mRNA_H-elongata_contig153355.3523.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig153355.3523.1
Unique NamemRNA_H-elongata_contig153355.3523.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig153355.3523.1 vs. uniprot
Match: A0A6H5K972_9PHAE (DDE_Tnp_1_7 domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K972_9PHAE)

HSP 1 Score: 89.7 bits (221), Expect = 4.070e-18
Identity = 51/112 (45.54%), Postives = 65/112 (58.04%), Query Frame = 1
Query:  169 KKGEMSFARFGFLTFTQWKDSKLVRFLSTIHVTMGDFVP--------LPGGRKETLLQPSCRLNYNTYMGGVDLADQLNGYYQSLHRSKYFFWRRMFEQKFMQASSNAWLLY 480
            ++G   FAR   +   +W DSK V  +ST HV   D+ P        L  G   + LQP  RL+Y   MGGVD+ADQ    +Q  H+ K FFWRR+F+QKF QA SNA+LLY
Sbjct:  253 REGRHVFARSNHIVIIEWVDSKTVHLMSTKHVFDEDWNPVLQTKRAALNDGNSVSSLQPLARLDYVVRMGGVDVADQRLMTHQHGHKQKTFFWRRVFDQKFAQAISNAYLLY 364          
BLAST of mRNA_H-elongata_contig153355.3523.1 vs. uniprot
Match: UPI001EEA2101 (piggyBac transposable element-derived protein 4-like isoform X1 n=3 Tax=Silurus meridionalis TaxID=175797 RepID=UPI001EEA2101)

HSP 1 Score: 85.1 bits (209), Expect = 3.270e-16
Identity = 61/169 (36.09%), Postives = 89/169 (52.66%), Query Frame = 1
Query:    1 LLQSGTYVAMDNFFSSPVLFLCLLWHGVFAVGTLMDIHRGVCQAIWYWTTTKQTL*KKGEMSFARFGFLTFTQWKDSKLVRFLSTIHV-----TMGDFVPLPGGRKETL--LQPSCRLNYNTYMGGVDLADQLNGYYQSLHRSKYFFWRRMFEQKFMQ-ASSNAWLLYR 483
            +L +G  + +DNF++SP LF  LL   +FA GT+   + G  + I   T        +G   + R G L F +WKD+K V   STIH      T+   V    G+ + L    P C + YN YMGGVD++D L GYY  LH+++   W + F   F+  A  NA++L+R
Sbjct:  485 MLGTGYKLFVDNFYTSPELFQDLLKKNIFACGTIRPSNAGYPKTI---TNKLPNKAPRGTHRWLREGNLLFVEWKDTKEVHMCSTIHKGTESSTVQRKVKGKDGQWKNLDLPVPECVVEYNRYMGGVDVSDALIGYYTVLHKTRK--WYQSFFYHFVDIAIVNAFILHR 648          
BLAST of mRNA_H-elongata_contig153355.3523.1 vs. uniprot
Match: A0A6Q2X0X8_ESOLU (DDE_Tnp_1_7 domain-containing protein n=1 Tax=Esox lucius TaxID=8010 RepID=A0A6Q2X0X8_ESOLU)

HSP 1 Score: 84.0 bits (206), Expect = 7.940e-16
Identity = 55/144 (38.19%), Postives = 76/144 (52.78%), Query Frame = 1
Query:    1 LLQSGTYVAMDNFFSSPVLFLCLLWHGVFAVGTLMDIHRGVCQAIWYWTTTKQTL*KKGEMSFARFGFLTFTQWKDSKLVRFLSTIHV-----TMGDFVPLPGG--RKETLLQPSCRLNYNTYMGGVDLADQLNGYYQSLHRSK 411
            LL  G ++ MDNF++SP LFL LL     A GT+     G  +      + K    K+GE+ + R G L F +W D++ V   STIH      T+   V    G   +E++  P   L YN YMGGVD++D L GYY  LH++K
Sbjct:  334 LLGQGYHIFMDNFYTSPTLFLDLLTKKTLACGTIRTNRIGFPKTKINDLSRKA---KRGEIRWLRNGKLLFVKWMDTREVTMCSTIHTAYSNDTVNRRVKNADGVWGRESIPIPKAVLEYNKYMGGVDVSDALIGYYNVLHKTK 474          
BLAST of mRNA_H-elongata_contig153355.3523.1 vs. uniprot
Match: A0A7J5XTX8_DISMA (DDE_Tnp_1_7 domain-containing protein (Fragment) n=2 Tax=Notothenioidei TaxID=8205 RepID=A0A7J5XTX8_DISMA)

HSP 1 Score: 83.6 bits (205), Expect = 1.080e-15
Identity = 56/168 (33.33%), Postives = 89/168 (52.98%), Query Frame = 1
Query:    4 LQSGTYVAMDNFFSSPVLFLCLLWHGVFAVGTLMDIHRGVCQAIWYWTTTKQTL*KKGEMSFARFGFLTFTQWKDSKLVRFLSTIH-------VTMGDFVPLPGG-RKETLLQPSCRLNYNTYMGGVDLADQLNGYYQSLHRSKYFFWRRMFEQKFMQASSNAWLLYR 483
            L  G ++ +DNF++SP LF  L   G  A GT  D  + V ++     T+K     +G + + R   L F +W D++ V   STIH       VT   +    G  +KE ++ P C + YN YMGGVDL+DQL  YY S+H+    ++R +       A++N+++L++
Sbjct:  345 LGRGYHLFVDNFYTSPKLFTDLFARGFVACGTFRDNRKNVPKSKLNALTSKSP---RGSIRWLREKELLFVKWMDTREVSVCSTIHQAFNGDTVTRNVYAKETGKWQKENIMAPRCVVEYNKYMGGVDLSDQLIQYY-SVHKRSNRWYRTLLYHFIDIAATNSYILHK 508          
BLAST of mRNA_H-elongata_contig153355.3523.1 vs. uniprot
Match: A0A7J5XBP4_DISMA (DDE_Tnp_1_7 domain-containing protein n=1 Tax=Dissostichus mawsoni TaxID=36200 RepID=A0A7J5XBP4_DISMA)

HSP 1 Score: 83.6 bits (205), Expect = 1.180e-15
Identity = 56/168 (33.33%), Postives = 89/168 (52.98%), Query Frame = 1
Query:    4 LQSGTYVAMDNFFSSPVLFLCLLWHGVFAVGTLMDIHRGVCQAIWYWTTTKQTL*KKGEMSFARFGFLTFTQWKDSKLVRFLSTIH-------VTMGDFVPLPGG-RKETLLQPSCRLNYNTYMGGVDLADQLNGYYQSLHRSKYFFWRRMFEQKFMQASSNAWLLYR 483
            L  G ++ +DNF++SP LF  L   G  A GT  D  + V ++     T+K     +G + + R   L F +W D++ V   STIH       VT   +    G  +KE ++ P C + YN YMGGVDL+DQL  YY S+H+    ++R +       A++N+++L++
Sbjct:  583 LGRGYHLFVDNFYTSPKLFTDLFARGFVACGTFRDNRKNVPKSKLNALTSKSP---RGSIRWLREKELLFVKWMDTREVSVCSTIHQAFNGDTVTRNVYAKETGKWQKENIMAPRCVVEYNKYMGGVDLSDQLIQYY-SVHKRSNRWYRTLLYHFIDIAATNSYILHK 746          
BLAST of mRNA_H-elongata_contig153355.3523.1 vs. uniprot
Match: A0A671SE46_9TELE (DDE_Tnp_1_7 domain-containing protein n=1 Tax=Sinocyclocheilus anshuiensis TaxID=1608454 RepID=A0A671SE46_9TELE)

HSP 1 Score: 82.8 bits (203), Expect = 1.980e-15
Identity = 60/168 (35.71%), Postives = 88/168 (52.38%), Query Frame = 1
Query:    1 LLQSGTYVAMDNFFSSPVLFLCLLWHGVFAVGTLMDIHRGVCQAIWYWTTTKQTL*KKGEMSFARFGFLTFTQWKDSKLVRFLSTIHVTM-GDFVPL------PGGRKETLLQPSCRLNYNTYMGGVDLADQLNGYYQSLHRSKYFFWRRMFEQKFMQ-ASSNAWLLY 480
            LL  G ++ MDNF++S  LF  LL     A GT+    +G  +      + K    K+GE+ + R+G L F +W D++ V   STIH +  GD V         G R+  +  P   + YN YMGGVDL+D L GYY  LH++K   W + F   F+  A  N+++L+
Sbjct:  306 LLGQGYHIFMDNFYTSLTLFSDLLLKYTQACGTIRPNRQGFPKTKVNDLSRKA---KRGEIRWIRYGKLLFVKWMDTREVTMCSTIHKSYNGDTVNRRVKTAESGWRRHQVPVPVAVMEYNKYMGGVDLSDALIGYYNVLHKTKK--WYKTFFFHFIDIAVVNSYILH 468          
BLAST of mRNA_H-elongata_contig153355.3523.1 vs. uniprot
Match: A0A3P8ZAY9_ESOLU (DDE_Tnp_1_7 domain-containing protein n=1 Tax=Esox lucius TaxID=8010 RepID=A0A3P8ZAY9_ESOLU)

HSP 1 Score: 81.6 bits (200), Expect = 4.510e-15
Identity = 54/144 (37.50%), Postives = 76/144 (52.78%), Query Frame = 1
Query:    1 LLQSGTYVAMDNFFSSPVLFLCLLWHGVFAVGTLMDIHRGVCQAIWYWTTTKQTL*KKGEMSFARFGFLTFTQWKDSKLVRFLSTIHV-----TMGDFVPLPGG--RKETLLQPSCRLNYNTYMGGVDLADQLNGYYQSLHRSK 411
            LL  G ++ MDNF++SP LFL LL     + GT+     G  +      + K    K+GE+ + R G L F +W D++ V   STIH      T+   V    G   +E++  P   L YN YMGGVD++D L GYY  LH++K
Sbjct:  202 LLGQGYHIFMDNFYTSPTLFLDLLTKKTQSCGTIRTNRIGFPKTKINDLSRKA---KRGEIRWLRNGKLLFVKWMDTREVTMCSTIHTAYSNDTVNRRVKNADGVWGRESIPIPKAVLEYNKYMGGVDVSDALIGYYNVLHKTK 342          
BLAST of mRNA_H-elongata_contig153355.3523.1 vs. uniprot
Match: A0A6H5JC56_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JC56_9PHAE)

HSP 1 Score: 80.9 bits (198), Expect = 5.570e-15
Identity = 55/160 (34.38%), Postives = 74/160 (46.25%), Query Frame = 1
Query:    1 LLQSGTYVAMDNFFSSPVLFLCLLWHGVFAVGTLMDIHRGVCQAIWYWTTTKQTL*KKGEMSFARFGFLTFTQWKDSKLVRFLSTIHVTMGDFVPLPGGRKETLLQPSCRLNYNTYMGGVDLADQLNGYYQSLHRSKYFFWRRMFEQKFMQASSNAWLLY 480
            ++ SG  VAMDNFF+   L   L    +FAV T      GV  + + W+     + ++G+M                  +R   T      D      G K +  QP  R  +   MGGVD+ADQ  G +   HR   FFWRR+F+QKF QA SNAW L+
Sbjct:  222 IIGSGVTVAMDNFFTGAALLRYLATRDIFAVRTPRGNRTGVDLSNYIWSKEGMKVTERGQM------------------LRPARTSSKRAADH----NGEKVSSSQPLARKEHVKNMGGVDVADQWLGAHAHTHRPMTFFWRRVFDQKFSQAVSNAWFLF 359          
BLAST of mRNA_H-elongata_contig153355.3523.1 vs. uniprot
Match: A0A8M3AW26_DANRE (piggyBac transposable element-derived protein 4-like n=1 Tax=Danio rerio TaxID=7955 RepID=A0A8M3AW26_DANRE)

HSP 1 Score: 80.9 bits (198), Expect = 6.810e-15
Identity = 56/168 (33.33%), Postives = 87/168 (51.79%), Query Frame = 1
Query:    4 LQSGTYVAMDNFFSSPVLFLCLLWHGVFAVGTLMDIHRGVCQAIWYWTTTKQTL*KKGEMSFARFGFLTFTQWKDSKLVRFLSTIHVTM-GDFVPLPGGRKET-------LLQPSCRLNYNTYMGGVDLADQLNGYYQSLHRSKYFFWRRMFEQKFMQASSNAWLLYR 483
            L  G ++ +DNF++SP LF  L   G  A GT  D  + V +      T++     +G + + R   L F +W D++ V   STIH    GD V      KET       +  P C ++YN YMGGVDL+DQL  YY S+H+    ++R +       A++N+++L++
Sbjct:  160 LGRGYHLYVDNFYTSPKLFRDLYASGFVACGTFKDSRKNVRETKQNALTSRSP---RGSIRWIRQNKLLFVKWMDTREVSVCSTIHKAFDGDTVTRNVHDKETGSWQIKNIASPRCVVDYNKYMGGVDLSDQLLQYY-SVHKRSNRWYRTLLYHFIDIAATNSYILHK 323          
BLAST of mRNA_H-elongata_contig153355.3523.1 vs. uniprot
Match: A0A8B8BXT0_CRAVI (piggyBac transposable element-derived protein 4-like n=1 Tax=Crassostrea virginica TaxID=6565 RepID=A0A8B8BXT0_CRAVI)

HSP 1 Score: 80.9 bits (198), Expect = 9.210e-15
Identity = 59/157 (37.58%), Postives = 81/157 (51.59%), Query Frame = 1
Query:   10 SGTYVAMDNFFSSPVLFLCLLWHGVFAVGTLMDIHRGVCQAIWYWTTTKQTL*KKGEMSFARFGFLTFTQWKDSKLVRFLSTIHVTMGDFVPLPGGRKETLLQ-PSCRLNYNTYMGGVDLADQLNGYYQSLHRSKYFFWRRMFEQKFMQASSNAWLL 477
            S   V MDNF++SP L + L   GV A GT+    RG+ + +      K  L  K E   A+   LTFT WKD+K V  LS  H             + T++Q P    +Y  +M GVDL DQ+ GYY   HRSK + WRR+F    M ++ NA+++
Sbjct:  304 SNIRVYMDNFYTSPDLLMDLHVRGVMACGTVRANRRGLPKDL---LPNKINL-NKHEFKIAQKDNLTFTVWKDTKPVCVLSNFHDPNHRGQVTRRAAENTVVQVPRLLSDYQKHMKGVDLCDQMIGYYMLNHRSKKW-WRRIFFYLMMASAHNAYIV 455          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig153355.3523.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K972_9PHAE4.070e-1845.54DDE_Tnp_1_7 domain-containing protein (Fragment) n... [more]
UPI001EEA21013.270e-1636.09piggyBac transposable element-derived protein 4-li... [more]
A0A6Q2X0X8_ESOLU7.940e-1638.19DDE_Tnp_1_7 domain-containing protein n=1 Tax=Esox... [more]
A0A7J5XTX8_DISMA1.080e-1533.33DDE_Tnp_1_7 domain-containing protein (Fragment) n... [more]
A0A7J5XBP4_DISMA1.180e-1533.33DDE_Tnp_1_7 domain-containing protein n=1 Tax=Diss... [more]
A0A671SE46_9TELE1.980e-1535.71DDE_Tnp_1_7 domain-containing protein n=1 Tax=Sino... [more]
A0A3P8ZAY9_ESOLU4.510e-1537.50DDE_Tnp_1_7 domain-containing protein n=1 Tax=Esox... [more]
A0A6H5JC56_9PHAE5.570e-1534.38Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A8M3AW26_DANRE6.810e-1533.33piggyBac transposable element-derived protein 4-li... [more]
A0A8B8BXT0_CRAVI9.210e-1537.58piggyBac transposable element-derived protein 4-li... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig153355contigH-elongata_contig153355:650..1453 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeOpisthokonta
Seed ortholog score60.5
Seed ortholog evalue5.5e-07
Seed eggNOG ortholog7955.ENSDARP00000127043
EggNOG free text desc.Transposase IS4
EggNOG OGs28PUT@1,2QWHD@2759,38EA4@33154
COG Functional cat.S
Best tax levelOpisthokonta
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size489
Cds size309
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig153355.3523.1prot_H-elongata_contig153355.3523.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig153355 830..1453 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929906.5756805-UTR-H-elongata_contig153355:649..8291622929906.5756805-UTR-H-elongata_contig153355:649..829Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig153355 650..829 +
1691679203.3316283-UTR-H-elongata_contig153355:649..8291691679203.3316283-UTR-H-elongata_contig153355:649..829Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig153355 650..829 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929906.5919979-CDS-H-elongata_contig153355:829..9391622929906.5919979-CDS-H-elongata_contig153355:829..939Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig153355 830..939 +
1691679203.3586102-CDS-H-elongata_contig153355:829..9391691679203.3586102-CDS-H-elongata_contig153355:829..939Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig153355 830..939 +
1622929906.604071-CDS-H-elongata_contig153355:1254..14531622929906.604071-CDS-H-elongata_contig153355:1254..1453Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig153355 1255..1453 +
1691679203.3768709-CDS-H-elongata_contig153355:1254..14531691679203.3768709-CDS-H-elongata_contig153355:1254..1453Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig153355 1255..1453 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig153355.3523.1

>prot_H-elongata_contig153355.3523.1 ID=prot_H-elongata_contig153355.3523.1|Name=mRNA_H-elongata_contig153355.3523.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=103bp
MSFARFGFLTFTQWKDSKLVRFLSTIHVTMGDFVPLPGGRKETLLQPSCR
LNYNTYMGGVDLADQLNGYYQSLHRSKYFFWRRMFEQKFMQASSNAWLLY
RW*
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mRNA from alignment at H-elongata_contig153355:650..1453+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig153355.3523.1 ID=mRNA_H-elongata_contig153355.3523.1|Name=mRNA_H-elongata_contig153355.3523.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=804bp|location=Sequence derived from alignment at H-elongata_contig153355:650..1453+ (Himanthalia elongata Himel1 dioecious)
CTTCTGCAATCTGGTACCTACGTCGCCATGGACAACTTCTTTTCTTCGCC CGTCCTGTTTCTGTGCCTGCTCTGGCACGGGGTTTTCGCTGTGGGCACCC TGATGGACATTCACCGGGGAGTTTGCCAGGCGATTTGGTATTGGACCACC ACCAAGCAAACCCTGTAAAAGAAGGGAGAAATGTCTTTCGCGAGATTCGG GTTCTTGACCTTCACCCAGTGGAAGGACTCCAAGCTTGTTCGGTTCCTCT CCACCATCCATGTGACGATGGGAGACTTTGTCCCACTTCCGTACAGGTGA GTATAGGTGATACCTGCGTACACTCAATTTCTGGTCCCCTGTATTTCTTC AAGCCTATAATTTACTTTCTTGGCCTTGGGTTTTCATACTCCTTCGGCTA GTATAAGCCCACTTCAACTGCCTTCAGGAGGAAACGGCAGTTTTTCTTTT TTTTCAGTCGTTGCATAGCCAACTCACATTATTCTGTTGTTGTTTTTTTA CTCAGCCGCAGGTGTTACCTGTCCACACTAACAAACACCCGGCCTAACCC CCCCCTCCCCTCTCCCGCGATTCCTCCTTTTGTTTCTCGAAGTTAATTTG TGTAGGGGGGGGAGGAAAGAGACTCTACTGCAGCCGAGTTGTCGGCTCAA TTACAACACCTACATGGGTGGTGTTGACCTAGCCGACCAACTCAACGGCT ACTACCAATCCCTCCACAGGTCCAAGTACTTTTTTTGGAGGCGCATGTTC GAACAGAAGTTTATGCAGGCCTCCTCAAACGCGTGGTTGCTTTACAGGTG GTAG
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Coding sequence (CDS) from alignment at H-elongata_contig153355:650..1453+

>mRNA_H-elongata_contig153355.3523.1 ID=mRNA_H-elongata_contig153355.3523.1|Name=mRNA_H-elongata_contig153355.3523.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=618bp|location=Sequence derived from alignment at H-elongata_contig153355:650..1453+ (Himanthalia elongata Himel1 dioecious)
ATGTCTTTCGCGAGATTCGGGTTCTTGACCTTCACCCAGTGGAAGGACTC
CAAGCTTGTTCGGTTCCTCTCCACCATCCATGTGACGATGGGAGACTTTG
TCCCACTTCCATGTCTTTCGCGAGATTCGGGTTCTTGACCTTCACCCAGT
GGAAGGACTCCAAGCTTGTTCGGTTCCTCTCCACCATCCATGTGACGATG
GGAGACTTTGTCCCACTTCCGGGGGGGAGGAAAGAGACTCTACTGCAGCC
GAGTTGTCGGCTCAATTACAACACCTACATGGGTGGTGTTGACCTAGCCG
ACCAACTCAACGGCTACTACCAATCCCTCCACAGGTCCAAGTACTTTTTT
TGGAGGCGCATGTTCGAACAGAAGTTTATGCAGGCCTCCTCAAACGCGTG
GTTGCTTTACAGGTGGTAGGGGGGGGAGGAAAGAGACTCTACTGCAGCCG
AGTTGTCGGCTCAATTACAACACCTACATGGGTGGTGTTGACCTAGCCGA
CCAACTCAACGGCTACTACCAATCCCTCCACAGGTCCAAGTACTTTTTTT
GGAGGCGCATGTTCGAACAGAAGTTTATGCAGGCCTCCTCAAACGCGTGG
TTGCTTTACAGGTGGTAG
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