mRNA_H-elongata_contig153100.3507.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig153100.3507.1
Unique NamemRNA_H-elongata_contig153100.3507.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig153100.3507.1 vs. uniprot
Match: D7FVE4_ECTSI (DnaJ homolog subfamily C member 16 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVE4_ECTSI)

HSP 1 Score: 81.6 bits (200), Expect = 6.120e-17
Identity = 38/45 (84.44%), Postives = 42/45 (93.33%), Query Frame = 1 
Query:    1 DFSKLRVKQLRELLLAHGETCEGCVEKVDFEKKLREAVLAAHGAR 135
            DFSKLRVKQLRELLLAHG+ C+GCVEK DFE+KLREAV+AAH AR
Sbjct:  443 DFSKLRVKQLRELLLAHGDPCDGCVEKRDFEQKLREAVVAAHRAR 487
[Close]
BLAST of mRNA_H-elongata_contig153100.3507.1 vs. uniprot
Match: A0A7R9U5Q8_9STRA (Hypothetical protein n=2 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U5Q8_9STRA)

HSP 1 Score: 54.3 bits (129), Expect = 2.720e-7
Identity = 22/40 (55.00%), Postives = 32/40 (80.00%), Query Frame = 1 
Query:    1 DFSKLRVKQLRELLLAHGETCEGCVEKVDFEKKLREAVLA 120
            DFSK+++++LRE+L A G  C GC+EK D+ +K+REAV A
Sbjct:  411 DFSKMKLRELREILAALGSECVGCLEKADYVRKVREAVAA 450
[Close]
BLAST of mRNA_H-elongata_contig153100.3507.1 vs. uniprot
Match: A0A485LE76_9STRA (Aste57867_20104 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LE76_9STRA)

HSP 1 Score: 52.0 bits (123), Expect = 7.250e-7
Identity = 22/36 (61.11%), Postives = 29/36 (80.56%), Query Frame = 1 
Query:    1 DFSKLRVKQLRELLLAHGETCEGCVEKVDFEKKLRE 108
            D+SKLRVK+L+++L   G +C GCVEK DF KKL+E
Sbjct:  127 DYSKLRVKELKKILSERGVSCNGCVEKSDFVKKLQE 162
[Close]
BLAST of mRNA_H-elongata_contig153100.3507.1 vs. uniprot
Match: A0A1I8BMN1_MELHA (Mesencephalic astrocyte-derived neurotrophic factor homolog n=1 Tax=Meloidogyne hapla TaxID=6305 RepID=A0A1I8BMN1_MELHA)

HSP 1 Score: 51.6 bits (122), Expect = 1.290e-6
Identity = 22/36 (61.11%), Postives = 29/36 (80.56%), Query Frame = 1 
Query:    1 DFSKLRVKQLRELLLAHGETCEGCVEKVDFEKKLRE 108
            D  K+RV QLRELL   G++C+GCVEKVDF +++RE
Sbjct:  142 DLDKMRVGQLRELLRKLGDSCKGCVEKVDFVQRIRE 177
[Close]
BLAST of mRNA_H-elongata_contig153100.3507.1 vs. uniprot
Match: A0A6V7TKP1_9BILA (Mesencephalic astrocyte-derived neurotrophic factor homolog n=3 Tax=Meloidogyne enterolobii TaxID=390850 RepID=A0A6V7TKP1_9BILA)

HSP 1 Score: 51.6 bits (122), Expect = 1.350e-6
Identity = 22/36 (61.11%), Postives = 29/36 (80.56%), Query Frame = 1 
Query:    1 DFSKLRVKQLRELLLAHGETCEGCVEKVDFEKKLRE 108
            D  K+RV QLRELL   G++C+GCVEKVDF +++RE
Sbjct:  146 DLDKMRVGQLRELLRKLGDSCKGCVEKVDFVQRIRE 181
[Close]
BLAST of mRNA_H-elongata_contig153100.3507.1 vs. uniprot
Match: A0A0A7CP90_9STRA (Secreted protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A0A7CP90_9STRA)

HSP 1 Score: 51.2 bits (121), Expect = 1.390e-6
Identity = 20/36 (55.56%), Postives = 30/36 (83.33%), Query Frame = 1 
Query:    1 DFSKLRVKQLRELLLAHGETCEGCVEKVDFEKKLRE 108
            D+SK+RVK+L+++L   GE+C GCVEK DF K+L++
Sbjct:  125 DYSKMRVKELKKILQERGESCNGCVEKSDFIKRLQD 160
[Close]
BLAST of mRNA_H-elongata_contig153100.3507.1 vs. uniprot
Match: A0A1W0A1F5_9STRA (Uncharacterized protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0A1F5_9STRA)

HSP 1 Score: 50.8 bits (120), Expect = 1.890e-6
Identity = 19/36 (52.78%), Postives = 29/36 (80.56%), Query Frame = 1 
Query:    1 DFSKLRVKQLRELLLAHGETCEGCVEKVDFEKKLRE 108
            D+SK+RVK+L+++L   G TC GC+EK D+ K+L+E
Sbjct:  123 DYSKMRVKELKKILQERGVTCNGCIEKTDYIKRLKE 158
[Close]
BLAST of mRNA_H-elongata_contig153100.3507.1 vs. uniprot
Match: A0A425D6G0_9STRA (ARMET_C domain-containing protein n=5 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A425D6G0_9STRA)

HSP 1 Score: 50.8 bits (120), Expect = 1.970e-6
Identity = 21/36 (58.33%), Postives = 29/36 (80.56%), Query Frame = 1 
Query:    1 DFSKLRVKQLRELLLAHGETCEGCVEKVDFEKKLRE 108
            D+SKLRVK+L+++L   G +C GCVEK DF KKL++
Sbjct:  126 DYSKLRVKELKKILSERGVSCNGCVEKSDFVKKLQD 161
[Close]
BLAST of mRNA_H-elongata_contig153100.3507.1 vs. uniprot
Match: K0TB99_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0TB99_THAOC)

HSP 1 Score: 48.5 bits (114), Expect = 8.720e-6
Identity = 21/36 (58.33%), Postives = 28/36 (77.78%), Query Frame = 1 
Query:    1 DFSKLRVKQLRELLLAHGETCEGCVEKVDFEKKLRE 108
            D SKLRVKQL+ +LL  G  C+GCVEK +F KK+++
Sbjct:   85 DLSKLRVKQLKSILLDRGVECKGCVEKDEFIKKVQD 120
[Close]
BLAST of mRNA_H-elongata_contig153100.3507.1 vs. uniprot
Match: A0A7S3L3W4_9STRA (Hypothetical protein n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3L3W4_9STRA)

HSP 1 Score: 48.1 bits (113), Expect = 2.030e-5
Identity = 21/36 (58.33%), Postives = 27/36 (75.00%), Query Frame = 1 
Query:    1 DFSKLRVKQLRELLLAHGETCEGCVEKVDFEKKLRE 108
            D SKLRVKQL+++L   G  C GCVEK +F KK++E
Sbjct:  121 DLSKLRVKQLKQILSQRGVECTGCVEKDEFVKKVQE 156
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig153100.3507.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 18
Match NameE-valueIdentityDescription
D7FVE4_ECTSI6.120e-1784.44DnaJ homolog subfamily C member 16 n=1 Tax=Ectocar... [more]
A0A7R9U5Q8_9STRA2.720e-755.00Hypothetical protein n=2 Tax=Pinguiococcus pyrenoi... [more]
A0A485LE76_9STRA7.250e-761.11Aste57867_20104 protein n=1 Tax=Aphanomyces stella... [more]
A0A1I8BMN1_MELHA1.290e-661.11Mesencephalic astrocyte-derived neurotrophic facto... [more]
A0A6V7TKP1_9BILA1.350e-661.11Mesencephalic astrocyte-derived neurotrophic facto... [more]
A0A0A7CP90_9STRA1.390e-655.56Secreted protein n=1 Tax=Achlya hypogyna TaxID=120... [more]
A0A1W0A1F5_9STRA1.890e-652.78Uncharacterized protein n=1 Tax=Thraustotheca clav... [more]
A0A425D6G0_9STRA1.970e-658.33ARMET_C domain-containing protein n=5 Tax=Aphanomy... [more]
K0TB99_THAOC8.720e-658.33Uncharacterized protein n=1 Tax=Thalassiosira ocea... [more]
A0A7S3L3W4_9STRA2.030e-558.33Hypothetical protein n=1 Tax=Amphora coffeiformis ... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig153100contigH-elongata_contig153100:1258..1395 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score80.9
Seed ortholog evalue1.7e-13
Seed eggNOG ortholog2880.D7FVE4
Preferred namePDILT
KEGG koko:K09510,ko:K09584,ko:K20354
KEGG Pathwayko04141,map04141
GOsGO:0003674,GO:0003756,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0006457,GO:0006950,GO:0008150,GO:0009966,GO:0009987,GO:0010646,GO:0010941,GO:0012505,GO:0016853,GO:0016860,GO:0016864,GO:0023051,GO:0033554,GO:0034976,GO:0042981,GO:0043067,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044464,GO:0048583,GO:0050789,GO:0050794,GO:0050896,GO:0051716,GO:0065007,GO:0080134,GO:0080135,GO:0140096,GO:1900407,GO:1902175,GO:1902531,GO:1902882,GO:1903201,GO:2001233,GO:2001242
EggNOG free text desc.cell redox homeostasis
EggNOG OGsCOG0484@1,COG0526@1,KOG0191@2759,KOG0714@2759
Ec32 ortholog descriptionHeat shock protein 40 like protein
Ec32 orthologEc-14_000800.1
EC5.3.4.1
COG Functional cat.CO
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03110,ko04131
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size138
Cds size138
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929905.1680522-CDS-H-elongata_contig153100:1257..13951622929905.1680522-CDS-H-elongata_contig153100:1257..1395Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig153100 1258..1395 -
1691679202.5584464-CDS-H-elongata_contig153100:1257..13951691679202.5584464-CDS-H-elongata_contig153100:1257..1395Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig153100 1258..1395 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig153100.3507.1prot_H-elongata_contig153100.3507.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig153100 1258..1395 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig153100.3507.1

>prot_H-elongata_contig153100.3507.1 ID=prot_H-elongata_contig153100.3507.1|Name=mRNA_H-elongata_contig153100.3507.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=46bp
DFSKLRVKQLRELLLAHGETCEGCVEKVDFEKKLREAVLAAHGAR*
back to top

mRNA from alignment at H-elongata_contig153100:1258..1395-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig153100.3507.1 ID=mRNA_H-elongata_contig153100.3507.1|Name=mRNA_H-elongata_contig153100.3507.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=138bp|location=Sequence derived from alignment at H-elongata_contig153100:1258..1395- (Himanthalia elongata Himel1 dioecious)
GATTTCTCGAAGCTCCGCGTGAAGCAGCTGCGAGAGCTGCTCCTCGCTCA
CGGAGAGACGTGCGAAGGCTGCGTGGAGAAGGTCGACTTCGAGAAGAAGC
TGAGAGAAGCCGTACTGGCCGCTCATGGGGCCCGGTGA
back to top

Coding sequence (CDS) from alignment at H-elongata_contig153100:1258..1395-

>mRNA_H-elongata_contig153100.3507.1 ID=mRNA_H-elongata_contig153100.3507.1|Name=mRNA_H-elongata_contig153100.3507.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=276bp|location=Sequence derived from alignment at H-elongata_contig153100:1258..1395- (Himanthalia elongata Himel1 dioecious)
GATTTCTCGAAGCTCCGCGTGAAGCAGCTGCGAGAGCTGCTCCTCGCTCA
CGGAGAGACGTGCGAAGGCTGCGTGGAGAAGGTCGACTTCGAGAAGAAGC
TGAGAGAAGCCGTACTGGCCGCTCATGGGGCCCGGTGAGATTTCTCGAAG
CTCCGCGTGAAGCAGCTGCGAGAGCTGCTCCTCGCTCACGGAGAGACGTG
CGAAGGCTGCGTGGAGAAGGTCGACTTCGAGAAGAAGCTGAGAGAAGCCG
TACTGGCCGCTCATGGGGCCCGGTGA
back to top