mRNA_H-elongata_contig15277.3487.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_H-elongata_contig15277.3487.1
Unique Name	mRNA_H-elongata_contig15277.3487.1
Type	mRNA
Organism	Himanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)

Homology

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BLAST of mRNA_H-elongata_contig15277.3487.1 vs. uniprot
Match: D8LR18_ECTSI (RING-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LR18_ECTSI)

HSP 1 Score: 78.2 bits (191), Expect = 1.870e-11
Identity = 37/73 (50.68%), Postives = 50/73 (68.49%), Query Frame = 1

Query:  583 PWTSREEVELPQEVLTADAVARLKRNTPECPICLADFCSKEVISRLPCMHVYHSGCIKDWLRQSNTCPVCKHR 801
            P ++R    LP E LTA A+A LK +  +C ICL DF + E  +RLPC+H+YH+ CI++WL+ S TCP CK R
Sbjct:  399 PASARAIAALPGEALTAGALAHLKDDGRQCCICLEDFEAGEKATRLPCLHLYHTVCIENWLQTSGTCPQCKFR 471

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BLAST of mRNA_H-elongata_contig15277.3487.1 vs. uniprot
Match: A0A6H5L176_9PHAE (RING-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L176_9PHAE)

HSP 1 Score: 76.3 bits (186), Expect = 1.080e-10
Identity = 36/73 (49.32%), Postives = 50/73 (68.49%), Query Frame = 1

Query:  583 PWTSREEVELPQEVLTADAVARLKRNTPECPICLADFCSKEVISRLPCMHVYHSGCIKDWLRQSNTCPVCKHR 801
            P ++R    LP E LTA ++A LK +  +C ICL +F + E  +RLPC+H+YHS CI++WL+ S TCP CK R
Sbjct:  532 PASARAIAALPGETLTAGSLAHLKDDGRQCCICLEEFEAGERATRLPCLHLYHSVCIENWLQTSGTCPQCKFR 604

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BLAST of mRNA_H-elongata_contig15277.3487.1 vs. uniprot
Match: W5NE42_LEPOC (Ring finger protein 181 n=2 Tax=Lepisosteus oculatus TaxID=7918 RepID=W5NE42_LEPOC)

HSP 1 Score: 68.2 bits (165), Expect = 1.030e-9
Identity = 24/63 (38.10%), Postives = 41/63 (65.08%), Query Frame = 1

Query:  610 LPQEVLTADAVARLKRNTPECPICLADFCSKEVISRLPCMHVYHSGCIKDWLRQSNTCPVCKH 798
            LP  +++ +          +CP+CL +F  +E + ++PC H++HSGCI  WL ++N+CPVC+H
Sbjct:   63 LPTVIISPEQAGSAADRGLKCPVCLLEFEEEETVRKMPCQHLFHSGCIMPWLGKTNSCPVCRH 125

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BLAST of mRNA_H-elongata_contig15277.3487.1 vs. uniprot
Match: UPI001C4B92BF (E3 ubiquitin-protein ligase RNF181 n=1 Tax=Sceloporus undulatus TaxID=8520 RepID=UPI001C4B92BF)

HSP 1 Score: 67.8 bits (164), Expect = 1.600e-9
Identity = 21/46 (45.65%), Postives = 37/46 (80.43%), Query Frame = 1

Query:  661 TPECPICLADFCSKEVISRLPCMHVYHSGCIKDWLRQSNTCPVCKH 798
            +P+CP+CL +F  +E + ++PC H++HSGC+  WL ++N+CP+C+H
Sbjct:   86 SPKCPVCLLEFEEEETVRKMPCQHLFHSGCLLPWLGKTNSCPLCRH 131

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BLAST of mRNA_H-elongata_contig15277.3487.1 vs. uniprot
Match: A0A8J7NZ34_ATRSP (RN181 ligase (Fragment) n=1 Tax=Atractosteus spatula TaxID=7917 RepID=A0A8J7NZ34_ATRSP)

HSP 1 Score: 67.0 bits (162), Expect = 2.970e-9
Identity = 22/44 (50.00%), Postives = 35/44 (79.55%), Query Frame = 1

Query:  667 ECPICLADFCSKEVISRLPCMHVYHSGCIKDWLRQSNTCPVCKH 798
            +CP+CL +F  +E + ++PC H++HSGCI  WL ++N+CPVC+H
Sbjct:   78 KCPVCLLEFEEEETVRKMPCQHLFHSGCIMPWLGKTNSCPVCRH 121

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BLAST of mRNA_H-elongata_contig15277.3487.1 vs. uniprot
Match: A0A835ICZ8_9MAGN (RING-type domain-containing protein n=1 Tax=Coptis chinensis TaxID=261450 RepID=A0A835ICZ8_9MAGN)

HSP 1 Score: 68.6 bits (166), Expect = 4.830e-9
Identity = 25/51 (49.02%), Postives = 39/51 (76.47%), Query Frame = 1

Query:  652 KRNTPE--CPICLADFCSKEVISRLPCMHVYHSGCIKDWLRQSNTCPVCKH 798
            K N+ E  CP+CL +FC    ++ +PC HV+H+GCIK+WL+ ++TCP+C+H
Sbjct:  197 KENSEEGSCPVCLDEFCEGIEVTLMPCKHVFHNGCIKEWLQTNHTCPLCRH 247

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BLAST of mRNA_H-elongata_contig15277.3487.1 vs. uniprot
Match: A0A834GIP1_RHOSS (RING-type domain-containing protein n=1 Tax=Rhododendron simsii TaxID=118357 RepID=A0A834GIP1_RHOSS)

HSP 1 Score: 67.0 bits (162), Expect = 7.380e-9
Identity = 24/44 (54.55%), Postives = 32/44 (72.73%), Query Frame = 1

Query:  670 CPICLADFCSKEVISRLPCMHVYHSGCIKDWLRQSNTCPVCKHR 801
            C +C  DFC    I+R+PC HVYHSGCI  WL+ SN CP+C+++
Sbjct:  165 CAVCFEDFCHGSEIARMPCSHVYHSGCIVQWLKTSNLCPLCRYQ 208

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BLAST of mRNA_H-elongata_contig15277.3487.1 vs. uniprot
Match: UPI000441AF65 (E3 ubiquitin-protein ligase RNF181 n=1 Tax=Python bivittatus TaxID=176946 RepID=UPI000441AF65)

HSP 1 Score: 63.2 bits (152), Expect = 9.480e-9
Identity = 20/44 (45.45%), Postives = 35/44 (79.55%), Query Frame = 1

Query:  667 ECPICLADFCSKEVISRLPCMHVYHSGCIKDWLRQSNTCPVCKH 798
            +CP+CL +F  +E + ++PC H++H+GCI  WL ++N+CP+C+H
Sbjct:   10 KCPVCLLEFEEQEGVRKMPCQHLFHTGCILPWLGKTNSCPLCRH 53

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BLAST of mRNA_H-elongata_contig15277.3487.1 vs. uniprot
Match: A0A444UV54_ACIRT (E3 ubiquitin-protein ligase RNF181 n=3 Tax=Acipenseroidei TaxID=186622 RepID=A0A444UV54_ACIRT)

HSP 1 Score: 65.1 bits (157), Expect = 1.410e-8
Identity = 29/64 (45.31%), Postives = 43/64 (67.19%), Query Frame = 1

Query:  610 LPQEVLT-ADAVARLKRNTPECPICLADFCSKEVISRLPCMHVYHSGCIKDWLRQSNTCPVCKH 798
            LP  V+T A A   LK     CP+CL +F  +E + ++PC H++HSGCI  WL ++N+CP+C+H
Sbjct:   63 LPTAVITPAQADKGLK-----CPVCLLEFEEEETVRKMPCEHLFHSGCILPWLGKTNSCPLCRH 121

[Close]

BLAST of mRNA_H-elongata_contig15277.3487.1 vs. uniprot
Match: UPI001F5DA4DC (E3 ubiquitin-protein ligase RNF181-like n=2 Tax=Lolium rigidum TaxID=89674 RepID=UPI001F5DA4DC)

HSP 1 Score: 64.3 bits (155), Expect = 1.560e-8
Identity = 28/61 (45.90%), Postives = 41/61 (67.21%), Query Frame = 1

Query:  616 QEVLTADAVARLKRNTPECPICLADFCSKEVISRLPCMHVYHSGCIKDWLRQSNTCPVCKH 798
            +E   A A ARL+    EC +CL DF +++++S++PC H +H GCI  WLR S  CP+C+H
Sbjct:   82 RETTWAAAGARLQT---ECAVCLKDFEAEDMVSKMPCDHCFHQGCISRWLRVSCVCPLCRH 139

The following BLAST results are available for this feature:

BLAST of mRNA_H-elongata_contig15277.3487.1 vs. uniprot

BLAST of mRNA_H-elongata_contig15277.3487.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
D8LR18_ECTSI	1.870e-11	50.68	RING-type domain-containing protein n=1 Tax=Ectoca...	[more]
A0A6H5L176_9PHAE	1.080e-10	49.32	RING-type domain-containing protein n=1 Tax=Ectoca...	[more]
W5NE42_LEPOC	1.030e-9	38.10	Ring finger protein 181 n=2 Tax=Lepisosteus oculat...	[more]
UPI001C4B92BF	1.600e-9	45.65	E3 ubiquitin-protein ligase RNF181 n=1 Tax=Scelopo...	[more]
A0A8J7NZ34_ATRSP	2.970e-9	50.00	RN181 ligase (Fragment) n=1 Tax=Atractosteus spatu...	[more]
A0A835ICZ8_9MAGN	4.830e-9	49.02	RING-type domain-containing protein n=1 Tax=Coptis...	[more]
A0A834GIP1_RHOSS	7.380e-9	54.55	RING-type domain-containing protein n=1 Tax=Rhodod...	[more]
UPI000441AF65	9.480e-9	45.45	E3 ubiquitin-protein ligase RNF181 n=1 Tax=Python ...	[more]
A0A444UV54_ACIRT	1.410e-8	45.31	E3 ubiquitin-protein ligase RNF181 n=3 Tax=Acipens...	[more]
UPI001F5DA4DC	1.560e-8	45.90	E3 ubiquitin-protein ligase RNF181-like n=2 Tax=Lo...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-elongata_contig15277	contig	H-elongata_contig15277:4235..6372 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious	2021-02-24

Properties


Property Name	Value
Taxonomic scope	Eukaryota
Seed ortholog score	80.5
Seed ortholog evalue	1.1e-12
Seed eggNOG ortholog	2880.D8LR18
EggNOG free text desc.	ubiquitin-protein transferase activity
EggNOG OGs	KOG0800@1,KOG0800@2759
COG Functional cat.	O
Best tax level	Eukaryota
Best eggNOG OG	NA\|NA\|NA
Hectar predicted targeting category	other localisation
Exons	1
Model size	2138
Cds size	645
Stop	1
Start	1

Relationships

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_H-elongata_contig15277.3487.1	prot_H-elongata_contig15277.3487.1	Himanthalia elongata Himel1 dioecious	polypeptide	H-elongata_contig15277 4400..5044 +

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622929903.3790119-UTR-H-elongata_contig15277:4234..4399	1622929903.3790119-UTR-H-elongata_contig15277:4234..4399	Himanthalia elongata Himel1 dioecious	UTR	H-elongata_contig15277 4235..4399 +
1691679201.9143932-UTR-H-elongata_contig15277:4234..4399	1691679201.9143932-UTR-H-elongata_contig15277:4234..4399	Himanthalia elongata Himel1 dioecious	UTR	H-elongata_contig15277 4235..4399 +
1622929903.4060771-UTR-H-elongata_contig15277:5044..6372	1622929903.4060771-UTR-H-elongata_contig15277:5044..6372	Himanthalia elongata Himel1 dioecious	UTR	H-elongata_contig15277 5045..6372 +
1691679201.941556-UTR-H-elongata_contig15277:5044..6372	1691679201.941556-UTR-H-elongata_contig15277:5044..6372	Himanthalia elongata Himel1 dioecious	UTR	H-elongata_contig15277 5045..6372 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622929903.3948395-CDS-H-elongata_contig15277:4399..5044	1622929903.3948395-CDS-H-elongata_contig15277:4399..5044	Himanthalia elongata Himel1 dioecious	CDS	H-elongata_contig15277 4400..5044 +
1691679201.9303455-CDS-H-elongata_contig15277:4399..5044	1691679201.9303455-CDS-H-elongata_contig15277:4399..5044	Himanthalia elongata Himel1 dioecious	CDS	H-elongata_contig15277 4400..5044 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at H-elongata_contig15277:4235..6372+
coding sequence from alignment at H-elongata_contig15277:4235..6372+

protein sequence of mRNA_H-elongata_contig15277.3487.1

>prot_H-elongata_contig15277.3487.1 ID=prot_H-elongata_contig15277.3487.1|Name=mRNA_H-elongata_contig15277.3487.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=215bp
MPPFFLPLFASHSQTNPVARNVSMGHGPPMDPASAHATMMLEQHREIANR
ANSHMALALEHHRQMADYSRIRMARLIEHQREPAEQINSSPETLMQHHQG
ITDRTMFLQPPRRGEARSYYTVPAVGQHPFQGGRYSEERPWTSREEVELP
QEVLTADAVARLKRNTPECPICLADFCSKEVISRLPCMHVYHSGCIKDWL
RQSNTCPVCKHRAS*

mRNA from alignment at H-elongata_contig15277:4235..6372+

Legend: UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_H-elongata_contig15277.3487.1 ID=mRNA_H-elongata_contig15277.3487.1|Name=mRNA_H-elongata_contig15277.3487.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2138bp|location=Sequence derived from alignment at H-elongata_contig15277:4235..6372+ (Himanthalia elongata Himel1 dioecious)
CAGGTGACGGGCGATTATTTTAGAGAGCACAGCGAGCGCTGCGGTGGCAC
ACCGCCTTTCTTTTGGCCAGTATTCGCGAGCCACCCGGAGGAGTATAGCG
AGGGCACACCGCCTTTCTTTTGGCCAGGATTCGCGAGCCATCCCGAGGGT
AGTTATGGCGAGCACATGCCACCTTTCTTTTTACCATTATTCGCGAGTCA
TTCCCAGACCAACCCTGTTGCAAGGAACGTATCTATGGGACATGGACCCC
CGATGGACCCAGCTAGCGCCCACGCGACGATGATGCTGGAGCAACACCGG
GAGATAGCTAACCGAGCAAATTCCCACATGGCGTTGGCATTGGAACACCA
TCGACAGATGGCTGACTATTCGAGGATCCGTATGGCTAGGTTAATCGAAC
ACCAGCGGGAGCCAGCTGAACAGATAAATTCCAGCCCGGAGACTTTGATG
CAACACCATCAGGGGATAACCGATAGGACGATGTTCTTACAGCCGCCGCG
TCGAGGAGAAGCGAGGTCTTACTACACAGTGCCGGCGGTAGGACAACATC
CTTTCCAAGGGGGACGTTATTCTGAGGAACGCCCGTGGACGTCAAGGGAA
GAAGTTGAGCTTCCCCAGGAGGTGCTAACCGCTGATGCGGTAGCGCGCCT
GAAGCGCAATACACCGGAATGTCCCATCTGTTTGGCGGATTTCTGTTCGA
AAGAGGTCATCTCGCGCTTGCCGTGCATGCACGTGTACCACTCTGGCTGT
ATTAAAGACTGGTTGCGGCAGTCTAACACCTGCCCGGTGTGCAAGCACAG
AGCCTCTTGAAAGCGCCTAATGTTTGCGGAAAAGTTCGTTGACTTCGGAC
TTACCATCGTCGGCTTATATGCCTCACGTTTGTTCACCTTTCTCTAGAAG
GGCGCTGTGCTCTACACCTGCGATAGCCTTTCTGTACAGAGGTGTTCAAT
CAATATTAGCCTTCAAACCAAGCTCCGAGCGAGGGGCCTCCAGGAGAACA
TCGAAAGAAGCAAGGTTGTGCTGGTGCCGCTGCGGGGGACTGAAGGTTGC
AAGCAGCGACACAAATTAATTGTAGGTTTGCCGTCCACCTTAAAATGTTA
TAATATTTTCTATTGCACCTTGCAATTTGGCCCAACGTCGTTTTGTCTAT
CTACGAACGTCTGTATGCGATTTCTCATAATGGGTCGTTGTTCATGGCTA
TCATGAAAACTTCATCCAATTTTTACGACGATTTATTTCGTAACTCCACC
TCTTTTATAGCTGCTGTTCTGTGGATGCCTAGCTGCGATAGATGGGAGAC
CTAATATTCTGAGGGTGATATCTGACCTTTACCCCGTTTTCTTATATATT
TCTAACATTGGATCGACTTGGACTGGATAATATAGCGTTGCAAAATAATT
TACTTCCTGAACGTTTAACTACTTTGATTTAATAAGCATTATCGAACCTG
AACAGTCCGCTTGGGCACTGCATAATCAACTTCGGTCGTAGAGTGTTACG
ATAACCAACTACCCTGCGGTGGTTGTGATTTGGCTTGTGATTTGGCTTTT
ACATGTGGTATATTAGATATCCTACTAACAGCACGACATTGGTGTCGGAA
GCCAATTTTGACGTGATTTGTTGCTCTTTGAAATATATTTCGGTTTAATG
CACAACAAGGGCCTAAAGGCTAGTTCTACTTTTCCGTCGATCCTTGCGGT
GATTCAAACGAAATCGGACCCATTATCAACGAGCTGGGTCACCAAGGGGC
ATAAGAGCTATTGCTTTGGCAGTTAACTAAAATTATGTAAATATATTTGG
GGTACACAACAAAGGCCTAAATGCTCAATATGTTGCTATTGCCGTCGATC
CTCGTGGTAATTCAAGCGAAATCGCACCCGTCAGCGAACTGGGCGAACTA
TTTCTTTCGCGGTGGCTTAAGTAGAAATTTCCATTTAACGCTTTTTATAT
AGCCAGTGTCTATTTCTCACGGGTATCAGTTTTGACCATCCGGTTTTACG
TGTGTGCTGGGACATGCAAACGGGTTGTTGTAGGTTTTACTATATTTGGC
CTGACTCTGAGACGATAGCGCAATGGTATAATTATTCGTCGATTCATTCA
TTTGTATAATGCCACTTTTAACGAACGCGCTAGGTCAC

Coding sequence (CDS) from alignment at H-elongata_contig15277:4235..6372+

>mRNA_H-elongata_contig15277.3487.1 ID=mRNA_H-elongata_contig15277.3487.1|Name=mRNA_H-elongata_contig15277.3487.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1290bp|location=Sequence derived from alignment at H-elongata_contig15277:4235..6372+ (Himanthalia elongata Himel1 dioecious)
ATGCCACCTTTCTTTTTACCATTATTCGCGAGTCATTCCCAGACCAACCC
TGTTGCAAGGAACGTATCTATGGGACATGGACCCCCGATGGACCCAGCTA
GCGCCCACGCGACGATGATGCTGGAGCAACACCGGGAGATAGCTAACCGA
GCAAATTCCCACATGGCGTTGGCATTGGAACACCATCGACAGATGGCTGA
CTATTCGAGGATCCGTATGGCTAGGTTAATCGAACACCAGCGGGAGCCAG
CTGAACAGATAAATTCCAGCCCGGAGACTTTGATGCAACACCATCAGGGG
ATAACCGATAGGACGATGTTCTTACAGCCGCCGCGTCGAGGAGAAGCGAG
GTCTTACTACACAGTGCCGGCGGTAGGACAACATCCTTTCCAAGGGGGAC
GTTATTCTGAGGAACGCCCGTGGACGTCAAGGGAAGAAGTTGAGCTTCCC
CAGGAGGTGCTAACCGCTGATGCGGTAGCGCGCCTGAAGCGCAATACACC
GGAATGTCCCATCTGTTTGGCGGATTTCTGTTCGAAAGAGGTCATCTCGC
GCTTGCCGTGCATGCACGTGTACCACTCTGGCTGTATTAAAGACTGGTTG
CGGCAGTCTAACACCTGCCCGGTGTGCAAGCACAGAGCCTCTTGAATGCC
ACCTTTCTTTTTACCATTATTCGCGAGTCATTCCCAGACCAACCCTGTTG
CAAGGAACGTATCTATGGGACATGGACCCCCGATGGACCCAGCTAGCGCC
CACGCGACGATGATGCTGGAGCAACACCGGGAGATAGCTAACCGAGCAAA
TTCCCACATGGCGTTGGCATTGGAACACCATCGACAGATGGCTGACTATT
CGAGGATCCGTATGGCTAGGTTAATCGAACACCAGCGGGAGCCAGCTGAA
CAGATAAATTCCAGCCCGGAGACTTTGATGCAACACCATCAGGGGATAAC
CGATAGGACGATGTTCTTACAGCCGCCGCGTCGAGGAGAAGCGAGGTCTT
ACTACACAGTGCCGGCGGTAGGACAACATCCTTTCCAAGGGGGACGTTAT
TCTGAGGAACGCCCGTGGACGTCAAGGGAAGAAGTTGAGCTTCCCCAGGA
GGTGCTAACCGCTGATGCGGTAGCGCGCCTGAAGCGCAATACACCGGAAT
GTCCCATCTGTTTGGCGGATTTCTGTTCGAAAGAGGTCATCTCGCGCTTG
CCGTGCATGCACGTGTACCACTCTGGCTGTATTAAAGACTGGTTGCGGCA
GTCTAACACCTGCCCGGTGTGCAAGCACAGAGCCTCTTGA