mRNA_H-elongata_contig152871.3493.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig152871.3493.1
Unique NamemRNA_H-elongata_contig152871.3493.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig152871.3493.1 vs. uniprot
Match: A0A6H5KL89_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KL89_9PHAE)

HSP 1 Score: 81.3 bits (199), Expect = 1.850e-16
Identity = 43/95 (45.26%), Postives = 60/95 (63.16%), Query Frame = 1 
Query:    1 GVGLAVRESIARALGPDGIVPEHISARLLKVRVIFRHRAVTTFIVGYAPTETAATCH------KYKFWKELRSTIAEVPASDHLILMIDANARTG 267
            GVG+A++E++  ++G +G   E IS RL+KVR+        TF+VGYAPTET  T        K  FW  L + I EV + DHL++++DANARTG
Sbjct:  181 GVGIAIKEAMWESVGEEGRTVECISPRLMKVRLQIGRTCGVTFVVGYAPTETVRTTAGGDVNAKDSFWTALDAAIREVHSRDHLVVLMDANARTG 275
[Close]
BLAST of mRNA_H-elongata_contig152871.3493.1 vs. uniprot
Match: A0A6H5JMM5_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMM5_9PHAE)

HSP 1 Score: 79.7 bits (195), Expect = 2.410e-16
Identity = 43/95 (45.26%), Postives = 59/95 (62.11%), Query Frame = 1 
Query:    1 GVGLAVRESIARALGPDGIVPEHISARLLKVRVIFRHRAVTTFIVGYAPTETAATCH------KYKFWKELRSTIAEVPASDHLILMIDANARTG 267
            GVG A++E++  ++G +G   E IS RL+KVR+        TF+VGYAPTET  T        K  FW  L + I EV + DHL++++DANARTG
Sbjct:   52 GVGRAIKEAMWESVGEEGRTVECISPRLMKVRLQIGRTCGVTFVVGYAPTETVRTTAGGDVNAKDSFWTALDAAIREVHSRDHLVVLMDANARTG 146
[Close]
BLAST of mRNA_H-elongata_contig152871.3493.1 vs. uniprot
Match: A0A6H5KQ63_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQ63_9PHAE)

HSP 1 Score: 81.6 bits (200), Expect = 2.990e-16
Identity = 43/95 (45.26%), Postives = 61/95 (64.21%), Query Frame = 1 
Query:    1 GVGLAVRESIARALGPDGIVPEHISARLLKVRVIFRHRAVTTFIVGYAPTETAATCH------KYKFWKELRSTIAEVPASDHLILMIDANARTG 267
            GVG+A++E++ +++G +G   E IS RL+KVR+        TF+VGYAPTET  T        K  FW  L + I EV + DHL++++DANARTG
Sbjct:   52 GVGIAIKEAMWQSVGEEGRTVECISPRLMKVRLQIGRTCGVTFVVGYAPTETVRTTAGGDVNAKDSFWTALDAAIREVHSRDHLVVLMDANARTG 146
[Close]
BLAST of mRNA_H-elongata_contig152871.3493.1 vs. uniprot
Match: A0A6H5KBZ6_9PHAE (Endo/exonuclease/phosphatase domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBZ6_9PHAE)

HSP 1 Score: 81.3 bits (199), Expect = 2.990e-16
Identity = 43/95 (45.26%), Postives = 60/95 (63.16%), Query Frame = 1 
Query:    1 GVGLAVRESIARALGPDGIVPEHISARLLKVRVIFRHRAVTTFIVGYAPTETAATCH------KYKFWKELRSTIAEVPASDHLILMIDANARTG 267
            GVG+A++E++  ++G +G   E IS RL+KVR+        TF+VGYAPTET  T        K  FW  L + I EV + DHL++++DANARTG
Sbjct:   52 GVGIAIKEAMWESVGEEGRTVECISPRLMKVRLQIGRTCGVTFVVGYAPTETVRTTAGGDVNAKDSFWTALDAAIREVHSRDHLVVLMDANARTG 146
[Close]
BLAST of mRNA_H-elongata_contig152871.3493.1 vs. uniprot
Match: A0A6H5K3Q1_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3Q1_9PHAE)

HSP 1 Score: 81.6 bits (200), Expect = 3.830e-16
Identity = 43/95 (45.26%), Postives = 60/95 (63.16%), Query Frame = 1 
Query:    1 GVGLAVRESIARALGPDGIVPEHISARLLKVRVIFRHRAVTTFIVGYAPTETAATCH------KYKFWKELRSTIAEVPASDHLILMIDANARTG 267
            GVG+A++E++  ++G +G   E IS RL+KVR+        TF+VGYAPTET  T        K  FW  L + I EV + DHL++++DANARTG
Sbjct:  249 GVGIAIKEAMWESVGEEGRTVECISPRLMKVRLQIGRTCGVTFLVGYAPTETVRTTEGCDVNAKDSFWTALDAAIREVHSRDHLVVLMDANARTG 343
[Close]
BLAST of mRNA_H-elongata_contig152871.3493.1 vs. uniprot
Match: A0A6H5KEC1_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEC1_9PHAE)

HSP 1 Score: 81.6 bits (200), Expect = 3.940e-16
Identity = 43/95 (45.26%), Postives = 60/95 (63.16%), Query Frame = 1 
Query:    1 GVGLAVRESIARALGPDGIVPEHISARLLKVRVIFRHRAVTTFIVGYAPTETAATCH------KYKFWKELRSTIAEVPASDHLILMIDANARTG 267
            GVG+A++E++  ++G +G   E IS RL+KVR+        TF+VGYAPTET  T        K  FW  L + I EV + DHL++++DANARTG
Sbjct:  235 GVGIAIKEAMWESVGEEGRTVECISPRLMKVRLQIGRTCGVTFVVGYAPTETVRTTAGGDVNAKDSFWTALDAAIREVHSRDHLVMLMDANARTG 329
[Close]
BLAST of mRNA_H-elongata_contig152871.3493.1 vs. uniprot
Match: A0A6H5JII6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JII6_9PHAE)

HSP 1 Score: 81.3 bits (199), Expect = 4.610e-16
Identity = 43/95 (45.26%), Postives = 60/95 (63.16%), Query Frame = 1 
Query:    1 GVGLAVRESIARALGPDGIVPEHISARLLKVRVIFRHRAVTTFIVGYAPTETAATCH------KYKFWKELRSTIAEVPASDHLILMIDANARTG 267
            GVG+A++E++  ++G +G   E IS RL+KVR+        TF+VGYAPTET  T        K  FW  L + I EV + DHL++++DANARTG
Sbjct:   52 GVGIAIKEAMWESVGEEGRTVECISPRLMKVRLQIGRTCGVTFVVGYAPTETVRTTAGGDVNAKDSFWTALDAAIREVHSRDHLVVLMDANARTG 146
[Close]
BLAST of mRNA_H-elongata_contig152871.3493.1 vs. uniprot
Match: A0A6H5KCV1_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCV1_9PHAE)

HSP 1 Score: 81.3 bits (199), Expect = 4.680e-16
Identity = 43/95 (45.26%), Postives = 60/95 (63.16%), Query Frame = 1 
Query:    1 GVGLAVRESIARALGPDGIVPEHISARLLKVRVIFRHRAVTTFIVGYAPTETAATCH------KYKFWKELRSTIAEVPASDHLILMIDANARTG 267
            GVG+A++E++  ++G +G   E IS RL+KVR+        TF+VGYAPTET  T        K  FW  L + I EV + DHL++++DANARTG
Sbjct:   84 GVGIAIKEAMWESVGEEGRTVECISPRLMKVRLQIGRTCGVTFVVGYAPTETVRTTAGGDDNAKDSFWTALDAAIREVHSRDHLVVLMDANARTG 178
[Close]
BLAST of mRNA_H-elongata_contig152871.3493.1 vs. uniprot
Match: A0A6H5JMB4_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMB4_9PHAE)

HSP 1 Score: 81.3 bits (199), Expect = 5.250e-16
Identity = 43/95 (45.26%), Postives = 60/95 (63.16%), Query Frame = 1 
Query:    1 GVGLAVRESIARALGPDGIVPEHISARLLKVRVIFRHRAVTTFIVGYAPTETAATCH------KYKFWKELRSTIAEVPASDHLILMIDANARTG 267
            GVG+A++E++  ++G +G   E IS RL+KVR+        TF+VGYAPTET  T        K  FW  L + I EV + DHL++++DANARTG
Sbjct:  160 GVGIAIKEAMWESVGEEGRTVECISPRLMKVRLQIGRTCGVTFVVGYAPTETVRTTAGGDVNAKDSFWTALDAAIREVHSRDHLVVLMDANARTG 254
[Close]
BLAST of mRNA_H-elongata_contig152871.3493.1 vs. uniprot
Match: A0A6H5L7A7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7A7_9PHAE)

HSP 1 Score: 81.3 bits (199), Expect = 5.330e-16
Identity = 43/95 (45.26%), Postives = 60/95 (63.16%), Query Frame = 1 
Query:    1 GVGLAVRESIARALGPDGIVPEHISARLLKVRVIFRHRAVTTFIVGYAPTETAATCH------KYKFWKELRSTIAEVPASDHLILMIDANARTG 267
            GVG+A++E++  ++G +G   E IS RL+KVR+        TF+VGYAPTET  T        K  FW  L + I EV + DHL++++DANARTG
Sbjct:   52 GVGIAIKEAMWESVGEEGRTVECISPRLMKVRLQIGRTCGVTFVVGYAPTETVRTTAGGDVNAKDSFWTALDAAIREVHSRDHLVVLMDANARTG 146
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig152871.3493.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KL89_9PHAE1.850e-1645.26Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5JMM5_9PHAE2.410e-1645.26Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5KQ63_9PHAE2.990e-1645.26Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5KBZ6_9PHAE2.990e-1645.26Endo/exonuclease/phosphatase domain-containing pro... [more]
A0A6H5K3Q1_9PHAE3.830e-1645.26Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5KEC1_9PHAE3.940e-1645.26Reverse transcriptase domain-containing protein n=... [more]
A0A6H5JII6_9PHAE4.610e-1645.26Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KCV1_9PHAE4.680e-1645.26Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5JMB4_9PHAE5.250e-1645.26Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5L7A7_9PHAE5.330e-1645.26Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig152871contigH-elongata_contig152871:80..346 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size267
Cds size267
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929903.7802176-CDS-H-elongata_contig152871:79..3461622929903.7802176-CDS-H-elongata_contig152871:79..346Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig152871 80..346 -
1691679202.0220182-CDS-H-elongata_contig152871:79..3461691679202.0220182-CDS-H-elongata_contig152871:79..346Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig152871 80..346 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig152871.3493.1prot_H-elongata_contig152871.3493.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig152871 80..346 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig152871.3493.1

>prot_H-elongata_contig152871.3493.1 ID=prot_H-elongata_contig152871.3493.1|Name=mRNA_H-elongata_contig152871.3493.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=89bp
GVGLAVRESIARALGPDGIVPEHISARLLKVRVIFRHRAVTTFIVGYAPT
ETAATCHKYKFWKELRSTIAEVPASDHLILMIDANARTG
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mRNA from alignment at H-elongata_contig152871:80..346-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig152871.3493.1 ID=mRNA_H-elongata_contig152871.3493.1|Name=mRNA_H-elongata_contig152871.3493.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=267bp|location=Sequence derived from alignment at H-elongata_contig152871:80..346- (Himanthalia elongata Himel1 dioecious)
GGAGTTGGTCTGGCTGTCAGGGAGTCTATCGCTCGCGCACTCGGCCCAGA
TGGTATTGTGCCGGAACACATCAGTGCGCGGCTGTTGAAGGTGAGGGTGA
TTTTTAGACACAGAGCCGTCACAACCTTCATCGTAGGATACGCTCCGACT
GAAACAGCAGCCACCTGTCACAAGTATAAGTTCTGGAAGGAACTTCGCAG
CACTATCGCTGAGGTACCTGCCAGCGATCACTTGATTTTGATGATAGATG
CTAACGCCCGTACGGGA
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Coding sequence (CDS) from alignment at H-elongata_contig152871:80..346-

>mRNA_H-elongata_contig152871.3493.1 ID=mRNA_H-elongata_contig152871.3493.1|Name=mRNA_H-elongata_contig152871.3493.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=534bp|location=Sequence derived from alignment at H-elongata_contig152871:80..346- (Himanthalia elongata Himel1 dioecious)
GGAGTTGGTCTGGCTGTCAGGGAGTCTATCGCTCGCGCACTCGGCCCAGA
TGGTATTGTGCCGGAACACATCAGTGCGCGGCTGTTGAAGGTGAGGGTGA
TTTTTAGACACAGAGCCGTCACAACCTTCATCGTAGGATACGCTCCGACT
GAAACAGCAGCCACCTGTCACAAGTATAAGTTCTGGAAGGAACTTCGCAG
CACTATCGCTGAGGTACCTGCCAGCGATCACTTGATTTTGATGATAGATG
CTAACGCCCGTACGGGAGGAGTTGGTCTGGCTGTCAGGGAGTCTATCGCT
CGCGCACTCGGCCCAGATGGTATTGTGCCGGAACACATCAGTGCGCGGCT
GTTGAAGGTGAGGGTGATTTTTAGACACAGAGCCGTCACAACCTTCATCG
TAGGATACGCTCCGACTGAAACAGCAGCCACCTGTCACAAGTATAAGTTC
TGGAAGGAACTTCGCAGCACTATCGCTGAGGTACCTGCCAGCGATCACTT
GATTTTGATGATAGATGCTAACGCCCGTACGGGA
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