mRNA_H-elongata_contig15319.3511.1 (mRNA) Himanthalia elongata Himel1 dioecious
|
Overview
Homology
BLAST of mRNA_H-elongata_contig15319.3511.1 vs. uniprot
Match: A0A6H5JRC2_9PHAE (Xanthine dehydrogenase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRC2_9PHAE) HSP 1 Score: 426 bits (1095), Expect = 2.680e-140 Identity = 230/311 (73.95%), Postives = 252/311 (81.03%), Query Frame = 1
Query: 1 VGIEVKFKGMHYPVLISPARVPELNAIVE--NPDGSVFIGGAASLSSVERALAAIERTEEGVGRGVQGAVRACIDMLRWFASTQIRNVACLAGNLATASPISDMNPLLAACGADVLLQSARGGERRVKVRDFFLGYRKVAMELDEVIVGVSLPNACSGK---SDGDIAVSLKFVRPFKQARRREDDISIVASGMRVRLEPREGKWVVVEAGLCLGGMAPTTVAAPRTEAFLVGKEWSAGVMVGAYEKLAEDLPLPPNVPGGQCEYRRALPPSFLFKFFVEVSLRMEALLQGRDGEEELPSPPEIAEADRCA 918
VGIEVKFKGMHYPVLISPARVPEL+AI + DG V IGGAASLSSVE ALA I+ ++G G G GA AC+DMLRWFASTQIRNVACLAGNLATASPISDMNPLLAACGADV+L S RGGERR+KVRDFFLGYRKVAME DEVIV V LPNA S K S + +F+RPFKQARRREDDISIV G+R+ LE R GKWVV EA +C GGMAPTTVAAP TEA+LVGKEWSA M GAYE LA+D+PL +VPGGQCEYRRALPPSFLFKFF+EVSLR+EAL DG+ LP PP I +ADR A
Sbjct: 360 VGIEVKFKGMHYPVLISPARVPELHAITRGSSDDGGVSIGGAASLSSVEHALAEIDG-KKGAGGGNGGAAGACVDMLRWFASTQIRNVACLAGNLATASPISDMNPLLAACGADVVLNSIRGGERRIKVRDFFLGYRKVAMEEDEVIVAVFLPNAVSEKGNDSQSSPPSTFEFIRPFKQARRREDDISIVTGGIRLVLETRGGKWVVKEASMCFGGMAPTTVAAPLTEAYLVGKEWSAETMGGAYELLAKDMPLSSSVPGGQCEYRRALPPSFLFKFFIEVSLRLEALSLESDGQ--LPPPPVIGDADRSA 667
BLAST of mRNA_H-elongata_contig15319.3511.1 vs. uniprot
Match: D7G4V3_ECTSI (Xanthine dehydrogenase n=3 Tax=Ectocarpus TaxID=2879 RepID=D7G4V3_ECTSI) HSP 1 Score: 419 bits (1076), Expect = 3.020e-132 Identity = 222/311 (71.38%), Postives = 247/311 (79.42%), Query Frame = 1
Query: 1 VGIEVKFKGMHYPVLISPARVPELNAIVE--NPDGSVFIGGAASLSSVERALAAIERTEEGVGRGVQGAVRACIDMLRWFASTQIRNVACLAGNLATASPISDMNPLLAACGADVLLQSARGGERRVKVRDFFLGYRKVAMELDEVIVGVSLPNACSGKSDGDIAV---SLKFVRPFKQARRREDDISIVASGMRVRLEPREGKWVVVEAGLCLGGMAPTTVAAPRTEAFLVGKEWSAGVMVGAYEKLAEDLPLPPNVPGGQCEYRRALPPSFLFKFFVEVSLRMEALLQGRDGEEELPSPPEIAEADRCA 918
VGIEVKFKGMHYPVLISPARVPEL+AI + + DG V IGGAASLSSVE ALA I+ + G G G GA AC+DMLRWFASTQIRNVACLAGNLATASP SDMNPLLAACGADV+LQS RGGERRVKVRDFF GYRKVAME DEVIV V LPNA S + + +F+RPFKQARRREDDISIV G+R+ LEPR GKW+V++ +C GGMAPTTVAAP TE +LVG EWSA M AYE LA+D+PL + PGGQCEYRRALPPSFLFKFF+EVSLR+EAL DG+ LP PP I +ADR A
Sbjct: 358 VGIEVKFKGMHYPVLISPARVPELHAITQGSSDDGGVSIGGAASLSSVEHALAEIDGRKRGAGGGNGGAAGACVDMLRWFASTQIRNVACLAGNLATASPTSDMNPLLAACGADVVLQSIRGGERRVKVRDFFGGYRKVAMEEDEVIVAVFLPNAASKXXXXXXSPPPSTFEFIRPFKQARRREDDISIVTGGIRLMLEPRGGKWIVMDTSMCFGGMAPTTVAAPLTEVYLVGNEWSAETMGEAYELLAQDMPLSSSAPGGQCEYRRALPPSFLFKFFIEVSLRLEALSVESDGQ--LPPPPVIGDADRSA 666
BLAST of mRNA_H-elongata_contig15319.3511.1 vs. uniprot
Match: A0A836C8N1_9STRA (Xanthine dehydrogenase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C8N1_9STRA) HSP 1 Score: 281 bits (719), Expect = 1.390e-82 Identity = 161/309 (52.10%), Postives = 202/309 (65.37%), Query Frame = 1
Query: 1 VGIEVKFKGMHYPVLISPARVPELNAIVENPDGS-VFIGGAASLSSVERAL-AAIERTEEGVGRGVQGAVRACIDMLRWFASTQIRNVACLAGNLATASPISDMNPLLAACGADVLLQSARGGERRVKVRDFFLGYRKVAMELDEVIVGVSLPNACSGKSDGDIAVSLKFVRPFKQARRREDDISIVASGMRVRLEPREGKWVVVEAGLCLGGMAPTTVAAPRTEAFLVGKEWSAGVMVGAYEKLAEDLPLPPNVPGGQCEYRRALPPSFLFKFFVEVSLRMEALL-QGRDGEEELPSPPEIAEADRCA 918
VGIE KFK + YPV+I+P RVPE+ +VE DGS + IGGAA+L+++E I+ RG+ AC MLRWFAS QIRNVA LAGNLATASPISDMNP+L++ GA + L S G R VKV DFFLGYRKV M +E+I + +P +FV +KQARRREDDISIV GMR+ L+P W+V A L GGMAPTTV A +T A+L GK W + GA+ LAED+PLP VPGGQ E+R+ALPPSFLFKFFV+ S+ +++L+ Q + LP+ P + A R A
Sbjct: 272 VGIETKFKNLLYPVIIAPTRVPEMVQVVEAGDGSGIVIGGAATLATMEHFFNTQIQSKPAHTTRGLM----ACTQMLRWFASNQIRNVAALAGNLATASPISDMNPMLSSLGATLTLAS-ESGRREVKVADFFLGYRKVDMRPEEIIASIHVP----------YTKEFEFVGAYKQARRREDDISIVTCGMRLNLQPSADGWLVAGADLVFGGMAPTTVTAKKTNAYLQGKLWCEETLDGAFTTLAEDMPLPKEVPGGQSEFRQALPPSFLFKFFVQTSIDLDSLVAQEENAGRGLPAAPVVDAATRSA 565
BLAST of mRNA_H-elongata_contig15319.3511.1 vs. uniprot
Match: W7TFQ7_9STRA (Xanthine dehydrogenase n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TFQ7_9STRA) HSP 1 Score: 277 bits (708), Expect = 5.320e-81 Identity = 169/317 (53.31%), Postives = 205/317 (64.67%), Query Frame = 1
Query: 1 VGIEVKFKGMHYPVLISPARVPELNAIVENPDGSVFIGGAASLSSVERAL----AAIERTEEGV--GRGVQGAVRACIDMLRWFASTQIRNVACLAGNLATASPISDMNPLLAACGADVLLQSARGGERRVKVRDFFLGYRKVAMELDEVIVGVSLPNACSGKSDGDIAVSLKFVRPFKQARRREDDISIVASGMRVRLEP-----REGKWVVVEAGLCLGGMAPTTVAAPRTEAFLVGKEWSAGVMVGAYEKLAEDLPLPPNVPGGQCEYRRALPPSFLFKFFVEVSLRMEALLQGRDGEEELPSPPEIAEADRCA 918
VGIE KFK + PV+++P VPELN ++ + V IGGA SL+ +E A +++ E+ RG++ AV A LRWFAS QIRNVA LAGNLATASPISDMNP+L + GA V L S GER V VR FF GYRKV M DEVI ++LP S +FV P+KQARRREDDISIV + +RVRL P EG+WV+ EAG GGMAPTTVAA +TEAFL GK+W+ + A + L EDLPLP VPGGQ EYRR LPPSFLFKFFV+ +L +E+L+ LP P I A+R A
Sbjct: 329 VGIETKFKQVPVPVVLAPVAVPELN-VLRVTEAGVDIGGAVSLARLEHFAGQDHAGLKQREKEAFKARGLE-AVHA---QLRWFASNQIRNVASLAGNLATASPISDMNPVLVSLGATVTLASQARGERVVPVRSFFRGYRKVDMLEDEVIKTITLPFPAS---------RFEFVGPYKQARRREDDISIVTACLRVRLVPVASRSAEGRWVIEEAGFGFGGMAPTTVAAQKTEAFLRGKDWAVSTIRAASQVLREDLPLPATVPGGQAEYRRTLPPSFLFKFFVKTTLELESLVAAAPPSSPLPPVPVIPAAERSA 631
BLAST of mRNA_H-elongata_contig15319.3511.1 vs. uniprot
Match: A0A7S0IPX0_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Calcidiscus leptoporus TaxID=127549 RepID=A0A7S0IPX0_9EUKA) HSP 1 Score: 239 bits (610), Expect = 1.840e-68 Identity = 145/289 (50.17%), Postives = 175/289 (60.55%), Query Frame = 1
Query: 1 VGIEVKFKGMHYPVLISPARVPELNAIVENPDGSVFIGGAASLSSVERALAAIERTE-EGVGRGVQGAVRACIDMLRWFASTQIRNVACLAGNLATASPISDMNPLLAACGADVLLQSARGGERRVKVRDFFLGYRKVAMELDEVIVGVSLPNACSGKSDGDIAVSLKFVRPFKQARRREDDISIVASGMRVRLEPREGKWVVVEAGLCLGGMAPTTVAAPRTEAFLVGKEWSAGVMVGAYEKLAEDLPLPPNVPGGQCEYRRALPPSFLFKFFVEVSLRMEALLQGRD 864
VGIE +FKG+ VL+ PA +PEL + + +F G A LS V A E EG + A+R DMLRWFASTQIRNVACL GNLATASPISDMNPLL A GA + + SA GERR V+DFF GYR+V + DE+IV + +P I +FV P KQARRREDDISIV +G+RVRL+ + WVV EA GGMAPTTV A +T L G W A L ++L +P PGGQ EYR AL SFLFK +V VSL++ L R+
Sbjct: 231 VGIESRFKGVCTEVLLCPAAIPELLSCEATAEEYIF-GACAPLSEVSAFCEAAGGAEAEGGASTIAVAIR---DMLRWFASTQIRNVACLGGNLATASPISDMNPLLMAAGASLCICSAAHGERRASVKDFFKGYRRVDLADDEIIVRIHVP----------ITRPHEFVMPLKQARRREDDISIVTAGLRVRLQLVDEGWVVEEASFAYGGMAPTTVLAKKTARALAGHAWGDAAFKVACAALEDELRVPAGAPGGQSEYRTALSVSFLFKLYVSVSLKLGLSLSPRE 505
BLAST of mRNA_H-elongata_contig15319.3511.1 vs. uniprot
Match: A0A7R9U4K0_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U4K0_9STRA) HSP 1 Score: 240 bits (612), Expect = 3.640e-68 Identity = 140/274 (51.09%), Postives = 170/274 (62.04%), Query Frame = 1
Query: 1 VGIEVKFKGMHYPVLISPARVPELNAIVENPDGSVFIGGAASLSSVERALAAIERTEEGVGRGVQGAVRACIDMLRWFASTQIRNVACLAGNLATASPISDMNPLLAACGADVLLQSARGGERRVKVRDFFLGYRKVAMELDEVIVGVSLPNACSGKSDGDIAVSLKFVRPFKQARRREDDISIVASGMRVRLEPREGKWVVVEAGLCLGGMAPTTVAAPRTEAFLVGKEWSAGVMVGAYEKLAEDLPLPPNVPGGQCEYRRALPPSFLFKFFV 822
VG+++KFKG V I VPEL+ + D + +GG ASL VE AA G+ A A MLRWFAS QIRNVA LAGNLATASPISDMNP+L A A ++L S G R + VR+FF+ YRK A+ DEVIV + +P ++ + PFKQARRREDDISIV G+R+ P EG+W V A LC GGMA T AA +TE FLVGK WS ++ A + L E+L LP +VPGGQ EYR ALPPSFLFK F+
Sbjct: 145 VGVDLKFKGRRPGVYIHVGDVPELSELGACED-HLTVGGCASLRDVEHFFAAYAED----GKDSSKAAHAMQQMLRWFASNQIRNVASLAGNLATASPISDMNPMLMAADATLVLHSLSSGVRELPVREFFMSYRKTALRPDEVIVHIRVP----------LSERYEIFMPFKQARRREDDISIVTGGIRICYAPEEGEWKVTRARLCFGGMAAVTKAAIKTEDFLVGKTWSPELVREATQVLTEELRLPDSVPGGQAEYRVALPPSFLFKLFL 403
BLAST of mRNA_H-elongata_contig15319.3511.1 vs. uniprot
Match: A0A2K8DNX2_PROMN (Xanthine dehydrogenase (Fragment) n=1 Tax=Prorocentrum minimum TaxID=39449 RepID=A0A2K8DNX2_PROMN) HSP 1 Score: 237 bits (604), Expect = 5.280e-67 Identity = 145/303 (47.85%), Postives = 175/303 (57.76%), Query Frame = 1
Query: 1 VGIEVKFKGMHYPVLISPARVPELNAIVENPDGSVFIGGAASLSSVERALAAIERTEEGVGRGVQGAVRACIDMLRWFASTQIRNVACLAGNLATASPISDMNPLLAACGADVLLQSARGGERRVKVRDFFLGYRKVAMELDEVIVGVSLPNACSGKSDGDIAVSLKFVRPFKQARRREDDISIVASGMRVRLEPREGKWVVVEAGLCLGGMAPTTVAAPRTEAFLVGKEWSAGVMVGAYEKLAEDLPLPPNVPGGQCEYRRALPPSFLFKFFVEVSLRMEALLQGRDGEEELPSPPEIAEAD 909
+GIE KFK + YPV IS A V EL+ + + +G++ IGGA +LSSVE IE + ++A +DMLRWFAS QIRNVA LAGNLATASPISDMNP+L A GA V + R V VR+FF YR V M EVI V +P +F R FKQARRR+DDISIV + +RV L P EG W + GGMAPTT A RTE LVG W + A LAEDLPLP VPGG YR+ L SFL KF++ VS + A + G + LP PP + D
Sbjct: 337 IGIETKFKKLEYPVQISTAAVRELHELCFDAEGALVIGGAVTLSSVEHF---IEDALKDRPLAAFSWLKAMLDMLRWFASGQIRNVAALAGNLATASPISDMNPVLMALGATVTVAGCGCPPREVLVREFFKRYRTVDMSPSEVICRVRVPPPTG---------EFEFARSFKQARRRDDDISIVNACIRVELSPGEGGWTIRSVDTGFGGMAPTTKRARRTEEALVGAAWGEAAIERACAALAEDLPLPEGVPGGMAAYRQTLAASFLKKFYLGVSQELAARVAGAEPARALPRPPPVQAED 627
BLAST of mRNA_H-elongata_contig15319.3511.1 vs. uniprot
Match: A0A443NBY7_9MAGN (Xanthine dehydrogenase 1 isoform X1 n=1 Tax=Cinnamomum micranthum f. kanehirae TaxID=337451 RepID=A0A443NBY7_9MAGN) HSP 1 Score: 234 bits (598), Expect = 3.090e-66 Identity = 131/283 (46.29%), Postives = 176/283 (62.19%), Query Frame = 1
Query: 1 VGIEVKFKGMHYPVLISPARVPELNAIVENPDGSVFIGGAASLSSVERAL--AAIERTEEGVGRGVQGAVRACIDMLRWFASTQIRNVACLAGNLATASPISDMNPLLAACGADVLLQSARGGERRVKVRDFFLGYRKVAMELDEVIVGVSLPNACSGKSDGDIAVSLKFVRPFKQARRREDDISIVASGMRVRLEPREGKWVVVEAGLCLGGMAPTTVAAPRTEAFLVGKEWSAGVMVGAYEKLAEDLPLPPNVPGGQCEYRRALPPSFLFKFFVEVSLRME 843
VGIE KFK + Y V IS VPELNA+ DG + IG A L+ +++ L A ER + +A I+ L+WFA TQI+NVA + GN+ TASPISD+NPL A GA + + R + +DFF+GYRKV M E+++ + LP +FV+ FKQA RR+DDI+IV +GMRV LE REGKW V +A + GG+AP +++A +TE FL GK W ++ GA +KL+ED+ LP NVPGG E+RR+L SF FKFF+ V+ ME
Sbjct: 193 VGIETKFKNVQYQVQISVTHVPELNALSVRDDG-LEIGAAVRLTELQKVLRKAVAERDAHETS-----SCKAFIEQLKWFAGTQIKNVASVGGNICTASPISDLNPLWMAAGAKFRIIDCKENVRTTQAKDFFVGYRKVDMRPGEILLSIFLP----------WTRPFEFVKEFKQAHRRDDDIAIVNAGMRVFLEEREGKWAVSDASVVYGGVAPVSLSASKTECFLAGKSWDTELLQGALDKLSEDISLPENVPGGMAEFRRSLTLSFFFKFFLWVAQHME 459
BLAST of mRNA_H-elongata_contig15319.3511.1 vs. uniprot
Match: A0A7S3BIJ7_9VIRI (Hypothetical protein n=2 Tax=Prasinoderma singulare TaxID=676789 RepID=A0A7S3BIJ7_9VIRI) HSP 1 Score: 233 bits (594), Expect = 1.170e-65 Identity = 137/287 (47.74%), Postives = 179/287 (62.37%), Query Frame = 1
Query: 1 VGIEVKFKGMHYPVLISPARVPELNAIVENPDGSVFIGGAASLSSVERALAAIERTEEGVGRGVQGAVRACI-DMLRWFASTQIRNVACLAGNLATASPISDMNPLLAACGADVLLQSARGG---ERRVKVRDFFLGYRKVAMELDEVIVGVSLPNACSGKSDGDIAVSLKFVRPFKQARRREDDISIVASGMRVRLEPREG-KWVVVEAGLCLGGMAPTTVAAPRTEAFLVGKEWSAGVMVGAYEKLAEDLPLPPNVPGGQCEYRRALPPSFLFKFFVEVSLRMEA 846
VG+E +FKG+ PVLI+P VPEL A+ E PDG + +GGA +L+ +E E R + A A + L+WFA QIRNVA +AGN+ TASPISD+NP+L ACGA + L +GG R V DFFLGYRK AM EV++ V+LP A G + G +L V FKQ+ RREDDI+IV +G+RV LEP G +VV EAG+ +GG+AP T+ + EA LVG+ W + A + ED+ LP NVPGG EYR AL + LFKFF + +L + A
Sbjct: 404 VGVEARFKGVEDPVLIAPTHVPELTALKETPDG-LRVGGAVTLTDLEARC-----HEVAADRPMACAAAAAVASQLQWFAGAQIRNVATVAGNVCTASPISDLNPILVACGATMTLAREKGGGVATREVAAADFFLGYRKTAMAEGEVLLAVTLPRA-KGVAPG----ALDIVHDFKQSHRREDDIAIVTAGVRVLLEPEAGGSYVVREAGVGMGGVAPRTIRCQQVEAALVGQTWGRKALDAALRAVREDVTLPENVPGGMPEYRMALSSAVLFKFFAKATLALPA 679
BLAST of mRNA_H-elongata_contig15319.3511.1 vs. uniprot
Match: A0A6G0PMM4_9STRA (Xanthine dehydrogenase n=4 Tax=Phytophthora TaxID=4783 RepID=A0A6G0PMM4_9STRA) HSP 1 Score: 229 bits (583), Expect = 3.450e-64 Identity = 146/307 (47.56%), Postives = 181/307 (58.96%), Query Frame = 1
Query: 1 VGIEVKFKGMHYPVLISPARVPELNAIVE---------------NPDGSVFIGGAASLSSVERALAAIERTEEGVGRGVQGAVRACIDMLRWFASTQIRNVACLAGNLATASPISDMNPLLAACGADVLLQSARGGERRVKVRDFFLGYRKVAMELDEVIVGVSLPNACSGKSDGDIAVSLKFVRPFKQARRREDDISIVASGMRVRLE-PRE-GKWVVVEAGLCLGGMAPTTVAAPRTEAFLVGKEWSAGVMVGAYEKL-AEDLPLPPNVPGGQCEYRRALPPSFLFKFFVEVSLRMEALLQGRDG 867
+GIE KFKG Y L++ +RVPEL A + P V G A +L+ V+ L+ I +T A A + ML+WFAST IRNVAC+AGNL TASPISDMNPLLAA A + LQS RG R V+VRDFFL YRKV ME DEVI GV +P +++ PFKQARRREDDISIV +G+RV LE RE G W +++A GGMAP T A TE FL+GK + A + A + L + D LP VPGG +YR +L SFL+KFF+ S R++ LQ G
Sbjct: 308 MGIETKFKGFKYAHLVNVSRVPELVATKDVTPDDPINQTVFAGAEPFEGVKFGAAVTLTDVKLQLSEIVKTLPSYQTR---AFEAIVQMLKWFASTHIRNVACIAGNLVTASPISDMNPLLAAMNAYIELQSTRGA-RYVRVRDFFLSYRKVGMEQDEVITGVYVP----------YTKKWEYMLPFKQARRREDDISIVTAGIRVELECSRETGAWTILDASAVYGGMAPVTKPASETEHFLIGKVFDAAMFDEACDVLHSSDFKLPDGVPGGMAKYRESLCSSFLYKFFIASSERLQLDLQANIG 600 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig15319.3511.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig15319.3511.1 >prot_H-elongata_contig15319.3511.1 ID=prot_H-elongata_contig15319.3511.1|Name=mRNA_H-elongata_contig15319.3511.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=297bp MHYPVLISPARVPELNAIVENPDGSVFIGGAASLSSVERALAAIERTEEGback to top mRNA from alignment at H-elongata_contig15319:347..4954- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig15319.3511.1 ID=mRNA_H-elongata_contig15319.3511.1|Name=mRNA_H-elongata_contig15319.3511.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=4608bp|location=Sequence derived from alignment at H-elongata_contig15319:347..4954- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig15319:347..4954- >mRNA_H-elongata_contig15319.3511.1 ID=mRNA_H-elongata_contig15319.3511.1|Name=mRNA_H-elongata_contig15319.3511.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1782bp|location=Sequence derived from alignment at H-elongata_contig15319:347..4954- (Himanthalia elongata Himel1 dioecious)back to top |