mRNA_H-elongata_contig153020.3503.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig153020.3503.1
Unique NamemRNA_H-elongata_contig153020.3503.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig153020.3503.1 vs. uniprot
Match: A0A6H5KMQ7_9PHAE (PlsC domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KMQ7_9PHAE)

HSP 1 Score: 102 bits (255), Expect = 2.340e-25
Identity = 43/61 (70.49%), Postives = 51/61 (83.61%), Query Frame = 1 
Query:    1 PLLGGICRMVGHFPVYFTSKDQNTFTVDKTEQAKVSEKMKAHIDGMGSLCIFPGGKINRNP 183
            P LGG+CRMVGHFPV F SKD+N+F VDK EQAK+ EK+KAH++  G LC+FP GKINRNP
Sbjct:  122 PFLGGVCRMVGHFPVLFRSKDENSFAVDKPEQAKIMEKVKAHVESDGCLCLFPEGKINRNP 182
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BLAST of mRNA_H-elongata_contig153020.3503.1 vs. uniprot
Match: A0A1X0P9F0_9TRYP (Putative acyltransferase n=1 Tax=Trypanosoma theileri TaxID=67003 RepID=A0A1X0P9F0_9TRYP)

HSP 1 Score: 73.9 bits (180), Expect = 3.350e-14
Identity = 31/61 (50.82%), Postives = 42/61 (68.85%), Query Frame = 1 
Query:    1 PLLGGICRMVGHFPVYFTSKDQNTFTVDKTEQAKVSEKMKAHIDGMGSLCIFPGGKINRNP 183
            PL+G + R  GHFPVYFTS + +TF+VDKT+QA V+E+ +  +   G LC FP G +N  P
Sbjct:  142 PLMGRVIRACGHFPVYFTSTEASTFSVDKTKQAAVTEEAETFLSRGGMLCFFPEGAVNHTP 202
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BLAST of mRNA_H-elongata_contig153020.3503.1 vs. uniprot
Match: A0A3R7PX57_9TRYP (Acyltransferase n=1 Tax=Trypanosoma conorhini TaxID=83891 RepID=A0A3R7PX57_9TRYP)

HSP 1 Score: 72.8 bits (177), Expect = 8.830e-14
Identity = 29/61 (47.54%), Postives = 43/61 (70.49%), Query Frame = 1 
Query:    1 PLLGGICRMVGHFPVYFTSKDQNTFTVDKTEQAKVSEKMKAHIDGMGSLCIFPGGKINRNP 183
            PL+GG+ R  GHFPV+F S+D+N+F VD+ +QA V  +++  +D  G +C FP G +NR P
Sbjct:  141 PLMGGVIRACGHFPVHFNSQDENSFAVDREKQALVMAEVETFLDQGGVICFFPEGVLNRTP 201
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BLAST of mRNA_H-elongata_contig153020.3503.1 vs. uniprot
Match: F9W8I3_TRYCI (WGS project CAEQ00000000 data, annotated contig 1735 n=1 Tax=Trypanosoma congolense (strain IL3000) TaxID=1068625 RepID=F9W8I3_TRYCI)

HSP 1 Score: 72.0 bits (175), Expect = 1.770e-13
Identity = 30/61 (49.18%), Postives = 42/61 (68.85%), Query Frame = 1 
Query:    1 PLLGGICRMVGHFPVYFTSKDQNTFTVDKTEQAKVSEKMKAHIDGMGSLCIFPGGKINRNP 183
            PLLG +  + GHFP+YFTS  +N+F+VDK +QA+V       I+  G+LC+FP G +NR P
Sbjct:  146 PLLGKVIDVCGHFPIYFTSSSENSFSVDKEKQAQVKVATDEFINSGGNLCLFPEGALNRTP 206
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BLAST of mRNA_H-elongata_contig153020.3503.1 vs. uniprot
Match: A0A8J2SKK6_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SKK6_9STRA)

HSP 1 Score: 70.5 bits (171), Expect = 5.860e-13
Identity = 31/59 (52.54%), Postives = 41/59 (69.49%), Query Frame = 1 
Query:    1 PLLGGICRMVGHFPVYFTSKDQNTFTVDKTEQAKVSEKMKAHIDGMGSLCIFPGGKINR 177
            P+LG I R+VGH PVYF   D+  F+VDKT QA V+E+++AH+ G G L   P G +NR
Sbjct:  125 PVLGEIFRLVGHEPVYFLKDDEGKFSVDKTRQAPVNERIRAHVAGGGVLAFCPEGTVNR 183
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BLAST of mRNA_H-elongata_contig153020.3503.1 vs. uniprot
Match: A0A813JWT5_POLGL (Hypothetical protein (Fragment) n=2 Tax=Polarella glacialis TaxID=89957 RepID=A0A813JWT5_POLGL)

HSP 1 Score: 68.2 bits (165), Expect = 5.640e-12
Identity = 27/61 (44.26%), Postives = 39/61 (63.93%), Query Frame = 1 
Query:    1 PLLGGICRMVGHFPVYFTSKDQNTFTVDKTEQAKVSEKMKAHIDGMGSLCIFPGGKINRNP 183
            P+L  +CR +GH+PVYF+SK    FTVDK +     +K+  H++  G LC FP G++N  P
Sbjct:  138 PILSTMCRSIGHYPVYFSSKTDGVFTVDKEKNEIEDKKVNLHLNSGGWLCFFPEGQMNSEP 198
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BLAST of mRNA_H-elongata_contig153020.3503.1 vs. uniprot
Match: A0A640KSR3_LEITA (PlsC domain-containing protein n=1 Tax=Leishmania tarentolae TaxID=5689 RepID=A0A640KSR3_LEITA)

HSP 1 Score: 67.0 bits (162), Expect = 1.230e-11
Identity = 30/61 (49.18%), Postives = 40/61 (65.57%), Query Frame = 1 
Query:    1 PLLGGICRMVGHFPVYFTSKDQNTFTVDKTEQAKVSEKMKAHIDGMGSLCIFPGGKINRNP 183
            PL G +  M GHFPVYF+S D N+F+V+K +QA V+  +K  +   GSL  FP G +NR P
Sbjct:  146 PLFGTVIAMCGHFPVYFSSTDANSFSVNKEKQAAVAADVKDFLSKGGSLSFFPEGVLNRTP 206
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BLAST of mRNA_H-elongata_contig153020.3503.1 vs. uniprot
Match: A0A7S1MMV3_ALECA (Hypothetical protein n=1 Tax=Alexandrium catenella TaxID=2925 RepID=A0A7S1MMV3_ALECA)

HSP 1 Score: 67.0 bits (162), Expect = 1.250e-11
Identity = 28/61 (45.90%), Postives = 37/61 (60.66%), Query Frame = 1 
Query:    1 PLLGGICRMVGHFPVYFTSKDQNTFTVDKTEQAKVSEKMKAHIDGMGSLCIFPGGKINRNP 183
            PLLG +CR VGHFPVYF+S     F VD+     V +++  H+   G LC FP G+ N+ P
Sbjct:  110 PLLGTVCRSVGHFPVYFSSAKDGVFKVDRDRTEAVEKQVDEHLKTGGWLCFFPEGQTNKTP 170
[Close]
BLAST of mRNA_H-elongata_contig153020.3503.1 vs. uniprot
Match: E9AE90_LEIMA (PlsC domain-containing protein n=5 Tax=Leishmania TaxID=38568 RepID=E9AE90_LEIMA)

HSP 1 Score: 65.5 bits (158), Expect = 4.500e-11
Identity = 28/61 (45.90%), Postives = 40/61 (65.57%), Query Frame = 1 
Query:    1 PLLGGICRMVGHFPVYFTSKDQNTFTVDKTEQAKVSEKMKAHIDGMGSLCIFPGGKINRNP 183
            PL G +  + GHFPVYF+S D N+F+VDK +QA V+  ++  +    SLC +P G +NR P
Sbjct:  146 PLFGTVIVLCGHFPVYFSSTDANSFSVDKDKQAAVAADVENWVKQGKSLCFYPEGMVNRTP 206
[Close]
BLAST of mRNA_H-elongata_contig153020.3503.1 vs. uniprot
Match: S9WCE4_9TRYP (Acyltransferase n=2 Tax=Strigomonas culicis TaxID=28005 RepID=S9WCE4_9TRYP)

HSP 1 Score: 64.7 bits (156), Expect = 8.490e-11
Identity = 27/61 (44.26%), Postives = 42/61 (68.85%), Query Frame = 1 
Query:    1 PLLGGICRMVGHFPVYFTSKDQNTFTVDKTEQAKVSEKMKAHIDGMGSLCIFPGGKINRNP 183
            PL G + R  G FPVYF+S++ ++F+V+K +Q KV+E+++  +   GSL  FP G +NR P
Sbjct:  144 PLFGHVIRACGQFPVYFSSEESDSFSVEKEKQMKVAEEVEEFLSHGGSLSFFPEGALNRTP 204
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig153020.3503.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 14
Match NameE-valueIdentityDescription
A0A6H5KMQ7_9PHAE2.340e-2570.49PlsC domain-containing protein n=2 Tax=Ectocarpus ... [more]
A0A1X0P9F0_9TRYP3.350e-1450.82Putative acyltransferase n=1 Tax=Trypanosoma theil... [more]
A0A3R7PX57_9TRYP8.830e-1447.54Acyltransferase n=1 Tax=Trypanosoma conorhini TaxI... [more]
F9W8I3_TRYCI1.770e-1349.18WGS project CAEQ00000000 data, annotated contig 17... [more]
A0A8J2SKK6_9STRA5.860e-1352.54Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A813JWT5_POLGL5.640e-1244.26Hypothetical protein (Fragment) n=2 Tax=Polarella ... [more]
A0A640KSR3_LEITA1.230e-1149.18PlsC domain-containing protein n=1 Tax=Leishmania ... [more]
A0A7S1MMV3_ALECA1.250e-1145.90Hypothetical protein n=1 Tax=Alexandrium catenella... [more]
E9AE90_LEIMA4.500e-1145.90PlsC domain-containing protein n=5 Tax=Leishmania ... [more]
S9WCE4_9TRYP8.490e-1144.26Acyltransferase n=2 Tax=Strigomonas culicis TaxID=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig153020contigH-elongata_contig153020:2..1286 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score74.3
Seed ortholog evalue1.9e-11
Seed eggNOG ortholog2880.D7FWP2
EggNOG free text desc.Acyltransferase
EggNOG OGs2DZHH@1,2S71D@2759
COG Functional cat.I
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size183
Cds size159
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig153020.3503.1prot_H-elongata_contig153020.3503.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig153020 2..1262 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929904.7295616-CDS-H-elongata_contig153020:1..701622929904.7295616-CDS-H-elongata_contig153020:1..70Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig153020 2..70 -
1691679202.4356847-CDS-H-elongata_contig153020:1..701691679202.4356847-CDS-H-elongata_contig153020:1..70Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig153020 2..70 -
1622929904.7498276-CDS-H-elongata_contig153020:1172..12621622929904.7498276-CDS-H-elongata_contig153020:1172..1262Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig153020 1173..1262 -
1691679202.449933-CDS-H-elongata_contig153020:1172..12621691679202.449933-CDS-H-elongata_contig153020:1172..1262Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig153020 1173..1262 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929904.76269-UTR-H-elongata_contig153020:1262..12861622929904.76269-UTR-H-elongata_contig153020:1262..1286Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig153020 1263..1286 -
1691679202.462995-UTR-H-elongata_contig153020:1262..12861691679202.462995-UTR-H-elongata_contig153020:1262..1286Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig153020 1263..1286 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig153020.3503.1

>prot_H-elongata_contig153020.3503.1 ID=prot_H-elongata_contig153020.3503.1|Name=mRNA_H-elongata_contig153020.3503.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=53bp
MVGHFPVYFTSKDQNTFTVDKTEQAKVSEKMKAHIDGMGSLCIFPGGKIN
RNP
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mRNA from alignment at H-elongata_contig153020:2..1286-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig153020.3503.1 ID=mRNA_H-elongata_contig153020.3503.1|Name=mRNA_H-elongata_contig153020.3503.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1285bp|location=Sequence derived from alignment at H-elongata_contig153020:2..1286- (Himanthalia elongata Himel1 dioecious)
CCGCTCCTAGGGGGTATATGCCGCATGGTGGGCCATTTTCCCGTTTACTT
CACGAGCAAGGACCAAAATACGTTCACCGTTGACAAGACGGAGCAGGCTA
AGGTGTCCGAAAAGGTAACGACCAACTTAGACCGCGTTAAGATAGATGTA
CAGATAGATGAGGTCTGGGACGTCGTTTCATAGAGGATCGTGTGCGTACT
TATCGTATTATCCTCTCGTTCAACGACATTCTCCAACGGAATGGCCAAAT
GCTTTAGCATAGAAACCACCGTGCGCACGAGGGAGTTGCTATGGGTGAGG
GTGTTTTCACGCATAAGCGACGATCATAGATTTTGCTCAAACGAACGATG
TATGAAAAGTTCGAAAACGGGGGGCAAAAAAAAAGAAGGGACGGACTGCG
TGGCTGATGACGTTTGGGATTGGTTGGGAATGGAAGATCGCTGCACTAGA
ACCTATAAAATGGTTCGAGATATTGAATGAAGGAGCCTCCAGGTTGATGA
CAACATTAAGGGAGAAGGAAGAAGAGGCAGGCAAGGTCGTGGTCAGGTGA
CCGTAAGAAAATTCAGACGTCTCAGAGAAGCGCTCATTTGACCGCCTCAG
GGTTCCCTGAAGCGGCGCTGGCTGCGTATGCCTGATAAGACTTCTGTATT
CATTGACAAGTACACCCACCAAACTCCTGCGCCGATTGCCAGTAGTTTAC
GTTTCTTCGCCTAGCGAGAGTGAATCGCTGTCTTTAGAGTCGCACGCACA
CGCCTCTTCTTTATAGCAACACCTCTGCTCTGCCGTGCTTTTTCATTATT
TTTATGTGTTGTGTTGGTCTTAACTCCCGGGAGGTAAATTTCTATTTAGC
TATCTGCCGAGGGGGTTGGAGGCGTGGGGTGGGTGGGGGGGTTAGTTATT
AAGACTTTGTTTTGTTTGTTTTTCTTTCCCTGTACAGCAGACCACTAACC
GGATTGGCAATCGCGTACGAGGTATAGTATAGTATAGTATACTGGGTATG
GTTATTGTGAAGAACATACATACACATCCACACATATTTTTCACCCCAAC
AAGCGGTAGCTTCACCTTTTCGCGACTAAGAACGGCCTTGTGAGTACAAA
GCTTTTTTTTTTTTACAAAATGCATGAAACGGTTGCTTAGATCCCCTGAG
ATCCTAATTACCCGAACCCTCGCATCCTTTAAAACTTACCCCAATGACTC
CCCCCCCCCGTCCTAGATGAAAGCTCATATCGACGGAATGGGCAGCTTGT
GTATCTTCCCGGGGGGAAAGATCAACCGTAATCCT
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Coding sequence (CDS) from alignment at H-elongata_contig153020:2..1286-

>mRNA_H-elongata_contig153020.3503.1 ID=mRNA_H-elongata_contig153020.3503.1|Name=mRNA_H-elongata_contig153020.3503.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=318bp|location=Sequence derived from alignment at H-elongata_contig153020:2..1286- (Himanthalia elongata Himel1 dioecious)
ATGGTGGGCCATTTTCCCGTTTACTTCACGAGCAAGGACCAAAATACGTT
CACCGTTGACAAGACGGAGCAGGCTAAGGTGTCCGAAAAGATGGTGGGCC
ATTTTCCCGTTTACTTCACGAGCAAGGACCAAAATACGTTCACCGTTGAC
AAGACGGAGCAGGCTAAGGTGTCCGAAAAGATGAAAGCTCATATCGACGG
AATGGGCAGCTTGTGTATCTTCCCGGGGGGAAAGATCAACCGTAATCCTA
TGAAAGCTCATATCGACGGAATGGGCAGCTTGTGTATCTTCCCGGGGGGA
AAGATCAACCGTAATCCT
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