mRNA_H-elongata_contig153317.3520.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig153317.3520.1 vs. uniprot
Match: A0A6H5KLY3_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLY3_9PHAE) HSP 1 Score: 68.6 bits (166), Expect = 1.080e-11 Identity = 32/85 (37.65%), Postives = 55/85 (64.71%), Query Frame = 1
Query: 1 PMERQWKMVLKIIQYLLSNKYLGLTFERGSGFEMSLWTDSNYAEKANDTRSVSGVAIILYFALVGWSRLTQRVIALSTTEDDYIS 255
P +R W + KI+ YL +YLG+T++RGSG ++++ D++YA+ D RSVSG+A + +V Q +++L +TE +YI+
Sbjct: 175 PAKRHWDAIQKILGYLTGTRYLGITYQRGSGLGLAVYVDASYAD-TEDRRSVSGLATTVGGTVVSHGSKMQTIVSLYSTEAEYIA 258
BLAST of mRNA_H-elongata_contig153317.3520.1 vs. uniprot
Match: A0A6H5L8G9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L8G9_9PHAE) HSP 1 Score: 65.5 bits (158), Expect = 7.550e-11 Identity = 32/87 (36.78%), Postives = 52/87 (59.77%), Query Frame = 1
Query: 1 PMERQWKMVLKIIQYLLSNKYLGLTFERGSGFEMS--LWTDSNYAEKANDTRSVSGVAIILYFALVGWSRLTQRVIALSTTEDDYIS 255
P WK K++ YLL +L L F+R S ++ ++ D+++A KA D RSVSG + + LV W+ TQ+ +A ST+E +Y++
Sbjct: 60 PKLSHWKAAPKVLNYLLGTAHLSLNFKRDSSVDVGTLVYVDADFASKATDRRSVSGALVFVAGMLVVWTSRTQKCVAQSTSEAEYLA 146
BLAST of mRNA_H-elongata_contig153317.3520.1 vs. uniprot
Match: A0A6H5KPV1_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPV1_9PHAE) HSP 1 Score: 66.2 bits (160), Expect = 8.580e-11 Identity = 33/87 (37.93%), Postives = 52/87 (59.77%), Query Frame = 1
Query: 1 PMERQWKMVLKIIQYLLSNKYLGLTFERGSGFEMS--LWTDSNYAEKANDTRSVSGVAIILYFALVGWSRLTQRVIALSTTEDDYIS 255
P WK KI+ YLL +L L F+R S ++ ++ D+++A KA D RSVSG + + LV W+ TQ+ +A ST+E +Y++
Sbjct: 489 PKLSHWKAAQKILNYLLGTAHLSLNFKRDSSVDVGTLVYVDADFASKATDRRSVSGALVFVAGMLVVWTSRTQKCVAQSTSEAEYLA 575
BLAST of mRNA_H-elongata_contig153317.3520.1 vs. uniprot
Match: A0A6H5JMV5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMV5_9PHAE) HSP 1 Score: 65.5 bits (158), Expect = 8.840e-11 Identity = 32/82 (39.02%), Postives = 49/82 (59.76%), Query Frame = 1
Query: 16 WKMVLKIIQYLLSNKYLGLTFERG--SGFEMSLWTDSNYAEKANDTRSVSGVAIILYFALVGWSRLTQRVIALSTTEDDYIS 255
WK L I+ Y+ ++G+ FERG +G + ++ D++Y KA + RSVSG +I V W TQ+ +ALSTTE Y++
Sbjct: 94 WKAALGILGYVRRTSWMGIAFERGVVTGMSVQVFVDADYTSKATEHRSVSGGRVICGGGCVTWFSRTQKCVALSTTETQYVA 175
BLAST of mRNA_H-elongata_contig153317.3520.1 vs. uniprot
Match: A0A225UQG5_9STRA (Retrovirus-related pol Polyprotein n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225UQG5_9STRA) HSP 1 Score: 63.9 bits (154), Expect = 4.570e-10 Identity = 29/85 (34.12%), Postives = 55/85 (64.71%), Query Frame = 1
Query: 1 PMERQWKMVLKIIQYLLSNKYLGLTFERGSGFEMSLWTDSNYAEKANDTRSVSGVAIILYFALVGWSRLTQRVIALSTTEDDYIS 255
P E W +K+++YLL K + +T + G E++ ++D+++A +D RSVSG+ +++ A V W +Q+ +ALS+TE +Y++
Sbjct: 155 PGEAHWNAGIKVVRYLLKTKKVAITSDGLLGTELTAYSDADWAGNRDDRRSVSGMVLMMCDAPVVWRSTSQKTVALSSTEAEYMA 239
BLAST of mRNA_H-elongata_contig153317.3520.1 vs. uniprot
Match: A0A6H5JW47_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JW47_9PHAE) HSP 1 Score: 63.2 bits (152), Expect = 4.610e-10 Identity = 32/87 (36.78%), Postives = 51/87 (58.62%), Query Frame = 1
Query: 1 PMERQWKMVLKIIQYLLSNKYLGLTFERGSGFEMS--LWTDSNYAEKANDTRSVSGVAIILYFALVGWSRLTQRVIALSTTEDDYIS 255
P WK KI+ YLL +L L F+R S ++ ++ +++A KA D RSVSG + + LV W+ TQ+ +A ST+E +Y++
Sbjct: 43 PKLSHWKAAQKILNYLLGTAHLSLNFKRDSSVDVGTLVYVAADFASKATDRRSVSGALVFVAGMLVVWTSRTQKCVAQSTSEAEYLA 129
BLAST of mRNA_H-elongata_contig153317.3520.1 vs. uniprot
Match: A0A6L2PC32_TANCI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Tanacetum cinerariifolium TaxID=118510 RepID=A0A6L2PC32_TANCI) HSP 1 Score: 63.9 bits (154), Expect = 5.770e-10 Identity = 30/85 (35.29%), Postives = 54/85 (63.53%), Query Frame = 1
Query: 7 ERQWKMVLKIIQYLLSNKYLGLTFE--RGSGFEMSLWTDSNYAEKANDTRSVSGVAIILYFALVGWSRLTQRVIALSTTEDDYIS 255
+ W+ V I++YL +GL +E RG+ +++ + DS+YA+ N RS++G A +++ +V W + Q V+ALSTTE +Y++
Sbjct: 1785 KNHWEAVKWILKYLRGTANVGLVYETNRGNYVDVTCFVDSDYAKDPNKGRSITGYAFLVHGCVVSWKEMLQHVVALSTTEVEYMA 1869
BLAST of mRNA_H-elongata_contig153317.3520.1 vs. uniprot
Match: A0A5B6VMY0_9ROSI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Gossypium australe TaxID=47621 RepID=A0A5B6VMY0_9ROSI) HSP 1 Score: 62.4 bits (150), Expect = 1.070e-9 Identity = 29/85 (34.12%), Postives = 49/85 (57.65%), Query Frame = 1
Query: 1 PMERQWKMVLKIIQYLLSNKYLGLTFERGSGFEMSLWTDSNYAEKANDTRSVSGVAIILYFALVGWSRLTQRVIALSTTEDDYIS 255
P + + ++++YL G+ +++G EM +TDS+YAE D++S SG A ++ V WS QR+I LSTTE +++
Sbjct: 62 PTQLHFAAAKRVLRYLKGTTDYGVFYKKGGASEMVAYTDSDYAEDKEDSKSTSGYAFMMCGGAVAWSSRKQRIITLSTTEAKFVA 146
BLAST of mRNA_H-elongata_contig153317.3520.1 vs. uniprot
Match: A0A5N6LXA4_9ASTR (PI-PLC Y-box domain-containing protein n=1 Tax=Mikania micrantha TaxID=192012 RepID=A0A5N6LXA4_9ASTR) HSP 1 Score: 62.8 bits (151), Expect = 1.420e-9 Identity = 29/85 (34.12%), Postives = 51/85 (60.00%), Query Frame = 1
Query: 1 PMERQWKMVLKIIQYLLSNKYLGLTFERGSGFEMSLWTDSNYAEKANDTRSVSGVAIILYFALVGWSRLTQRVIALSTTEDDYIS 255
P E ++ +I++Y+ + GLT+ R + ++ ++ DS+YA +D +S SG IL A V WS Q ++ALS+TE +Y++
Sbjct: 436 PREEHLQVSKRILRYVKATYDYGLTYARNASLKLKVYMDSDYARDVDDRKSTSGYVCILSNAAVSWSSQKQEIVALSSTEAEYVA 520
BLAST of mRNA_H-elongata_contig153317.3520.1 vs. uniprot
Match: A0A6L2JGK7_TANCI (Integrase catalytic domain-containing protein n=1 Tax=Tanacetum cinerariifolium TaxID=118510 RepID=A0A6L2JGK7_TANCI) HSP 1 Score: 62.8 bits (151), Expect = 1.430e-9 Identity = 31/87 (35.63%), Postives = 54/87 (62.07%), Query Frame = 1
Query: 1 PMERQWKMVLKIIQYLLSNKYLGLTF--ERGSGFEMSLWTDSNYAEKANDTRSVSGVAIILYFALVGWSRLTQRVIALSTTEDDYIS 255
P + W+ V I++YL +GL + RG+ +++ + +SNYA+ N RS+SG A +++ +V W + Q V+ALSTTE +Y++
Sbjct: 685 PGKNHWEAVKWILKYLRGTINVGLVYGTNRGNHVDVTSFVNSNYAKDPNKGRSISGYAFLVHGYVVSWKAMLQHVVALSTTEAEYMA 771 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig153317.3520.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig153317.3520.1 >prot_H-elongata_contig153317.3520.1 ID=prot_H-elongata_contig153317.3520.1|Name=mRNA_H-elongata_contig153317.3520.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=84bp MERQWKMVLKIIQYLLSNKYLGLTFERGSGFEMSLWTDSNYAEKANDTRSback to top mRNA from alignment at H-elongata_contig153317:1075..1329- Legend: UTRCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig153317.3520.1 ID=mRNA_H-elongata_contig153317.3520.1|Name=mRNA_H-elongata_contig153317.3520.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=255bp|location=Sequence derived from alignment at H-elongata_contig153317:1075..1329- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig153317:1075..1329- >mRNA_H-elongata_contig153317.3520.1 ID=mRNA_H-elongata_contig153317.3520.1|Name=mRNA_H-elongata_contig153317.3520.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=504bp|location=Sequence derived from alignment at H-elongata_contig153317:1075..1329- (Himanthalia elongata Himel1 dioecious)back to top |