mRNA_H-elongata_contig153266.3515.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig153266.3515.1 vs. uniprot
Match: D8LL82_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LL82_ECTSI) HSP 1 Score: 318 bits (815), Expect = 5.500e-104 Identity = 165/260 (63.46%), Postives = 196/260 (75.38%), Query Frame = 1
Query: 1 MWRALTITRPTIIVR---HLLVHKRSLQVYTCGEGFLGCLGHGDFAPREYALPVEALAHKDVRCISAGWTHSAAVCAD-GELLVWGRPFDMKQPLRIWNIQRFLPFVVSVINSVASKRELLSRPVAMPIGSPQHQPITSLSPTAGGKGPTPSAACDVPSPPVKAVSVACSAALTVVLGDDGRVYCMGYNRWGQCGQGSQNVFTIFEPLRVGGQELDNERVTSVAVGFQQVLVLCESGRVYGWGKSLRGQLGIGADMVELP 768
M RAL TR ++ R H KR+L VYT GEGFLG LGHGDF+ RE ALPV ALA +D+RC+SAGWTHSAAVC D GE+LVWGRPFD+KQPLRI IQR PFVV+ IN++AS RE+L PV++P+ + T+ + TA PS ++A SVACSAALTVVLG+DG+VYCMGYNRWGQCGQG NVFT+FEPLRVGG+ L+ E V +AVGFQQVLVLCESGRV+GWGK LRGQLG+G +M+ELP
Sbjct: 1 MRRALQATRSSLPSRPRHHHQSRKRALHVYTHGEGFLGALGHGDFSAREQALPVAALASRDLRCVSAGWTHSAAVCRDTGEVLVWGRPFDLKQPLRINRIQRLFPFVVTAINALASSREVLPSPVSVPLMAEPAAASTASTVTAALHDARPSLHFPPTPSSLRAKSVACSAALTVVLGEDGKVYCMGYNRWGQCGQGPDNVFTVFEPLRVGGRALEREAVVKLAVGFQQVLVLCESGRVFGWGKGLRGQLGVGGEMMELP 260
BLAST of mRNA_H-elongata_contig153266.3515.1 vs. uniprot
Match: A0A6H5JG88_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JG88_9PHAE) HSP 1 Score: 308 bits (790), Expect = 3.170e-100 Identity = 163/261 (62.45%), Postives = 197/261 (75.48%), Query Frame = 1
Query: 1 MWRALTITRPTIIVR---HLLVHKRSLQVYTCGEGFLGCLGHGDFAPREYALPVEALAHKDVRCISAGWTHSAAVCAD-GELLVWGRPFDMKQPLRIWNIQRFLPFVVSVINSVASKRELLSRPVAMPIGSPQHQPITSLSPTAGGKGPTPSAACDVPSPP-VKAVSVACSAALTVVLGDDGRVYCMGYNRWGQCGQGSQNVFTIFEPLRVGGQELDNERVTSVAVGFQQVLVLCESGRVYGWGKSLRGQLGIGADMVELP 768
M RAL TR ++ R H KR+L VYT GEGFLG LGHGDF+ RE LPV ALA +D+RC SAGWTHSAAVC D GE+LVWGRPFD+KQPLRI IQR PFVV+ IN++AS RE+L PV +P+ + T+ + TA PS+ +P+P ++A SVACSAALTVVLG+DG+VYCMGYNRWGQCGQG +N FT+FEPLRVGG+ L+ E+V +AVG QQVLVLCESGRV+GWGK LRGQLG+G + +ELP
Sbjct: 17 MRRALQATRSSLPSRPRHHHQSRKRALHVYTHGEGFLGALGHGDFSAREETLPVAALASRDLRCASAGWTHSAAVCRDTGEVLVWGRPFDLKQPLRINRIQRLFPFVVTAINALASSREVLPSPVPVPLIAKPSAASTASTITAAFHDARPSS-YSLPAPSSLRANSVACSAALTVVLGEDGKVYCMGYNRWGQCGQGPENEFTVFEPLRVGGRALEREQVVKLAVGLQQVLVLCESGRVFGWGKGLRGQLGVGDETMELP 276
BLAST of mRNA_H-elongata_contig153266.3515.1 vs. uniprot
Match: A0A196SGG2_BLAHN (Ankyrin repeat-containing protein n=1 Tax=Blastocystis sp. subtype 1 (strain ATCC 50177 / NandII) TaxID=478820 RepID=A0A196SGG2_BLAHN) HSP 1 Score: 132 bits (332), Expect = 1.970e-32 Identity = 88/251 (35.06%), Postives = 125/251 (49.80%), Query Frame = 1
Query: 28 PTIIVRHLL-VHKRSLQVYTCGEGFLGCLGHGDFAPREYALPVEALAHKDVRCISAGWTHSAAVCADGELLVWGRPFDMKQPLRIWNIQRFLPFVVSVINSVASKRELLSRPVAMPIGSPQHQPITSLSPTAGGKGPTPSAACDVPSPPVKAVSVACSAALTVVLGDDGRVYCMGYNRWGQCGQGSQNVFTIFEPLRVGGQELDNERV-TSVAVGFQQVLVLCESGRVYGWGKSLRGQLGIG-ADMVELPV 771
P + VR L V SL VYT G+G +G LGH D+ REY V++L + + I+ GW H+ V DGE++++GR D++ + N+ +LP V+ N+ + +R S+ P GK V VA S AL+ L D +Y GYNR+GQCG ++V ++ P +V LD + + +A GFQ LCESGRVY WGK+ GQLG G DM P+
Sbjct: 18 PPLSVRLLRSVSTESLSVYTYGKGAIGALGHNDYNDREYPCRVDSLEGRGIHKIACGWAHNCLVDGDGEMVIFGRTQDVRNIIGAGNMISYLPKVIRSFNNFFKNTVIETR-------------FPSVLPIEDGK----------------CVDVAASMALSFCLTDTHHIYAYGYNRYGQCGVDMKDV-NLYAPKQV---MLDEDEIPVKLACGFQHACCLCESGRVYAWGKANHGQLGRGDVDMTFKPL 235
BLAST of mRNA_H-elongata_contig153266.3515.1 vs. uniprot
Match: A0A5D6XTS7_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XTS7_9STRA) HSP 1 Score: 124 bits (311), Expect = 1.660e-29 Identity = 81/235 (34.47%), Postives = 113/235 (48.09%), Query Frame = 1
Query: 73 QVYTCGEGFLGCLGHGDFAPREYALPVEALAHKDVRCISAGWTHSAAVCADGELLVWGRPFDMKQPLRIWNIQRFLPFVVSVINSVASKR---ELLSRPVAMPIGSPQHQPITSLSPTAGGKGPTPSAACDVPSPPVKAVSVACSAALTVVLGDDGRVYCMGYNRWGQCGQGSQNVFTIFEPLRVGGQELDNERVTSVAVGFQQVLVLCESGRVYGWGKSLRGQLGIGADMVELP 768
+VY+ GEG+LG LG G +A +E A +SAGW H V + G+ V+GR + +R NIQR P++++ N +R LL VA+P G +A + CSAALT+VL + GR++ G N +GQCG + V EP+RV LD + V VA G+Q L + SG V+ WGK RGQLG G+ V+ P
Sbjct: 28 RVYSYGEGYLGALGTGAYAGVAQPTALEEPAALGATQLSAGWAHGGFVSSAGDTFVFGRALSFRDVIRSTNIQRVAPWLLAWTNEFTRRRGVDTLLPARVALPEGE-------------------------------RARKLVCSAALTLVLAESGRLFAFGANTFGQCGNDREGVSEP-EPVRVA---LDGDDVVDVAAGYQHALAVTRSGAVFAWGKGERGQLGFGSANVKAP 227
BLAST of mRNA_H-elongata_contig153266.3515.1 vs. uniprot
Match: A0A7S3XQZ6_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XQZ6_HETAK) HSP 1 Score: 103 bits (257), Expect = 2.250e-23 Identity = 65/169 (38.46%), Postives = 85/169 (50.30%), Query Frame = 1
Query: 82 TCGEGFLGCLGHGDFAPREYAL-PVEALAHKD-VRCISAGWTHSAAVCADGELLVWGRPFDMKQPLRIWNIQRFLPFVVSVINSVASKRELLSRPVAMPIGSPQHQPITSLSPTAGGKGPTPSAACDVPSPPVKAVSVACSAALTVVLGDDGRVYCMGYNRWGQCGQGS 582
+ GEGFLGCLG G+F + + PV L + V I++GW HSAAV G +WGRPFD K LR+ N+ + + N+ +S E+L P M + P + +AV VACSA LT V+ DGRV C G NRWGQCG G+
Sbjct: 39 SAGEGFLGCLGTGNFEDQLISFQPVVGLPKDEKVIAIASGWAHSAAVTQAGACYIWGRPFDFKNVLRLNNMHTASRALAQLANAFSSPEEVLLAPRVMAL-PPXXXXXXXXXXXXXXEA-------------TRAVGVACSAGLTAVVTSDGRVLCFGQNRWGQCGTGA 193
BLAST of mRNA_H-elongata_contig153266.3515.1 vs. uniprot
Match: A0A482S5U3_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482S5U3_9ARCH) HSP 1 Score: 103 bits (257), Expect = 3.770e-23 Identity = 82/225 (36.44%), Postives = 107/225 (47.56%), Query Frame = 1
Query: 73 QVYTCGEGFLGCLGHGDFAPREYAL-PVEALAH-KDVRCISAGWTHSAAVCADGELLVWGRPFDMKQPLRIWNIQRFLPFVVSVINSVASKRELLSRPVAMPIGSPQHQPITSLSPTAGGKGPTPSAACDVPSPPVKAVSVACSAALTVVLGDDGRVYCMGYNRWGQCGQGSQNVFTIFEPLRVGGQELDNERVTSVAVGFQQVLVLCESGRVYGWGKSLRGQLG 741
+VY G G G LG GD E P+ L + +V+ +SAGW HSAAV GE+ VWG+ FD LR+ I ++ NS A R + +M G +H G P P+ +P V+ V CSA LTV+L G VY MG N+W QCG+ ++EP V G L + V G Q V+ L G Y WGKS +GQLG
Sbjct: 24 KVYVRGSGLYGALGLGDALTDETIFTPLGFLNNINNVKHVSAGWGHSAAVTTQGEVYVWGKCFDFSSLLRLNRIS-------AMSNSFA--RIVARSSNSMLFGGGEH-----------GYFPVPTR---LPLDDVQTVQ--CSAGLTVMLTKQGEVYVMGSNQWNQCGKPIDKQIHVYEPSLVPGIPLCKK----VEAGLQHVVALGRDGSCYAWGKSNKGQLG 219
BLAST of mRNA_H-elongata_contig153266.3515.1 vs. uniprot
Match: A0A484E934_BRELC (Uncharacterized protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484E934_BRELC) HSP 1 Score: 106 bits (264), Expect = 7.820e-23 Identity = 68/227 (29.96%), Postives = 107/227 (47.14%), Query Frame = 1
Query: 88 GEGFLGCLGHGDFAPREYALPVEALAHKDVRCISAGWTHSAAVCADGELLVWGRPFDMKQPLRIWNIQRFLPFVVSVINSVASKRELLSRPVAMPIGSPQHQPITSLSPTAGGKGPTPSAACDVPSPPVKAVSVACSAALTVVLGDDGRVYCMGYNRWGQCGQGSQNVFTIFEPLRVGGQELDNERVTSVAVGFQQVLVLCESGRVYGWGKSLRGQLGIGADMVELP 768
G+GFLG LG G + P+ V+ IS GW H+ V G+ ++GR + +R N+QR LP +V +NS R + + A+ + P + + + CSAALT +L + G+++ +G N +GQCG G + V ++ P V D ++V +A G+Q L + E+G V+ WGK RGQLG G+ + P
Sbjct: 38 GDGFLGALGTGGYDDVVAPTPLATTTALSVKEISVGWAHAGFVTDQGDAYIYGRTHSFRDVIRSTNMQRVLPKLVWWMNSFTRSRGVDTLEPAL-LEMPDRERVKKI---------------------------VCSAALTFILTECGKLFTLGANGYGQCGIGEEGV-SVQLPTHV---RFDGDKVVDIASGYQHGLAVTENGTVFCWGKGERGQLGFGSGNTDAP 232
BLAST of mRNA_H-elongata_contig153266.3515.1 vs. uniprot
Match: B7G4H9_PHATC (Predicted protein n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B7G4H9_PHATC) HSP 1 Score: 92.8 bits (229), Expect = 8.100e-18 Identity = 91/272 (33.46%), Postives = 124/272 (45.59%), Query Frame = 1
Query: 55 VHKRSLQVYTCGEGFLGCLGHGDFAPR--------EYALPVEALAHKDVRCISAGWTHSAAVCADGELLVWGRPFDMKQPLRIWNIQRFLPFVV---SVINSVASKRELLSR---PVAMPIGS-------PQHQPITSLSPTAGGKGPTPSAACDVPSPPVKAVSVACSAALTVVLGDDGRVYCMGYNRWGQCGQG--SQNVFTIFEPLRVGGQELDNER---------VTSVAVGFQQVLVLCESGRVYGWGKSLRGQLGIGADMVELPVA 774
+ +R+ VY G G+ G G+G F E P++ + V+ IS GW H+A + D LL+ GRP D LR+ R LP V ++ +S+ R L SR P+A+ IG P T L A +P V + SV+CSAALT ++ + G+VY G N +GQCG G S +V+ PLR E N+ V VA+G Q + L E G V+ WGK RGQLG G E A
Sbjct: 26 IARRTFAVYAVGSGWTGAFGNGRFDQEISGHNDEEEAGSPLK-IYDGSVKDISLGWGHTAILTEDRRLLLAGRPHDFSVLLRL----RRLPLWVRNYAINSSINEFRGLDSRSVHPIAL-IGRLITWLAIRFKYPTTELEAARRHSIFPELAEIALPDSEVPS-SVSCSAALTAIVTESGKVYAFGLNGFGQCGIGMTSNHVWNPSSPLRGLTSEFANQPRGEMEQSYPVVDVALGLQHGICLNEVGEVFCWGKGERGQLGQGLITTEAHTA 290
BLAST of mRNA_H-elongata_contig153266.3515.1 vs. uniprot
Match: UPI00158C8EE1 (X-linked retinitis pigmentosa GTPase regulator n=1 Tax=Chelonus insularis TaxID=460826 RepID=UPI00158C8EE1) HSP 1 Score: 77.4 bits (189), Expect = 1.920e-12 Identity = 71/250 (28.40%), Postives = 112/250 (44.80%), Query Frame = 1
Query: 46 HLLVHKRSLQVYTCGEGFLGCLGHGDFAPREYA---LPVE--ALAHKDVRCISAGWTHSAAVCADGELLVWGRPFDMKQPLRIWNIQRFLPFVVSVINSVASKRELLSRPVAMPIGSPQHQPITSLSPT--------AGGKGPTPSAACDVPSPPVK----AVSVACSAALTVVLGDDGRVYCMGYNRWGQCGQGSQNVFTIFEPLRVGGQELDNERVTSVAVGFQQVLVLCESGRVYGWGKSLRGQLGI 744
H L+ +++ CG LG G + E + +P+ +A + ++AG HS A+ +DGE+L WG + Q LP ++N + +K +L PV H + S +G G T V P++ AV VAC T++LGDDG +YC G N GQ G G+ NV I P ++ L+NE + + G + V+ ESG+++ G G+LG+
Sbjct: 99 HTLICTGEQKIFACGSDQESQLGRGQMSLGECSSSPVPIYDCGIAGPKILQVAAGSHHSLALTSDGEVLAWGSNLEG---------QLGLPGTSGLVN-IPTKVQL-PEPVKQISAGYYHSAFLTESGAVYVCGEAESGKLGITLDFRTQVAPKPMQLSTTAVFVACGGHHTLILGDDGNLYCTGSNASGQLGMGT-NVTEIQTPKQLSRGVLENEVIAKIECGESHIAVVTESGKLFTCGDGRHGKLGL 336
BLAST of mRNA_H-elongata_contig153266.3515.1 vs. uniprot
Match: UPI001C9B10D5 (X-linked retinitis pigmentosa GTPase regulator-like n=1 Tax=Colletes gigas TaxID=935657 RepID=UPI001C9B10D5) HSP 1 Score: 77.0 bits (188), Expect = 2.600e-12 Identity = 69/250 (27.60%), Postives = 107/250 (42.80%), Query Frame = 1
Query: 46 HLLVHKRSLQVYTCGEGFLGCLGHGDFAPREYAL-PV----EALAHKDVRCISAGWTHSAAVCADGELLVWGRPFDMKQPLRIWNIQRFLPFVVSVINSVASKRELLSRPVAMPIGSPQHQPITSLSPTAGGKGPTPSAACDVPSP------------PVKAVSVACSAALTVVLGDDGRVYCMGYNRWGQCGQGSQNVFTIFEPLRVGGQELDNERVTSVAVGFQQVLVLCESGRVYGWGKSLRGQLGI 744
H L+ + +++TCG G LG G A +YA PV LA + ++AG HS A+ DG +L WG + Q LP + ++N ++ PV H + S G + S + + P A+ VAC T++L ++G +YC G N GQ G G NV +F P + L NE +T +A G ++ ESG+++ G G+LG+
Sbjct: 99 HTLICTGAQKLFTCGSDQEGQLGRGTSAIGDYASSPVLVYDSGLAGAKIVQVAAGSYHSLALTDDGVVLAWGSNLEG---------QLGLPDISGLVNKPTKVH--ITEPVKQISAGYYHSAFLTESGLVYVCGESESGKLGIDAKFSSQAAPKQMQLPCPAMHVACGGHHTLILAENGNLYCTGNNSSGQLGLGI-NVTELFTPKLLPRGALQNETITRIACGESHTAIVTESGKLFTCGDGRHGKLGL 336 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig153266.3515.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig153266.3515.1 >prot_H-elongata_contig153266.3515.1 ID=prot_H-elongata_contig153266.3515.1|Name=mRNA_H-elongata_contig153266.3515.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=263bp MWRALTITRPTIIVRHLLVHKRSLQVYTCGEGFLGCLGHGDFAPREYALPback to top mRNA from alignment at H-elongata_contig153266:317..1225+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig153266.3515.1 ID=mRNA_H-elongata_contig153266.3515.1|Name=mRNA_H-elongata_contig153266.3515.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=909bp|location=Sequence derived from alignment at H-elongata_contig153266:317..1225+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig153266:317..1225+ >mRNA_H-elongata_contig153266.3515.1 ID=mRNA_H-elongata_contig153266.3515.1|Name=mRNA_H-elongata_contig153266.3515.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1578bp|location=Sequence derived from alignment at H-elongata_contig153266:317..1225+ (Himanthalia elongata Himel1 dioecious)back to top |