mRNA_H-elongata_contig153118.3508.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig153118.3508.1
Unique NamemRNA_H-elongata_contig153118.3508.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig153118.3508.1 vs. uniprot
Match: D7FTR2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTR2_ECTSI)

HSP 1 Score: 60.1 bits (144), Expect = 1.000e-9
Identity = 26/37 (70.27%), Postives = 31/37 (83.78%), Query Frame = 1
Query:    1 MILGIKEIDHDLIYMLNDDVATPTALVGKKMVPILEL 111
            M+ G+K I HDL Y+ NDD+ TPTA+VGKKMVPILEL
Sbjct:   34 MVFGLKGITHDLAYLSNDDIETPTAMVGKKMVPILEL 70          
BLAST of mRNA_H-elongata_contig153118.3508.1 vs. uniprot
Match: A0A6H5J619_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J619_9PHAE)

HSP 1 Score: 60.1 bits (144), Expect = 1.480e-9
Identity = 26/37 (70.27%), Postives = 31/37 (83.78%), Query Frame = 1
Query:    1 MILGIKEIDHDLIYMLNDDVATPTALVGKKMVPILEL 111
            M+ G+K I HDL Y+ NDD+ TPTA+VGKKMVPILEL
Sbjct:  105 MVFGLKGITHDLAYLSNDDIETPTAMVGKKMVPILEL 141          
BLAST of mRNA_H-elongata_contig153118.3508.1 vs. uniprot
Match: A0A5J4YKV5_PORPP (Glutaredoxin 2 n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4YKV5_PORPP)

HSP 1 Score: 59.3 bits (142), Expect = 2.000e-9
Identity = 25/35 (71.43%), Postives = 32/35 (91.43%), Query Frame = 1
Query:    7 LGIKEIDHDLIYMLNDDVATPTALVGKKMVPILEL 111
            LG+K I H+L+++ NDDVATPTALVGKK+VPILE+
Sbjct:   40 LGLKNIKHELVFLANDDVATPTALVGKKVVPILEI 74          
BLAST of mRNA_H-elongata_contig153118.3508.1 vs. uniprot
Match: A0A0G4EFM6_VITBC (GST N-terminal domain-containing protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4EFM6_VITBC)

HSP 1 Score: 59.7 bits (143), Expect = 2.140e-9
Identity = 25/37 (67.57%), Postives = 30/37 (81.08%), Query Frame = 1
Query:    1 MILGIKEIDHDLIYMLNDDVATPTALVGKKMVPILEL 111
            MI G+K I HDL+YM NDD+ TPT L+GKKM PILE+
Sbjct:  124 MIFGLKNIKHDLVYMANDDIETPTHLIGKKMAPILEV 160          
BLAST of mRNA_H-elongata_contig153118.3508.1 vs. uniprot
Match: A0A348XL67_9BACT (Glutaredoxin n=1 Tax=Lentisphaeria bacterium TaxID=2053569 RepID=A0A348XL67_9BACT)

HSP 1 Score: 57.0 bits (136), Expect = 1.340e-8
Identity = 27/37 (72.97%), Postives = 31/37 (83.78%), Query Frame = 1
Query:    1 MILGIKEIDHDLIYMLNDDVATPTALVGKKMVPILEL 111
            M LGIK I  +L+ MLNDDV TPTA++GKKMVPILEL
Sbjct:   39 MPLGIKNIPCELVVMLNDDVETPTAMIGKKMVPILEL 75          
BLAST of mRNA_H-elongata_contig153118.3508.1 vs. uniprot
Match: W7TQ45_9STRA (Glutaredoxin 2 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TQ45_9STRA)

HSP 1 Score: 55.5 bits (132), Expect = 6.090e-8
Identity = 25/37 (67.57%), Postives = 30/37 (81.08%), Query Frame = 1
Query:    1 MILGIKEIDHDLIYMLNDDVATPTALVGKKMVPILEL 111
            +I G+K I H LI++ NDD  TPTALVGKKMVPILE+
Sbjct:   69 IIFGLKRIPHQLIFLDNDDADTPTALVGKKMVPILEM 105          
BLAST of mRNA_H-elongata_contig153118.3508.1 vs. uniprot
Match: A0A813EIR4_POLGL (Hypothetical protein n=3 Tax=Polarella glacialis TaxID=89957 RepID=A0A813EIR4_POLGL)

HSP 1 Score: 54.3 bits (129), Expect = 1.760e-7
Identity = 24/37 (64.86%), Postives = 31/37 (83.78%), Query Frame = 1
Query:    1 MILGIKEIDHDLIYMLNDDVATPTALVGKKMVPILEL 111
            +I G+K I H+L++M NDDV TPTALVGKK+ PIL+L
Sbjct:  102 IIFGMKNIKHNLVWMANDDVDTPTALVGKKISPILQL 138          
BLAST of mRNA_H-elongata_contig153118.3508.1 vs. uniprot
Match: A0A7R9T978_9VIRI (Hypothetical protein n=1 Tax=Prasinoderma coloniale TaxID=156133 RepID=A0A7R9T978_9VIRI)

HSP 1 Score: 53.9 bits (128), Expect = 2.150e-7
Identity = 22/34 (64.71%), Postives = 29/34 (85.29%), Query Frame = 1
Query:    7 LGIKEIDHDLIYMLNDDVATPTALVGKKMVPILE 108
            LG+K I H++++M NDDVATPTAL+GKK+ PI E
Sbjct:   51 LGLKNIKHEVVFMANDDVATPTALLGKKIAPIYE 84          
BLAST of mRNA_H-elongata_contig153118.3508.1 vs. uniprot
Match: A0A7S0M661_9CRYP (Hypothetical protein n=1 Tax=Cryptomonas curvata TaxID=233186 RepID=A0A7S0M661_9CRYP)

HSP 1 Score: 53.1 bits (126), Expect = 4.190e-7
Identity = 21/36 (58.33%), Postives = 30/36 (83.33%), Query Frame = 1
Query:    4 ILGIKEIDHDLIYMLNDDVATPTALVGKKMVPILEL 111
            I+G K I H+++++ NDD+ TPT LVGKK+VPILE+
Sbjct:   58 IMGFKNIKHNVVFLANDDIETPTKLVGKKVVPILEI 93          
BLAST of mRNA_H-elongata_contig153118.3508.1 vs. uniprot
Match: A0A7S3FHQ0_9VIRI (Hypothetical protein n=2 Tax=Prasinoderma singulare TaxID=676789 RepID=A0A7S3FHQ0_9VIRI)

HSP 1 Score: 52.8 bits (125), Expect = 5.740e-7
Identity = 21/34 (61.76%), Postives = 28/34 (82.35%), Query Frame = 1
Query:    7 LGIKEIDHDLIYMLNDDVATPTALVGKKMVPILE 108
            LG+K + H+ ++M NDDVATPTAL+GKK+ PI E
Sbjct:   57 LGLKNVKHEAVFMANDDVATPTALLGKKIAPIYE 90          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig153118.3508.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FTR2_ECTSI1.000e-970.27Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5J619_9PHAE1.480e-970.27Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A5J4YKV5_PORPP2.000e-971.43Glutaredoxin 2 n=1 Tax=Porphyridium purpureum TaxI... [more]
A0A0G4EFM6_VITBC2.140e-967.57GST N-terminal domain-containing protein n=1 Tax=V... [more]
A0A348XL67_9BACT1.340e-872.97Glutaredoxin n=1 Tax=Lentisphaeria bacterium TaxID... [more]
W7TQ45_9STRA6.090e-867.57Glutaredoxin 2 n=2 Tax=Monodopsidaceae TaxID=42507... [more]
A0A813EIR4_POLGL1.760e-764.86Hypothetical protein n=3 Tax=Polarella glacialis T... [more]
A0A7R9T978_9VIRI2.150e-764.71Hypothetical protein n=1 Tax=Prasinoderma colonial... [more]
A0A7S0M661_9CRYP4.190e-758.33Hypothetical protein n=1 Tax=Cryptomonas curvata T... [more]
A0A7S3FHQ0_9VIRI5.740e-761.76Hypothetical protein n=2 Tax=Prasinoderma singular... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig153118contigH-elongata_contig153118:1358..1468 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size111
Cds size111
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929905.2173698-CDS-H-elongata_contig153118:1357..14681622929905.2173698-CDS-H-elongata_contig153118:1357..1468Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig153118 1358..1468 -
1691679202.5711973-CDS-H-elongata_contig153118:1357..14681691679202.5711973-CDS-H-elongata_contig153118:1357..1468Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig153118 1358..1468 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig153118.3508.1prot_H-elongata_contig153118.3508.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig153118 1358..1468 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig153118.3508.1

>prot_H-elongata_contig153118.3508.1 ID=prot_H-elongata_contig153118.3508.1|Name=mRNA_H-elongata_contig153118.3508.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=37bp
MILGIKEIDHDLIYMLNDDVATPTALVGKKMVPILEL
back to top

mRNA from alignment at H-elongata_contig153118:1358..1468-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig153118.3508.1 ID=mRNA_H-elongata_contig153118.3508.1|Name=mRNA_H-elongata_contig153118.3508.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=111bp|location=Sequence derived from alignment at H-elongata_contig153118:1358..1468- (Himanthalia elongata Himel1 dioecious)
ATGATTCTCGGCATTAAAGAAATCGACCACGACCTGATATACATGTTGAA CGACGACGTCGCCACGCCCACCGCGCTGGTTGGCAAGAAGATGGTGCCGA TCCTCGAGCTA
back to top

Coding sequence (CDS) from alignment at H-elongata_contig153118:1358..1468-

>mRNA_H-elongata_contig153118.3508.1 ID=mRNA_H-elongata_contig153118.3508.1|Name=mRNA_H-elongata_contig153118.3508.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=222bp|location=Sequence derived from alignment at H-elongata_contig153118:1358..1468- (Himanthalia elongata Himel1 dioecious)
ATGATTCTCGGCATTAAAGAAATCGACCACGACCTGATATACATGTTGAA
CGACGACGTCGCCACGCCCACCGCGCTGGTTGGCAAGAAGATGGTGCCGA
TCCTCGAGCTAATGATTCTCGGCATTAAAGAAATCGACCACGACCTGATA
TACATGTTGAACGACGACGTCGCCACGCCCACCGCGCTGGTTGGCAAGAA
GATGGTGCCGATCCTCGAGCTA
back to top