mRNA_H-elongata_contig152944.3500.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig152944.3500.1
Unique NamemRNA_H-elongata_contig152944.3500.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig152944.3500.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig152944contigH-elongata_contig152944:755..1494 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size740
Cds size405
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig152944.3500.1prot_H-elongata_contig152944.3500.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig152944 908..1312 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929904.3498127-UTR-H-elongata_contig152944:754..9071622929904.3498127-UTR-H-elongata_contig152944:754..907Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig152944 755..907 +
1691679202.282049-UTR-H-elongata_contig152944:754..9071691679202.282049-UTR-H-elongata_contig152944:754..907Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig152944 755..907 +
1622929904.3866415-UTR-H-elongata_contig152944:1312..14941622929904.3866415-UTR-H-elongata_contig152944:1312..1494Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig152944 1313..1494 +
1691679202.2989044-UTR-H-elongata_contig152944:1312..14941691679202.2989044-UTR-H-elongata_contig152944:1312..1494Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig152944 1313..1494 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929904.3675678-CDS-H-elongata_contig152944:907..13121622929904.3675678-CDS-H-elongata_contig152944:907..1312Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig152944 908..1312 +
1691679202.2908385-CDS-H-elongata_contig152944:907..13121691679202.2908385-CDS-H-elongata_contig152944:907..1312Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig152944 908..1312 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig152944.3500.1

>prot_H-elongata_contig152944.3500.1 ID=prot_H-elongata_contig152944.3500.1|Name=mRNA_H-elongata_contig152944.3500.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=135bp
MGIEVAGGFFRRTKIEKRDGRGPSRRGTPHDARLDRFQPSCSASYEGSTA
SHPRVQHLAAAGVGDGKGSSALDGGMATLATSRPPLTVCGPTEMVVAGRG
PRRHFSRRLTIAKEDGKGLSRPDEPHGEVHLDRL*
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mRNA from alignment at H-elongata_contig152944:755..1494+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig152944.3500.1 ID=mRNA_H-elongata_contig152944.3500.1|Name=mRNA_H-elongata_contig152944.3500.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=740bp|location=Sequence derived from alignment at H-elongata_contig152944:755..1494+ (Himanthalia elongata Himel1 dioecious)
TCTCGCCCGCATGGTACATCGACGCCGGCATAATTTCGTGCCCGTTGTTC
GGCTCCTGCTGCTTTCGCCGGTGATAGACACCGGAGTTTGGGTCCGCGTG
GAGCGGCGAAGACGTCGGCAACGAACCGTCCGTCTCCGACCGTCGTCGGC
CTGATGGGGATAGAGGTTGCTGGTGGTTTCTTCCGTAGGACGAAGATCGA
AAAGAGGGACGGGAGAGGCCCAAGCCGTCGGGGTACGCCTCATGACGCCC
GCCTCGATCGATTCCAACCTTCGTGCTCTGCTTCTTACGAAGGGTCGACA
GCATCACATCCTCGTGTTCAACATTTGGCTGCTGCTGGTGTCGGCGACGG
GAAGGGGAGCTCGGCTCTGGATGGAGGGATGGCGACGTTAGCAACGAGCC
GTCCGCCTCTAACCGTCTGCGGTCCGACGGAGATGGTCGTGGCTGGCCGT
GGCCCCCGGAGGCATTTCTCCCGGAGGTTGACGATCGCAAAGGAGGACGG
GAAAGGCTTGAGTCGTCCTGACGAGCCTCACGGTGAAGTTCACCTTGATC
GACTCTAGATCCTACAGTTAACCCTGTTTGAGGCGTCGATGAAAGCATCG
CGCTTTCGTGTCCGTTGTTGGGCTGCTGCTGTTGTCGCCGGCGACTAAAG
CTGGAGTTCGACTCCCCCTGGATCGAGATATTCGTCGACAACGAACCGTC
CATTCCTGATCGACGGCGATCCAGCGGAGATGGCGGGAGC
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Coding sequence (CDS) from alignment at H-elongata_contig152944:755..1494+

>mRNA_H-elongata_contig152944.3500.1 ID=mRNA_H-elongata_contig152944.3500.1|Name=mRNA_H-elongata_contig152944.3500.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=810bp|location=Sequence derived from alignment at H-elongata_contig152944:755..1494+ (Himanthalia elongata Himel1 dioecious)
ATGGGGATAGAGGTTGCTGGTGGTTTCTTCCGTAGGACGAAGATCGAAAA
GAGGGACGGGAGAGGCCCAAGCCGTCGGGGTACGCCTCATGACGCCCGCC
TCGATCGATTCCAACCTTCGTGCTCTGCTTCTTACGAAGGGTCGACAGCA
TCACATCCTCGTGTTCAACATTTGGCTGCTGCTGGTGTCGGCGACGGGAA
GGGGAGCTCGGCTCTGGATGGAGGGATGGCGACGTTAGCAACGAGCCGTC
CGCCTCTAACCGTCTGCGGTCCGACGGAGATGGTCGTGGCTGGCCGTGGC
CCCCGGAGGCATTTCTCCCGGAGGTTGACGATCGCAAAGGAGGACGGGAA
AGGCTTGAGTCGTCCTGACGAGCCTCACGGTGAAGTTCACCTTGATCGAC
TCTAGATGGGGATAGAGGTTGCTGGTGGTTTCTTCCGTAGGACGAAGATC
GAAAAGAGGGACGGGAGAGGCCCAAGCCGTCGGGGTACGCCTCATGACGC
CCGCCTCGATCGATTCCAACCTTCGTGCTCTGCTTCTTACGAAGGGTCGA
CAGCATCACATCCTCGTGTTCAACATTTGGCTGCTGCTGGTGTCGGCGAC
GGGAAGGGGAGCTCGGCTCTGGATGGAGGGATGGCGACGTTAGCAACGAG
CCGTCCGCCTCTAACCGTCTGCGGTCCGACGGAGATGGTCGTGGCTGGCC
GTGGCCCCCGGAGGCATTTCTCCCGGAGGTTGACGATCGCAAAGGAGGAC
GGGAAAGGCTTGAGTCGTCCTGACGAGCCTCACGGTGAAGTTCACCTTGA
TCGACTCTAG
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