mRNA_H-elongata_contig15299.3501.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig15299.3501.1
Unique NamemRNA_H-elongata_contig15299.3501.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig15299.3501.1 vs. uniprot
Match: A0A0C2WN23_AMAMK (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Amanita muscaria (strain Koide BX008) TaxID=946122 RepID=A0A0C2WN23_AMAMK)

HSP 1 Score: 126 bits (317), Expect = 1.320e-30
Identity = 67/164 (40.85%), Postives = 99/164 (60.37%), Query Frame = 1
Query:    1 AMESPEWNDWRKAEETKMSGMVENSVYKQVAWTKDKLVVGTKMLYKRKVGQDGKVEKYKCRLVTQGFW*VEGARYTEKYSPTPSTASIRVLLATAAAKDGELRHFEAEQAFLKADIDEELYI*IPEEFQKFPGAVRRLNKAIYGLVQAGRCWNNKFCGDLIRAG 492
            AM   +  +WRKA E ++    +  V+++V   +D+ ++G+K ++K K G DG+VEKYK RLV QGF  VEG  Y E ++P   + SIR+LLA AA  D E+   + + AFL  +++EE+Y+ +P   +    AV RL KA+YGL QA R W  K   +L   G
Sbjct: 1001 AMSQEDAAEWRKACEAELEMFKQLGVFEEVPRPRDRKIIGSKWVFKTKTGPDGQVEKYKARLVAQGFSQVEGIDYNETFAPVTKSNSIRLLLALAARHDWEIHQMDVKSAFLNGELEEEIYMKVPPGHKASADAVWRLKKALYGLKQASREWYKKLSAELKTLG 1164          
BLAST of mRNA_H-elongata_contig15299.3501.1 vs. uniprot
Match: A0A7D9D6Q5_PARCT (Retrovirus-related Pol poly from transposon TNT 1-94 n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9D6Q5_PARCT)

HSP 1 Score: 115 bits (289), Expect = 7.350e-27
Identity = 57/148 (38.51%), Postives = 98/148 (66.22%), Query Frame = 1
Query:   25 DWRKAEETKMSGMVENSVYKQVAWTKDKLVVGTKMLYKRKVGQDGKVEKYKCRLVTQGFW*VEGARYTEKYSPTPSTASIRVLLATAAAKDGELRHFEAEQAFLKADIDEELYI*IPEEF--QKFPGAVRRLNKAIYGLVQAGRCWNN 462
            +W++A +++ + ++EN  ++ V+  K K VVG+K ++K K  ++G V++YK RLV QG+   EG  Y+E +SP     +IR LLA + AK+ E+   + + AFL+ +++EE+Y+  P+ +  ++ P  V +L K+IYGL Q+ RCWNN
Sbjct:  824 EWKQATDSENNSLIENETWELVSLPKGKNVVGSKWVFKVKTDENGCVQRYKARLVAQGYTQAEGVDYSEVFSPVVRNTTIRSLLALSNAKNWEVHQMDVKTAFLQGNLEEEIYMRQPDGYVNKELPNHVCKLKKSIYGLKQSARCWNN 971          
BLAST of mRNA_H-elongata_contig15299.3501.1 vs. uniprot
Match: A0A5N6LW24_9ASTR (Integrase catalytic domain-containing protein n=2 Tax=Mikania micrantha TaxID=192012 RepID=A0A5N6LW24_9ASTR)

HSP 1 Score: 115 bits (288), Expect = 9.980e-27
Identity = 65/158 (41.14%), Postives = 88/158 (55.70%), Query Frame = 1
Query:    1 AMESPEWNDWRKAEETKMSGMVENSVYKQVAWTKDKLVVGTKMLYKRKVGQDGKVEKYKCRLVTQGFW*VEGARYTEKYSPTPSTASIRVLLATAAAKDGELRHFEAEQAFLKADIDEELYI*IPEEF--QKFPGAVRRLNKAIYGLVQAGRCWNNKF 468
            A+  PE   W  A  ++M  M +N V+  V        VG+K ++KRK    G V  YK RLV +GF   +G  Y E +SP     SIR+LLA AA  D E+   + + AFL   + E++Y+  PE F   K+P  V +LNK+IYGL QA RCWN +F
Sbjct:  472 AISDPESAKWLDAMNSEMQSMRDNQVWDLVELPPGSRAVGSKWIFKRKTDMHGNVHTYKARLVAKGFTQTQGVDYDETFSPVAMIKSIRILLAIAAYYDYEIWQMDVKTAFLNGHLSEDVYMVQPEGFVDPKYPNKVCKLNKSIYGLKQASRCWNLRF 629          
BLAST of mRNA_H-elongata_contig15299.3501.1 vs. uniprot
Match: A0A146LHR9_LYGHE (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=2 Tax=Lygus hesperus TaxID=30085 RepID=A0A146LHR9_LYGHE)

HSP 1 Score: 114 bits (285), Expect = 2.380e-26
Identity = 58/156 (37.18%), Postives = 91/156 (58.33%), Query Frame = 1
Query:   25 DWRKAEETKMSGMVENSVYKQVAWTKDKLVVGTKMLYKRKVGQDGKVEKYKCRLVTQGFW*VEGARYTEKYSPTPSTASIRVLLATAAAKDGELRHFEAEQAFLKADIDEELYI*IPEEFQKFPGAVRRLNKAIYGLVQAGRCWNNKFCGDLIRAG 492
            +W KA ++++  + EN  +        K  + TK +YK K+  DG ++K+K RLV QGF    G  Y + +SP    +++R LL+ AA+K+ +L  F+   AFL   ++EE+YI  PE F      V +LN+++YGL QA RCWN +F   L++ G
Sbjct:  256 NWEKAMQSEIDSLHENKTWTLANLPDGKKAISTKWVYKVKMNPDGTIDKFKARLVVQGFSQRLGIDYEQTFSPVAKASTVRTLLSVAASKNMKLMQFDVSTAFLYGYLEEEIYIKQPEGFDDGSNKVCKLNRSLYGLKQAPRCWNQRFAAFLLKIG 411          
BLAST of mRNA_H-elongata_contig15299.3501.1 vs. uniprot
Match: A0A0J7K725_LASNI (Gag-pol polyprotein n=1 Tax=Lasius niger TaxID=67767 RepID=A0A0J7K725_LASNI)

HSP 1 Score: 114 bits (285), Expect = 2.570e-26
Identity = 56/156 (35.90%), Postives = 98/156 (62.82%), Query Frame = 1
Query:    1 AMESPEWNDWRKAEETKMSGMVENSVYKQVAWTKDKLVVGTKMLYKRKVGQDGKVEKYKCRLVTQGFW*VEGARYTEKYSPTPSTASIRVLLATAAAKDGELRHFEAEQAFLKADIDEELYI*IPEEFQKFPGAVRRLNKAIYGLVQAGRCWNNKF 468
            AM S +   W+ A E ++  + +N  ++ V    DK  + +K ++K K   DG+++++K RLV +GF  +EG  Y+E Y+PT    +I+VLL+ + ++  ++  F+ + AFL  +++EE+Y+ +P+E ++    V +L KA+YGL QA RCWN KF
Sbjct:  641 AMNSSDSKKWKAAIEEELDALNQNDTWELVPLPPDKRSISSKWVFKVKRYPDGRIQRHKARLVARGFAQIEGVDYSETYAPTTRYDTIQVLLSLSVSRGLKISQFDVKTAFLHGELEEEVYMDLPDEVKESTNRVCKLKKALYGLKQAPRCWNRKF 796          
BLAST of mRNA_H-elongata_contig15299.3501.1 vs. uniprot
Match: A0A1R3G1W7_COCAP (Uncharacterized protein n=1 Tax=Corchorus capsularis TaxID=210143 RepID=A0A1R3G1W7_COCAP)

HSP 1 Score: 114 bits (284), Expect = 3.630e-26
Identity = 60/157 (38.22%), Postives = 90/157 (57.32%), Query Frame = 1
Query:   22 NDWRKAEETKMSGMVENSVYKQVAWTKDKLVVGTKMLYKRKVGQDGKVEKYKCRLVTQGFW*VEGARYTEKYSPTPSTASIRVLLATAAAKDGELRHFEAEQAFLKADIDEELYI*IPEEFQKFPGAVRRLNKAIYGLVQAGRCWNNKFCGDLIRAG 492
            NDW+ A ++++  +  N+ +K V     K  +G K ++K K   DG VE+YK RLV +G+   EG  Y + +SP     ++R LL  AAAK+  L   +   AFL  ++DEE+Y+ +PE +    G V RL K++YGL QA R WN K    L++ G
Sbjct:  739 NDWQLAMKSEIKALEANNTWKVVDLPPGKTAIGCKWVFKVKRKADGSVERYKARLVAKGYTQQEGVDYMDTFSPVAKMTTVRTLLTVAAAKNWFLHQCDVNNAFLHGNLDEEVYMKLPEGYSHEKGKVCRLQKSLYGLKQASRQWNAKLTATLLQFG 895          
BLAST of mRNA_H-elongata_contig15299.3501.1 vs. uniprot
Match: UPI0020246435 (hypothetical protein n=2 Tax=Proteus mirabilis TaxID=584 RepID=UPI0020246435)

HSP 1 Score: 113 bits (282), Expect = 3.870e-26
Identity = 65/158 (41.14%), Postives = 92/158 (58.23%), Query Frame = 1
Query:    1 AMESPEWNDWRKAEETKMSGMVENSVYKQVAWTKDKLVVGTKMLYKRKVGQDGKVEKYKCRLVTQGFW*VEGARYTEKYSPTPSTASIRVLLATAAAKDGELRHFEAEQAFLKADIDEELYI*IPEEFQKFPGA--VRRLNKAIYGLVQAGRCWNNKF 468
            AM SP+   W +A +++M  M EN V+  V    D+  +  K ++K+K   DG V  YK RLV +GF  V+G  Y E +SP     S+R++LA AA  D E+   + + AFL   ++EELY+  PE F    GA  V +L ++IYGLVQA R WN +F
Sbjct:   14 AMVSPDSAKWLEAMKSEMGSMYENKVWTLVDLPDDRQAIENKWIFKKKTDADGNVTVYKARLVAKGFRQVQGIDYDETFSPVAMLKSVRIMLAIAAFYDYEIWQMDVKTAFLNGFLEEELYMMQPEGFVDPKGANKVCKLQRSIYGLVQASRSWNKRF 171          
BLAST of mRNA_H-elongata_contig15299.3501.1 vs. uniprot
Match: A0A5N6MMD4_9ASTR (Uncharacterized protein n=6 Tax=Mikania micrantha TaxID=192012 RepID=A0A5N6MMD4_9ASTR)

HSP 1 Score: 112 bits (279), Expect = 1.660e-25
Identity = 64/158 (40.51%), Postives = 88/158 (55.70%), Query Frame = 1
Query:    1 AMESPEWNDWRKAEETKMSGMVENSVYKQVAWTKDKLVVGTKMLYKRKVGQDGKVEKYKCRLVTQGFW*VEGARYTEKYSPTPSTASIRVLLATAAAKDGELRHFEAEQAFLKADIDEELYI*IPEEF--QKFPGAVRRLNKAIYGLVQAGRCWNNKF 468
            A+  P+   W  A  ++M  M +N V+  V        VG+K ++KRK    G V  YK RLV +GF   +G  Y E +SP     SIRVLLA AA  D E+   + + AFL   + E++Y+  P+ F   K+P  V +LNK+IYGL QA RCWN +F
Sbjct:  805 AIIDPKSAKWLDAMNSEMQSMRDNQVWDLVELPPGSRAVGSKWIFKRKTDMHGNVHTYKARLVAKGFTQTQGVDYDETFSPVAMIKSIRVLLAIAAYYDYEIWQMDVKTAFLNGHLSEDVYMVQPDGFIDPKYPSKVCKLNKSIYGLKQASRCWNLRF 962          
BLAST of mRNA_H-elongata_contig15299.3501.1 vs. uniprot
Match: A0A8J6LHG9_TENMO (Uncharacterized protein n=1 Tax=Tenebrio molitor TaxID=7067 RepID=A0A8J6LHG9_TENMO)

HSP 1 Score: 111 bits (278), Expect = 2.340e-25
Identity = 60/155 (38.71%), Postives = 92/155 (59.35%), Query Frame = 1
Query:   28 WRKAEETKMSGMVENSVYKQVAWTKDKLVVGTKMLYKRKVGQDGKVEKYKCRLVTQGFW*VEGARYTEKYSPTPSTASIRVLLATAAAKDGELRHFEAEQAFLKADIDEELYI*IPEEFQKFPGAVRRLNKAIYGLVQAGRCWNNKFCGDLIRAG 492
            W++A + ++  + +N  +  V   K++ V+  + +Y  K  +DG V+KYK RLV +GF  V G  Y E +SP     SIR++L  AA++   LR F+ + AFL  +IDE LY+  P+ +Q     V +LN+++YGL QA RCWN +F   L R G
Sbjct:  213 WKQAMDEEIQSLKQNQTWTLVEPPKNQQVIDNRWVYIIKRNEDGSVQKYKARLVARGFRQVAGVDYNETFSPVTKFDSIRMILCVAASEKLILRQFDVKTAFLYGNIDEILYMQQPDGYQDGTKRVCKLNRSLYGLKQASRCWNQRFTSVLSRLG 367          
BLAST of mRNA_H-elongata_contig15299.3501.1 vs. uniprot
Match: A0A8J6LFP5_TENMO (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Tenebrio molitor TaxID=7067 RepID=A0A8J6LFP5_TENMO)

HSP 1 Score: 111 bits (277), Expect = 2.520e-25
Identity = 59/155 (38.06%), Postives = 91/155 (58.71%), Query Frame = 1
Query:   28 WRKAEETKMSGMVENSVYKQVAWTKDKLVVGTKMLYKRKVGQDGKVEKYKCRLVTQGFW*VEGARYTEKYSPTPSTASIRVLLATAAAKDGELRHFEAEQAFLKADIDEELYI*IPEEFQKFPGAVRRLNKAIYGLVQAGRCWNNKFCGDLIRAG 492
            W++A + ++  + +N  +  V   K++  +  + +YK K  +DG V+KYK RLV +GF  V G  Y E +SP     SIR++L  A ++   LR F+ + AFL  +IDE LY+  P+ +Q     V +LN+++YGL QA RCWN +F   L R G
Sbjct:  148 WKQAMDEEIQSLKQNQTWTLVEPPKNQQFIDNRWVYKIKRNEDGSVQKYKARLVARGFRQVAGVDYNETFSPVTKFDSIRMILCVAVSEKLILRQFDVKTAFLYGNIDEILYMQQPDGYQDGTKRVCKLNRSLYGLKQASRCWNQRFTSVLSRLG 302          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig15299.3501.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0C2WN23_AMAMK1.320e-3040.85Integrase catalytic domain-containing protein (Fra... [more]
A0A7D9D6Q5_PARCT7.350e-2738.51Retrovirus-related Pol poly from transposon TNT 1-... [more]
A0A5N6LW24_9ASTR9.980e-2741.14Integrase catalytic domain-containing protein n=2 ... [more]
A0A146LHR9_LYGHE2.380e-2637.18Retrovirus-related Pol polyprotein from transposon... [more]
A0A0J7K725_LASNI2.570e-2635.90Gag-pol polyprotein n=1 Tax=Lasius niger TaxID=677... [more]
A0A1R3G1W7_COCAP3.630e-2638.22Uncharacterized protein n=1 Tax=Corchorus capsular... [more]
UPI00202464353.870e-2641.14hypothetical protein n=2 Tax=Proteus mirabilis Tax... [more]
A0A5N6MMD4_9ASTR1.660e-2540.51Uncharacterized protein n=6 Tax=Mikania micrantha ... [more]
A0A8J6LHG9_TENMO2.340e-2538.71Uncharacterized protein n=1 Tax=Tenebrio molitor T... [more]
A0A8J6LFP5_TENMO2.520e-2538.06Reverse transcriptase Ty1/copia-type domain-contai... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig15299contigH-elongata_contig15299:7132..7635 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size504
Cds size204
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig15299.3501.1prot_H-elongata_contig15299.3501.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig15299 7135..7338 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929904.4350889-UTR-H-elongata_contig15299:7131..71341622929904.4350889-UTR-H-elongata_contig15299:7131..7134Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig15299 7132..7134 +
1691679202.310069-UTR-H-elongata_contig15299:7131..71341691679202.310069-UTR-H-elongata_contig15299:7131..7134Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig15299 7132..7134 +
1622929904.4740157-UTR-H-elongata_contig15299:7338..76351622929904.4740157-UTR-H-elongata_contig15299:7338..7635Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig15299 7339..7635 +
1691679202.3320994-UTR-H-elongata_contig15299:7338..76351691679202.3320994-UTR-H-elongata_contig15299:7338..7635Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig15299 7339..7635 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929904.4508045-CDS-H-elongata_contig15299:7134..73381622929904.4508045-CDS-H-elongata_contig15299:7134..7338Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15299 7135..7338 +
1691679202.3219836-CDS-H-elongata_contig15299:7134..73381691679202.3219836-CDS-H-elongata_contig15299:7134..7338Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15299 7135..7338 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig15299.3501.1

>prot_H-elongata_contig15299.3501.1 ID=prot_H-elongata_contig15299.3501.1|Name=mRNA_H-elongata_contig15299.3501.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=68bp
MESPEWNDWRKAEETKMSGMVENSVYKQVAWTKDKLVVGTKMLYKRKVGQ
DGKVEKYKCRLVTQGFW*
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mRNA from alignment at H-elongata_contig15299:7132..7635+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig15299.3501.1 ID=mRNA_H-elongata_contig15299.3501.1|Name=mRNA_H-elongata_contig15299.3501.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=504bp|location=Sequence derived from alignment at H-elongata_contig15299:7132..7635+ (Himanthalia elongata Himel1 dioecious)
GCGATGGAATCGCCGGAATGGAACGATTGGCGGAAAGCAGAAGAAACAAA GATGAGTGGCATGGTCGAGAACTCCGTTTATAAGCAGGTGGCTTGGACAA AGGATAAGCTCGTGGTTGGTACAAAAATGCTCTACAAGCGCAAAGTCGGA CAGGACGGCAAGGTCGAAAAATACAAGTGCCGACTTGTAACTCAAGGTTT CTGGTAGGTGGAAGGTGCGCGCTATACGGAAAAATACTCGCCCACGCCAT CGACTGCTTCAATCCGGGTGCTTTTGGCCACAGCAGCGGCCAAGGACGGT GAGCTGCGTCATTTCGAGGCGGAGCAGGCATTCTTGAAAGCGGACATCGA TGAGGAGTTATATATATAGATCCCCGAAGAGTTTCAGAAGTTTCCGGGGG CAGTGAGACGGCTGAACAAGGCCATTTACGGACTCGTACAGGCGGGGAGG TGCTGGAACAACAAGTTCTGCGGCGATTTGATTCGAGCAGGGAAATGCGG ATCC
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Coding sequence (CDS) from alignment at H-elongata_contig15299:7132..7635+

>mRNA_H-elongata_contig15299.3501.1 ID=mRNA_H-elongata_contig15299.3501.1|Name=mRNA_H-elongata_contig15299.3501.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=408bp|location=Sequence derived from alignment at H-elongata_contig15299:7132..7635+ (Himanthalia elongata Himel1 dioecious)
ATGGAATCGCCGGAATGGAACGATTGGCGGAAAGCAGAAGAAACAAAGAT
GAGTGGCATGGTCGAGAACTCCGTTTATAAGCAGGTGGCTTGGACAAAGG
ATAAGCTCGTGGTTGGTACAAAAATGCTCTACAAGCGCAAAGTCGGACAG
GACGGCAAGGTCGAAAAATACAAGTGCCGACTTGTAACTCAAGGTTTCTG
GTAGATGGAATCGCCGGAATGGAACGATTGGCGGAAAGCAGAAGAAACAA
AGATGAGTGGCATGGTCGAGAACTCCGTTTATAAGCAGGTGGCTTGGACA
AAGGATAAGCTCGTGGTTGGTACAAAAATGCTCTACAAGCGCAAAGTCGG
ACAGGACGGCAAGGTCGAAAAATACAAGTGCCGACTTGTAACTCAAGGTT
TCTGGTAG
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