mRNA_H-elongata_contig152880.3494.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig152880.3494.1
Unique NamemRNA_H-elongata_contig152880.3494.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig152880.3494.1 vs. uniprot
Match: A0A6H5KKI6_9PHAE (Methyltransf_11 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKI6_9PHAE)

HSP 1 Score: 131 bits (329), Expect = 2.550e-35
Identity = 67/90 (74.44%), Postives = 75/90 (83.33%), Query Frame = 1 
Query:    1 FFFHPSRPVGVDPALSGKPSLDLELAQKKATEKRLSLRGVGGVAEHLPFESGSFDAVVSTLVFCSVRDPVAALREVSRVLRPGGKFLFVE 270
            F+    R +GVDP LSG+PS  LE A +KA +  L+LRGVGG+AE LPFE+GSFDAVVSTLVFCSVRDP AALREVSRVLRPGGKFLFVE
Sbjct:  154 FYRRGQRIIGVDPTLSGEPSQALERATEKAQKLGLTLRGVGGIAEELPFETGSFDAVVSTLVFCSVRDPAAALREVSRVLRPGGKFLFVE 243
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BLAST of mRNA_H-elongata_contig152880.3494.1 vs. uniprot
Match: D7FYW0_ECTSI (Methyltransf_11 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYW0_ECTSI)

HSP 1 Score: 113 bits (283), Expect = 2.440e-29
Identity = 63/92 (68.48%), Postives = 69/92 (75.00%), Query Frame = 1 
Query:    4 FFHPSRPVGVDPALSGKPSLD---LELAQKKATEKRLSLRGVGGVAEHLPFESGSFDAVVSTLVFCSVRDPVAALREVSRVLRPGGKFLFVE 270
            F HP    G  P L+ +  LD   LE A +KA +  L+LRGVGG+ E LPFES SFDAVVSTLVFCSVRDP AALREVSRVLRPGGKFLFVE
Sbjct:   61 FLHPCLSPGGSPVLTSR-RLDFPALERATEKAQKLGLTLRGVGGIVEELPFESSSFDAVVSTLVFCSVRDPAAALREVSRVLRPGGKFLFVE 151
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BLAST of mRNA_H-elongata_contig152880.3494.1 vs. uniprot
Match: A0A4D9CZT3_9STRA (Methyltransf_11 domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CZT3_9STRA)

HSP 1 Score: 86.3 bits (212), Expect = 2.580e-18
Identity = 47/82 (57.32%), Postives = 56/82 (68.29%), Query Frame = 1 
Query:   25 VGVDPALSGKPSLDLELAQKKATEKRLSLRGVGGVAEHLPFESGSFDAVVSTLVFCSVRDPVAALREVSRVLRPGGKFLFVE 270
            VG+DP L+      + +AQ KA  + +    + G AE LPF   SFDAVVSTLVFCSV+D   AL EV+RVLRPGGKFLFVE
Sbjct:  136 VGLDPNLNQDA---MSVAQSKAKARNIQWSALEGRAESLPFPDASFDAVVSTLVFCSVQDQARALTEVARVLRPGGKFLFVE 214
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BLAST of mRNA_H-elongata_contig152880.3494.1 vs. uniprot
Match: W7TRI3_9STRA (S-adenosylmethionine-dependent methyltransferase domain-containing protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TRI3_9STRA)

HSP 1 Score: 86.3 bits (212), Expect = 6.250e-18
Identity = 47/82 (57.32%), Postives = 56/82 (68.29%), Query Frame = 1 
Query:   25 VGVDPALSGKPSLDLELAQKKATEKRLSLRGVGGVAEHLPFESGSFDAVVSTLVFCSVRDPVAALREVSRVLRPGGKFLFVE 270
            VG+DP L+      + +AQ KA  + +    + G AE LPF   SFDAVVSTLVFCSV+D   AL EV+RVLRPGGKFLFVE
Sbjct:  232 VGLDPNLNQDA---MSVAQSKAKARNIQWSALEGRAESLPFPDASFDAVVSTLVFCSVQDQARALTEVARVLRPGGKFLFVE 310
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BLAST of mRNA_H-elongata_contig152880.3494.1 vs. uniprot
Match: A0A7S4FE70_9EUGL (Hypothetical protein (Fragment) n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S4FE70_9EUGL)

HSP 1 Score: 78.6 bits (192), Expect = 1.110e-16
Identity = 46/87 (52.87%), Postives = 57/87 (65.52%), Query Frame = 1 
Query:   16 SRPVGVDPALSGKPSLDLELAQKKA--TEKRLSLRGVGGVAEHLPFESGSFDAVVSTLVFCSVRDPVAALREVSRVLRPGGKFLFVE 270
            SR VGV+P L+  P + LE A+     T  R  L  VG  AE LP  S SFD VV+T+V CSVRD  AA RE+ R+LRPGG++LF+E
Sbjct:   50 SRVVGVEPNLAMHP-IALEEARLCGLDTADRSRLELVGAFAEELPLPSASFDVVVATMVMCSVRDVEAAAREIHRILRPGGRYLFIE 135
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BLAST of mRNA_H-elongata_contig152880.3494.1 vs. uniprot
Match: UPI001909E273 (class I SAM-dependent methyltransferase n=1 Tax=Persephonella atlantica TaxID=2699429 RepID=UPI001909E273)

HSP 1 Score: 78.6 bits (192), Expect = 5.600e-16
Identity = 41/74 (55.41%), Postives = 52/74 (70.27%), Query Frame = 1 
Query:   52 KPSLD-LELAQKKATEKRLSLRGVGGVAEHLPFESGSFDAVVSTLVFCSVRDPVAALREVSRVLRPGGKFLFVE 270
            +PS D LE   KKA +  L++R + G AE LPFE  SFD+VVSTLV CSV+ P   LRE+ RVL+P G F+F+E
Sbjct:   66 EPSKDMLEFFLKKAEKYPLNIRVIEGFAEELPFEDSSFDSVVSTLVLCSVKSPQKVLREIRRVLKPDGVFVFIE 139
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BLAST of mRNA_H-elongata_contig152880.3494.1 vs. uniprot
Match: A0A835Z8C0_9STRA (Methyltransf_11 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z8C0_9STRA)

HSP 1 Score: 79.7 bits (195), Expect = 5.800e-16
Identity = 47/94 (50.00%), Postives = 56/94 (59.57%), Query Frame = 1 
Query:   28 GVDPALS-------------GKPSLDLELAQKKATEKRLSLRGVGGVAEHLPFESGSFDAVVSTLVFCSVRDPVAALREVSRVLRPGGKFLFVE 270
            GVDPAL                 +L +  A  KA    + L  VGG AE LP  + S DAVVSTLVFCSV+DP  A+ EV+RVLRPGGK+LF+E
Sbjct:  102 GVDPALEDGAAGGIVRAAQCASAALAVTDAAVKAARLGIDLTAVGGRAEQLPIATASCDAVVSTLVFCSVQDPAQAMSEVARVLRPGGKWLFME 195
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BLAST of mRNA_H-elongata_contig152880.3494.1 vs. uniprot
Match: UPI001930C28A (class I SAM-dependent methyltransferase n=1 Tax=Solirubrobacter sp. CPCC 204708 TaxID=2282478 RepID=UPI001930C28A)

HSP 1 Score: 76.6 bits (187), Expect = 2.280e-15
Identity = 42/87 (48.28%), Postives = 56/87 (64.37%), Query Frame = 1 
Query:   13 PSRPVGVDPALSGKPSLDLELAQKKATEKRLSLRGV-GGVAEHLPFESGSFDAVVSTLVFCSVRDPVAALREVSRVLRPGGKFLFVE 270
            P  P G++  L+     + + A  +   +R   R V G  AE LPFE GSFDAVVST+V C+V DP AA+RE+ RVLRPGG+ +F+E
Sbjct:   46 PHYPDGLEVVLT-----EPDAAMARRLRRRAGARPVIGAGAEALPFEDGSFDAVVSTMVLCTVADPAAAIRELRRVLRPGGRLVFIE 127
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BLAST of mRNA_H-elongata_contig152880.3494.1 vs. uniprot
Match: UPI000E6AC9D9 (class I SAM-dependent methyltransferase n=1 Tax=Indioceanicola profundi TaxID=2220096 RepID=UPI000E6AC9D9)

HSP 1 Score: 76.6 bits (187), Expect = 2.710e-15
Identity = 44/85 (51.76%), Postives = 55/85 (64.71%), Query Frame = 1 
Query:   16 SRPVGVDPALSGKPSLDLELAQKKATEKRLSLRGVGGVAEHLPFESGSFDAVVSTLVFCSVRDPVAALREVSRVLRPGGKFLFVE 270
            S  VGVDP+     S  L +A+K AT  R+ +  +   AE+LPFE+ SFD VV T   CS+ DP+AALRE  RVLRPGG+  FVE
Sbjct:   56 SEVVGVDPS-----SELLAVARKAATTSRVRVSLIERSAENLPFENASFDTVVVTWSLCSIPDPLAALREARRVLRPGGQLCFVE 135
[Close]
BLAST of mRNA_H-elongata_contig152880.3494.1 vs. uniprot
Match: A0A257DJG8_9SPHN (SAM-dependent methyltransferase n=3 Tax=Sphingomonadales TaxID=204457 RepID=A0A257DJG8_9SPHN)

HSP 1 Score: 76.3 bits (186), Expect = 4.090e-15
Identity = 44/81 (54.32%), Postives = 51/81 (62.96%), Query Frame = 1 
Query:   28 GVDPALSGKPSLDLELAQKKATEKRLSLRGVGGVAEHLPFESGSFDAVVSTLVFCSVRDPVAALREVSRVLRPGGKFLFVE 270
            GVDP+    P L L  AQ   +    S     GVAE LPFES SFD VV+T   CSV+DP AAL EV RVLRPGG+ +F+E
Sbjct:   62 GVDPS----PEL-LGRAQDALSRSGRSANFANGVAEALPFESSSFDTVVTTFTLCSVQDPTAALSEVRRVLRPGGRMIFLE 137
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig152880.3494.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KKI6_9PHAE2.550e-3574.44Methyltransf_11 domain-containing protein n=1 Tax=... [more]
D7FYW0_ECTSI2.440e-2968.48Methyltransf_11 domain-containing protein n=1 Tax=... [more]
A0A4D9CZT3_9STRA2.580e-1857.32Methyltransf_11 domain-containing protein n=1 Tax=... [more]
W7TRI3_9STRA6.250e-1857.32S-adenosylmethionine-dependent methyltransferase d... [more]
A0A7S4FE70_9EUGL1.110e-1652.87Hypothetical protein (Fragment) n=1 Tax=Eutreptiel... [more]
UPI001909E2735.600e-1655.41class I SAM-dependent methyltransferase n=1 Tax=Pe... [more]
A0A835Z8C0_9STRA5.800e-1650.00Methyltransf_11 domain-containing protein n=1 Tax=... [more]
UPI001930C28A2.280e-1548.28class I SAM-dependent methyltransferase n=1 Tax=So... [more]
UPI000E6AC9D92.710e-1551.76class I SAM-dependent methyltransferase n=1 Tax=In... [more]
A0A257DJG8_9SPHN4.090e-1554.32SAM-dependent methyltransferase n=3 Tax=Sphingomon... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig152880contigH-elongata_contig152880:159..842 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score115.5
Seed ortholog evalue1.2e-23
Seed eggNOG ortholog2880.D7FYW0
EggNOG free text desc.methyltransferase activity
EggNOG OGsCOG0500@1,KOG4300@2759
COG Functional cat.Q
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionS-adenosyl-L-methionine-dependent methyltransferase
Ec32 orthologEc-19_002680.1
Exons2
Model size270
Cds size270
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929903.8283973-CDS-H-elongata_contig152880:158..2031622929903.8283973-CDS-H-elongata_contig152880:158..203Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig152880 159..203 -
1691679202.0385427-CDS-H-elongata_contig152880:158..2031691679202.0385427-CDS-H-elongata_contig152880:158..203Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig152880 159..203 -
1622929903.8528514-CDS-H-elongata_contig152880:617..8421622929903.8528514-CDS-H-elongata_contig152880:617..842Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig152880 618..842 -
1691679202.0541675-CDS-H-elongata_contig152880:617..8421691679202.0541675-CDS-H-elongata_contig152880:617..842Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig152880 618..842 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig152880.3494.1prot_H-elongata_contig152880.3494.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig152880 159..842 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig152880.3494.1

>prot_H-elongata_contig152880.3494.1 ID=prot_H-elongata_contig152880.3494.1|Name=mRNA_H-elongata_contig152880.3494.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=90bp
FFFHPSRPVGVDPALSGKPSLDLELAQKKATEKRLSLRGVGGVAEHLPFE
SGSFDAVVSTLVFCSVRDPVAALREVSRVLRPGGKFLFVE
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mRNA from alignment at H-elongata_contig152880:159..842-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig152880.3494.1 ID=mRNA_H-elongata_contig152880.3494.1|Name=mRNA_H-elongata_contig152880.3494.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=684bp|location=Sequence derived from alignment at H-elongata_contig152880:159..842- (Himanthalia elongata Himel1 dioecious)
TTTTTCTTTCACCCGAGCCGGCCAGTCGGCGTCGACCCGGCACTATCGGG
AAAGCCTTCGCTGGACCTCGAGTTGGCACAAAAAAAGGCGACGGAGAAGA
GACTGAGCTTGCGTGGGGTCGGCGGAGTGGCGGAACACCTGCCATTCGAG
TCTGGATCGTTCGACGCCGTCGTATCGACGCTCGTGTTTTGCTCAGTCAG
AGATCCTGTGGCTGCTCTACGAGAGGTTTGTTGAACAGGCGCTCGAGCCA
TGTTGGCCCATTGTCTCTGATGAAGGACCCATCTCCCCCCTCCATACCTA
CCCTAGGGAGAAATCATATTTGCCGCAGATTTATTTTAATTTCCAAGCGG
TTGGTCGAGGAAGAGGTCGATCTTCCAATTGCAAAAAACAACCCCACATT
ATACCCGCGGTAGCTCTGGTACTGAAATGAGAAGAAGTACGTGAGGTAGA
TTTGTCCGCGTTATGCCCCTCGTGCGGAAGACCCGCGTTTGAAGCTGATA
TGGAGGTGGCGGGCTCGTTTTTTAGTTCCGTGCGGTGATACAGATGGCCA
TGATTTGCCTTCTGCATTAGCCTGAATCGTTGCACGACGGTGCGGTCGGT
CCACGTGCTGACAAGCTGAGCCGCTCCGTATCCTCGCAGGTTTCCAGAGT
GCTTCGACCAGGAGGAAAATTCTTGTTTGTCGAG
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Coding sequence (CDS) from alignment at H-elongata_contig152880:159..842-

>mRNA_H-elongata_contig152880.3494.1 ID=mRNA_H-elongata_contig152880.3494.1|Name=mRNA_H-elongata_contig152880.3494.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=540bp|location=Sequence derived from alignment at H-elongata_contig152880:159..842- (Himanthalia elongata Himel1 dioecious)
TTTTTCTTTCACCCGAGCCGGCCAGTCGGCGTCGACCCGGCACTATCGGG
AAAGCCTTCGCTGGACCTCGAGTTGGCACAAAAAAAGGCGACGGAGAAGA
GACTGAGCTTGCGTGGGGTCGGCGGAGTGGCGGAACACCTGCCATTCGAG
TCTGGATCGTTCGACGCCGTCGTATCGACGCTCGTGTTTTGCTCAGTCAG
AGATCCTGTGGCTGCTCTACGAGAGTTTTTCTTTCACCCGAGCCGGCCAG
TCGGCGTCGACCCGGCACTATCGGGAAAGCCTTCGCTGGACCTCGAGTTG
GCACAAAAAAAGGCGACGGAGAAGAGACTGAGCTTGCGTGGGGTCGGCGG
AGTGGCGGAACACCTGCCATTCGAGTCTGGATCGTTCGACGCCGTCGTAT
CGACGCTCGTGTTTTGCTCAGTCAGAGATCCTGTGGCTGCTCTACGAGAG
GTTTCCAGAGTGCTTCGACCAGGAGGAAAATTCTTGTTTGTCGAGGTTTC
CAGAGTGCTTCGACCAGGAGGAAAATTCTTGTTTGTCGAG
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