mRNA_H-elongata_contig152791.3490.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig152791.3490.1
Unique NamemRNA_H-elongata_contig152791.3490.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig152791.3490.1 vs. uniprot
Match: A0A6H5JNT6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNT6_9PHAE)

HSP 1 Score: 127 bits (318), Expect = 1.390e-32
Identity = 65/73 (89.04%), Postives = 70/73 (95.89%), Query Frame = 1 
Query:    1 QETHEAKFELLMKQQDIQRRNLKSTFEAERKKVFMYCRRAALKRMTRDVKEDADEERRTMNNASDGMDNVFIG 219
            +ETHEAK+ELL+KQQDIQRRNLKSTFEAERKKV MYCRRAALKRMTRD+KEDADEERRTM N SDGMDNVF+G
Sbjct:  301 EETHEAKYELLVKQQDIQRRNLKSTFEAERKKVAMYCRRAALKRMTRDIKEDADEERRTMANKSDGMDNVFLG 373
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BLAST of mRNA_H-elongata_contig152791.3490.1 vs. uniprot
Match: A0A836CAU2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CAU2_9STRA)

HSP 1 Score: 80.9 bits (198), Expect = 3.680e-16
Identity = 44/70 (62.86%), Postives = 51/70 (72.86%), Query Frame = 1 
Query:    1 QETHEAKFELLMKQQDIQRRNLKSTFEAERKKVFMYCRRAALKRMTRDVKEDADEERRTMNNASDGMDNV 210
            +ETHEAK EL+ KQQ+I           ERKKV MYCRRAALKRMTRD+KE+ADE+RR M   SDGM N+
Sbjct:  248 EETHEAKLELVKKQQEIXXXXXXXXXXXERKKVIMYCRRAALKRMTRDIKEEADEDRRIMAQKSDGMKNL 317
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BLAST of mRNA_H-elongata_contig152791.3490.1 vs. uniprot
Match: D7G7B2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7B2_ECTSI)

HSP 1 Score: 59.3 bits (142), Expect = 6.670e-9
Identity = 30/33 (90.91%), Postives = 33/33 (100.00%), Query Frame = 1 
Query:    1 QETHEAKFELLMKQQDIQRRNLKSTFEAERKKV 99
            +ETHEAK+ELL+KQQDIQRRNLKSTFEAERKKV
Sbjct:   39 EETHEAKYELLVKQQDIQRRNLKSTFEAERKKV 71
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig152791.3490.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5JNT6_9PHAE1.390e-3289.04Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A836CAU2_9STRA3.680e-1662.86Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
D7G7B2_ECTSI6.670e-990.91Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig152791contigH-elongata_contig152791:576..1397 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size219
Cds size219
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929903.56659-CDS-H-elongata_contig152791:575..6901622929903.56659-CDS-H-elongata_contig152791:575..690Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig152791 576..690 -
1691679201.9698184-CDS-H-elongata_contig152791:575..6901691679201.9698184-CDS-H-elongata_contig152791:575..690Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig152791 576..690 -
1622929903.5797262-CDS-H-elongata_contig152791:1293..13971622929903.5797262-CDS-H-elongata_contig152791:1293..1397Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig152791 1294..1397 -
1691679201.9794621-CDS-H-elongata_contig152791:1293..13971691679201.9794621-CDS-H-elongata_contig152791:1293..1397Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig152791 1294..1397 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig152791.3490.1prot_H-elongata_contig152791.3490.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig152791 576..1397 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig152791.3490.1

>prot_H-elongata_contig152791.3490.1 ID=prot_H-elongata_contig152791.3490.1|Name=mRNA_H-elongata_contig152791.3490.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=73bp
QETHEAKFELLMKQQDIQRRNLKSTFEAERKKVFMYCRRAALKRMTRDVK
EDADEERRTMNNASDGMDNVFIG
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mRNA from alignment at H-elongata_contig152791:576..1397-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig152791.3490.1 ID=mRNA_H-elongata_contig152791.3490.1|Name=mRNA_H-elongata_contig152791.3490.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=822bp|location=Sequence derived from alignment at H-elongata_contig152791:576..1397- (Himanthalia elongata Himel1 dioecious)
CAGGAGACGCACGAGGCCAAGTTCGAGCTGCTCATGAAGCAGCAAGATAT
CCAGCGGAGGAACCTAAAGTCAACCTTCGAAGCGGAGCGGAAGAAGGTTT
TCATGTGAGAGTGTCCCACGGCGCGGATGCGAGGAAGGTGCGCGTAGTAC
GCGCTCGAAAAATATCGGGATCTCGGAATCTTTACCCACACGATTGAGAA
GCATAGGGATGAGGAGGCTGCATATCTATCCCCGTGTGCCTCGAGCAGGT
GGGAGCCAACGACGCCCTATATAGATTTGACTTGAGAGGGTGATGGCAGA
GCTTCCTGGCGCGCGTCGACGCGCGCCGTGTGAAGGCAGCACGCTCAAGC
TTTTAAAAAGGGGACTCATCGTGTTTGCCGGAGATTTTTTCGCCTAGAGA
GATAGAGATAGGTCAGAGTAGGAGTAAGAGTGCTTGGGGGGCAGGGGCGA
GGAGGTCCACAGCTGCTCTCGCTGGAGGGATCGCAGACATGCGTGACCAA
GTTCGCTAGGATTTATGATTATTTCCGGTAATACGGCCTTAAAGTTAAAG
TTAAAGTTAAAGTTGAAGGGTAAAAGAGACAAACATACCATAGACGCCGC
ACTTCGAGAAACATCCTGAAAAAAAGAACGCCCGTACCCCCCCCCCCCAC
ACCCCCCCGGCCTCCCTCCCTTCCCCTCCCTCCACACCCGTTCTCTCCGT
GTTTCAGGTACTGTCGGAGGGCGGCCTTGAAGCGAATGACGCGGGACGTG
AAGGAGGATGCCGATGAGGAAAGGAGGACCATGAACAATGCCTCCGACGG
AATGGACAATGTCTTCATCGGG
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Coding sequence (CDS) from alignment at H-elongata_contig152791:576..1397-

>mRNA_H-elongata_contig152791.3490.1 ID=mRNA_H-elongata_contig152791.3490.1|Name=mRNA_H-elongata_contig152791.3490.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=438bp|location=Sequence derived from alignment at H-elongata_contig152791:576..1397- (Himanthalia elongata Himel1 dioecious)
CAGGAGACGCACGAGGCCAAGTTCGAGCTGCTCATGAAGCAGCAAGATAT
CCAGCGGAGGAACCTAAAGTCAACCTTCGAAGCGGAGCGGAAGAAGGTTT
TCATCAGGAGACGCACGAGGCCAAGTTCGAGCTGCTCATGAAGCAGCAAG
ATATCCAGCGGAGGAACCTAAAGTCAACCTTCGAAGCGGAGCGGAAGAAG
GTTTTCATGTACTGTCGGAGGGCGGCCTTGAAGCGAATGACGCGGGACGT
GAAGGAGGATGCCGATGAGGAAAGGAGGACCATGAACAATGCCTCCGACG
GAATGGACAATGTCTTCATCGGGGTACTGTCGGAGGGCGGCCTTGAAGCG
AATGACGCGGGACGTGAAGGAGGATGCCGATGAGGAAAGGAGGACCATGA
ACAATGCCTCCGACGGAATGGACAATGTCTTCATCGGG
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