S+WANAALVV++S +D A A++ G PL GV +Q ERRAA MGGGN VVPVQ VTD + D+ S+P SSYRLGV+A LHE+
Sbjct: 16 ELCINGMSFSRRSSKWANAALVVTVSSKDFA----ALDLHG----PLAGVEFQRMFERRAAAMGGGNFVVPVQTVTDFL-DNKLSGTSVPSSSYRLGVKATNLHEL 112
BLAST of mRNA_H-elongata_contig153405.3525.1 vs. uniprot
Match: A0A6U9W2Q8_9STRA (Hypothetical protein n=1 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A6U9W2Q8_9STRA) HSP 1 Score: 105 bits (263), Expect = 5.610e-26 Identity = 54/107 (50.47%), Postives = 72/107 (67.29%), Query Frame = 1
Query: 1 QVCVNGMSFSKRDSRWANAALVVSLSPQD-VADDVSAMEGAGAGDSPLRGVRWQSAMERRAAEMGGGNLVVPVQRVTDIMTDSAGRSESLPRSSYRLGVRAGPLHEV 318
+VCVNGMSFS+RDS+WAN+ALVV++ P D + D G + G+ +Q MERRA++ GGGNL VPVQR+TD S ++P SSYRLGV++ P HE+
Sbjct: 37 EVCVNGMSFSRRDSKWANSALVVTVDPDDKILDKYRTDHGV------MAGLEFQRDMERRASKFGGGNLTVPVQRMTDFCDSKV--SSTIPSSSYRLGVKSAPCHEI 135
BLAST of mRNA_H-elongata_contig153405.3525.1 vs. uniprot
Match: A0A7S1JFH0_9EUGL (Hypothetical protein (Fragment) n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S1JFH0_9EUGL) HSP 1 Score: 103 bits (258), Expect = 6.550e-26 Identity = 52/106 (49.06%), Postives = 71/106 (66.98%), Query Frame = 1
Query: 1 QVCVNGMSFSKRDSRWANAALVVSLSPQDVADDVSAMEGAGAGDSPLRGVRWQSAMERRAAEMGGGNLVVPVQRVTDIMTDSAGRSESLPRSSYRLGVRAGPLHEV 318
++C+NGMSFS+R S+WAN+ALVV++ P+D + EG L G+ +Q E+ AA+MGGGNL VPVQR+TD + E+LP SSYRLG +A PLH +
Sbjct: 13 ELCINGMSFSRRQSKWANSALVVTVGPKDW--EPFCPEGT---PKALAGIAFQQHFEQEAAKMGGGNLTVPVQRLTDFLEGRESDPETLPASSYRLGTKAAPLHRL 113
BLAST of mRNA_H-elongata_contig153405.3525.1 vs. uniprot
Match: A0A7S1GNM2_CYCTE (Hypothetical protein n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1GNM2_CYCTE) HSP 1 Score: 104 bits (259), Expect = 1.000e-25 Identity = 60/106 (56.60%), Postives = 70/106 (66.04%), Query Frame = 1
Query: 4 VCVNGMSFSKRDSRWANAALVVSLSPQDVADDVSAMEGAGAGDSPLRGVRWQSAMERRAAEMGGGNLVVPVQRVTDIMTDSAGR-SESLPRSSYRLGVRAGPLHEV 318
VCVNGMSFS+RDS WANAALVV++SP D E L G+ +Q MERRAA MGGGN VPVQR+TD + AGR SES P SSYRLG++ HE+
Sbjct: 1 VCVNGMSFSRRDSLWANAALVVTVSPNDKVLAPYKKE-----HGVLAGLAFQRDMERRAATMGGGNFTVPVQRLTDFV---AGRPSESSPSSSYRLGIKPAACHEI 98 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig153405.3525.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig153405.3525.1 >prot_H-elongata_contig153405.3525.1 ID=prot_H-elongata_contig153405.3525.1|Name=mRNA_H-elongata_contig153405.3525.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=100bp MSFSKRDSRWANAALVVSLSPQDVADDVSAMEGAGAGDSPLRGVRWQSAMback to top mRNA from alignment at H-elongata_contig153405:407..1496- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig153405.3525.1 ID=mRNA_H-elongata_contig153405.3525.1|Name=mRNA_H-elongata_contig153405.3525.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1090bp|location=Sequence derived from alignment at H-elongata_contig153405:407..1496- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig153405:407..1496- >mRNA_H-elongata_contig153405.3525.1 ID=mRNA_H-elongata_contig153405.3525.1|Name=mRNA_H-elongata_contig153405.3525.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=600bp|location=Sequence derived from alignment at H-elongata_contig153405:407..1496- (Himanthalia elongata Himel1 dioecious)back to top |