mRNA_H-elongata_contig152740.3485.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig152740.3485.1
Unique NamemRNA_H-elongata_contig152740.3485.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig152740.3485.1 vs. uniprot
Match: A0A6H5JJW9_9PHAE (Ribonuclease n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JJW9_9PHAE)

HSP 1 Score: 176 bits (446), Expect = 2.770e-52
Identity = 80/104 (76.92%), Postives = 92/104 (88.46%), Query Frame = 1
Query:    1 KPSVLIDGNFVPPGLAGSGVDAECVIGGDSTEYCIAAASIIAKVTRDRLMIEYGKCWPMFGFENHKGYGTRAHHDALRQHGMVDIHRRSFLKKMEAAGGKLAEY 312
            KP VL+DGNF PPGL  + V+AECV+GGD  EYCIAAASIIAKVTRDRLMIE+G+ WP+FGFE HKGYGT AH DA+R+HGMV+IHRRSFLK ME++GGKLAEY
Sbjct:  243 KPFVLVDGNFTPPGLGDAKVEAECVVGGDGLEYCIAAASIIAKVTRDRLMIEFGERWPVFGFERHKGYGTAAHRDAIREHGMVEIHRRSFLKNMESSGGKLAEY 346          
BLAST of mRNA_H-elongata_contig152740.3485.1 vs. uniprot
Match: D8RCY3_SELML (Ribonuclease (Fragment) n=5 Tax=Selaginella moellendorffii TaxID=88036 RepID=D8RCY3_SELML)

HSP 1 Score: 108 bits (270), Expect = 1.640e-27
Identity = 54/89 (60.67%), Postives = 67/89 (75.28%), Query Frame = 1
Query:    4 PSVLIDGNFVPPGLAGSGVDAECVIGGDSTEYCIAAASIIAKVTRDRLMIEYGKCWPMFGFENHKGYGTRAHHDALRQHGMVDIHRRSF 270
            P +LIDGN +P GL  SG  A  V+ GD+  + IAAASI+AKVTRDRLM +Y K WP++GF++HKGYGT +H  AL +HG  DIHRRSF
Sbjct:   99 PYILIDGNRIPGGL--SGKHARSVVKGDAESHVIAAASILAKVTRDRLMEDYDKRWPLYGFKDHKGYGTASHTAALLKHGPCDIHRRSF 185          
BLAST of mRNA_H-elongata_contig152740.3485.1 vs. uniprot
Match: A0A836CIH6_9STRA (Ribonuclease n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CIH6_9STRA)

HSP 1 Score: 105 bits (261), Expect = 5.340e-26
Identity = 54/90 (60.00%), Postives = 64/90 (71.11%), Query Frame = 1
Query:    1 KPSVLIDGNFVPPGLAGSGVDAECVIGGDSTEYCIAAASIIAKVTRDRLMIEYGKCWPMFGFENHKGYGTRAHHDALRQHGMVDIHRRSF 270
            K +VLIDGN VP  +    + AEC+I GD  EY IAAASIIAKVTRDRLM +Y + +P +GFE HKGYGT AH  A+ QHG   IHR +F
Sbjct:  118 KAAVLIDGNRVPDNME---LPAECIIKGDGKEYSIAAASIIAKVTRDRLMRQYHEQYPAYGFERHKGYGTAAHMAAIAQHGACPIHRMTF 204          
BLAST of mRNA_H-elongata_contig152740.3485.1 vs. uniprot
Match: A0A1F5B153_9BACT (Ribonuclease HII n=1 Tax=Candidatus Azambacteria bacterium RBG_16_47_10 TaxID=1797292 RepID=A0A1F5B153_9BACT)

HSP 1 Score: 102 bits (254), Expect = 5.070e-25
Identity = 52/100 (52.00%), Postives = 69/100 (69.00%), Query Frame = 1
Query:    1 KPSVLIDGNFVPPGLAGSGVDAECVIGGDSTEYCIAAASIIAKVTRDRLMIEYGKCWPMFGFENHKGYGTRAHHDALRQHGMVDIHRRSFLKKMEAAGGK 300
            +P + IDG  + P ++   VD + VIGGD+  + IAAASIIAKVTRDR+M  Y K +P + FE HKGYGT+ H+ A+R+HG   IHR+SFLK +   G K
Sbjct:  105 QPYLYIDGRDIIPDMS---VDQKAVIGGDAIVFSIAAASIIAKVTRDRMMGVYAKEYPQYQFEQHKGYGTKLHYAAMREHGPCPIHRKSFLKSVIDKGAK 201          
BLAST of mRNA_H-elongata_contig152740.3485.1 vs. uniprot
Match: UPI0019AD1CA9 (ribonuclease HII n=1 Tax=Clostridiaceae bacterium NSJ-31 TaxID=2763658 RepID=UPI0019AD1CA9)

HSP 1 Score: 102 bits (254), Expect = 5.070e-25
Identity = 52/94 (55.32%), Postives = 66/94 (70.21%), Query Frame = 1
Query:    7 SVLIDGNFVPPGLAGSGVDAECVIGGDSTEYCIAAASIIAKVTRDRLMIEYGKCWPMFGFENHKGYGTRAHHDALRQHGMVDIHRRSFLKKMEA 288
            +V IDGN +P      G+ AECV+GGD++   IAAASI+AKV+RDR M    + +P + FE HKGYGT+ H+  L Q+GM  IHRRSFLKK EA
Sbjct:  111 AVYIDGNQMPDL---GGLKAECVVGGDASSASIAAASILAKVSRDRYMARMAEQYPQYQFERHKGYGTKLHYQMLEQYGMSPIHRRSFLKKWEA 201          
BLAST of mRNA_H-elongata_contig152740.3485.1 vs. uniprot
Match: W4GYY1_9STRA (Ribonuclease (Fragment) n=3 Tax=Aphanomyces astaci TaxID=112090 RepID=W4GYY1_9STRA)

HSP 1 Score: 103 bits (258), Expect = 6.820e-25
Identity = 52/86 (60.47%), Postives = 59/86 (68.60%), Query Frame = 1
Query:   13 LIDGNFVPPGLAGSGVDAECVIGGDSTEYCIAAASIIAKVTRDRLMIEYGKCWPMFGFENHKGYGTRAHHDALRQHGMVDIHRRSF 270
            LIDGN +PP      +  ECVI GDS  Y IAAASIIAKVTRDRLM+ Y K WP +GF  HKGYGTR H  A+ +HG   IHR +F
Sbjct:  193 LIDGNKMPP----LSIQGECVIKGDSKVYAIAAASIIAKVTRDRLMVVYDKQWPEYGFAQHKGYGTRMHMAAIHKHGATPIHRMTF 274          
BLAST of mRNA_H-elongata_contig152740.3485.1 vs. uniprot
Match: A0A1C6GIU2_9FIRM (Ribonuclease HII n=3 Tax=Oscillospiraceae TaxID=216572 RepID=A0A1C6GIU2_9FIRM)

HSP 1 Score: 101 bits (252), Expect = 1.010e-24
Identity = 52/90 (57.78%), Postives = 64/90 (71.11%), Query Frame = 1
Query:   13 LIDGNFVPPGLAGSGVDAECVIGGDSTEYCIAAASIIAKVTRDRLMIEYGKCWPMFGFENHKGYGTRAHHDALRQHGMVDIHRRSFLKKM 282
            LIDGN  PP    + V  + VIGGD     IAAASI+AKVTRDRLM+E    +P +GFE HKGYGT+AH+ A+ Q G+  +HRRSFLKK+
Sbjct:  115 LIDGNRCPP----APVPCQWVIGGDGKSASIAAASILAKVTRDRLMVEAAATYPGYGFERHKGYGTKAHYAAIAQLGLTPLHRRSFLKKV 200          
BLAST of mRNA_H-elongata_contig152740.3485.1 vs. uniprot
Match: UPI00164AA199 (ribonuclease HII n=1 Tax=Anaerofilum sp. BX8 TaxID=2763016 RepID=UPI00164AA199)

HSP 1 Score: 101 bits (251), Expect = 1.360e-24
Identity = 49/90 (54.44%), Postives = 65/90 (72.22%), Query Frame = 1
Query:   10 VLIDGNFVPPGLAGSGVDAECVIGGDSTEYCIAAASIIAKVTRDRLMIEYGKCWPMFGFENHKGYGTRAHHDALRQHGMVDIHRRSFLKK 279
            VLIDGN  P GL   G+ A  V+ GD+T  CIAAAS++AKVTRDR M E G+ +P + FE HKGY T+ H++ + Q+G+ D +R+SFLKK
Sbjct:  111 VLIDGNRCPEGL---GMPARAVVKGDATSACIAAASVLAKVTRDRYMTELGRRYPQYQFEKHKGYPTKLHYELIAQYGIQDFYRKSFLKK 197          
BLAST of mRNA_H-elongata_contig152740.3485.1 vs. uniprot
Match: A0A3C1CUE3_9FIRM (Ribonuclease HII n=6 Tax=Eubacteriales TaxID=186802 RepID=A0A3C1CUE3_9FIRM)

HSP 1 Score: 100 bits (250), Expect = 1.790e-24
Identity = 45/90 (50.00%), Postives = 66/90 (73.33%), Query Frame = 1
Query:   13 LIDGNFVPPGLAGSGVDAECVIGGDSTEYCIAAASIIAKVTRDRLMIEYGKCWPMFGFENHKGYGTRAHHDALRQHGMVDIHRRSFLKKM 282
            +IDGN +PP      +DAEC++ GD+    IA ASI+AKV+RDRL+ +Y + +PM+GF+ HKGYGT+ H +A+ ++G    HR+SFLKK+
Sbjct:  111 MIDGNKIPP----IDIDAECIVKGDAKSMSIACASILAKVSRDRLLYKYAEEYPMYGFDKHKGYGTKVHREAILKYGPCPYHRKSFLKKL 196          
BLAST of mRNA_H-elongata_contig152740.3485.1 vs. uniprot
Match: A0A6I2JCG2_9GAMM (Ribonuclease HII n=26 Tax=Moraxellaceae TaxID=468 RepID=A0A6I2JCG2_9GAMM)

HSP 1 Score: 100 bits (249), Expect = 2.030e-24
Identity = 49/95 (51.58%), Postives = 66/95 (69.47%), Query Frame = 1
Query:   10 VLIDGNFVPPGLAGSGVDAECVIGGDSTEYCIAAASIIAKVTRDRLMIEYGKCWPMFGFENHKGYGTRAHHDALRQHGMVDIHRRSFLKKMEAAG 294
            VL+DGN VP GL+   +  + V+GGD+    I+AASI+AKVTRD  M+E  K +P FGF  HKGY T+AH DA+ +HG++D HRRS+    +A G
Sbjct:   96 VLVDGNKVPKGLS---MSCDAVVGGDALHAEISAASILAKVTRDHEMVELDKLYPQFGFAKHKGYPTKAHFDAIAEHGVIDQHRRSYSPVKKALG 187          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig152740.3485.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JJW9_9PHAE2.770e-5276.92Ribonuclease n=2 Tax=Ectocarpus TaxID=2879 RepID=A... [more]
D8RCY3_SELML1.640e-2760.67Ribonuclease (Fragment) n=5 Tax=Selaginella moelle... [more]
A0A836CIH6_9STRA5.340e-2660.00Ribonuclease n=1 Tax=Tribonema minus TaxID=303371 ... [more]
A0A1F5B153_9BACT5.070e-2552.00Ribonuclease HII n=1 Tax=Candidatus Azambacteria b... [more]
UPI0019AD1CA95.070e-2555.32ribonuclease HII n=1 Tax=Clostridiaceae bacterium ... [more]
W4GYY1_9STRA6.820e-2560.47Ribonuclease (Fragment) n=3 Tax=Aphanomyces astaci... [more]
A0A1C6GIU2_9FIRM1.010e-2457.78Ribonuclease HII n=3 Tax=Oscillospiraceae TaxID=21... [more]
UPI00164AA1991.360e-2454.44ribonuclease HII n=1 Tax=Anaerofilum sp. BX8 TaxID... [more]
A0A3C1CUE3_9FIRM1.790e-2450.00Ribonuclease HII n=6 Tax=Eubacteriales TaxID=18680... [more]
A0A6I2JCG2_9GAMM2.030e-2451.58Ribonuclease HII n=26 Tax=Moraxellaceae TaxID=468 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig152740contigH-elongata_contig152740:270..1061 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score181.0
Seed ortholog evalue2.9e-43
Seed eggNOG ortholog2880.D7FM98
KEGG koko:K03470,ko:K10743
KEGG Pathwayko03030,map03030
GOsGO:0003674,GO:0003824,GO:0004518,GO:0004519,GO:0004521,GO:0004523,GO:0004540,GO:0005575,GO:0005622,GO:0005623,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006271,GO:0006273,GO:0006281,GO:0006298,GO:0006401,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009987,GO:0016070,GO:0016787,GO:0016788,GO:0016891,GO:0016893,GO:0019439,GO:0022616,GO:0032299,GO:0032991,GO:0033554,GO:0033567,GO:0034641,GO:0034645,GO:0034655,GO:0043137,GO:0043170,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044270,GO:0044424,GO:0044464,GO:0046483,GO:0046700,GO:0050896,GO:0051716,GO:0071704,GO:0090304,GO:0090305,GO:0090501,GO:0090502,GO:0140098,GO:1901360,GO:1901361,GO:1901575,GO:1901576
EggNOG free text desc.RNA-DNA hybrid ribonuclease activity
EggNOG OGsCOG0164@1,KOG2299@2759
EC3.1.26.4
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03032
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionRibonuclease HII/HIII
Ec32 orthologEc-17_003740.1
Exons2
Model size321
Cds size321
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929903.0783005-CDS-H-elongata_contig152740:269..4191622929903.0783005-CDS-H-elongata_contig152740:269..419Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig152740 270..419 +
1691679201.8078928-CDS-H-elongata_contig152740:269..4191691679201.8078928-CDS-H-elongata_contig152740:269..419Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig152740 270..419 +
1622929903.0948162-CDS-H-elongata_contig152740:890..10611622929903.0948162-CDS-H-elongata_contig152740:890..1061Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig152740 891..1061 +
1691679201.8270853-CDS-H-elongata_contig152740:890..10611691679201.8270853-CDS-H-elongata_contig152740:890..1061Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig152740 891..1061 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig152740.3485.1prot_H-elongata_contig152740.3485.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig152740 270..1061 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig152740.3485.1

>prot_H-elongata_contig152740.3485.1 ID=prot_H-elongata_contig152740.3485.1|Name=mRNA_H-elongata_contig152740.3485.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=107bp
KPSVLIDGNFVPPGLAGSGVDAECVIGGDSTEYCIAAASIIAKVTRDRLM
IEYGKCWPMFGFENHKGYGTRAHHDALRQHGMVDIHRRSFLKKMEAAGGK
LAEYSG*
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mRNA from alignment at H-elongata_contig152740:270..1061+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig152740.3485.1 ID=mRNA_H-elongata_contig152740.3485.1|Name=mRNA_H-elongata_contig152740.3485.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=792bp|location=Sequence derived from alignment at H-elongata_contig152740:270..1061+ (Himanthalia elongata Himel1 dioecious)
AAGCCATCCGTGCTTATCGACGGCAACTTCGTTCCACCCGGACTGGCGGG ATCGGGGGTGGACGCGGAATGCGTGATCGGGGGTGACTCAACCGAGTACT GCATAGCGGCGGCGAGCATCATCGCCAAAGTCACCCGAGATCGACTCATG GTGAGTTAAATGCGTCCCGGGGCAGAGACCGAGGGCGTGTAATATTTTCC CCTCTGCGTTTTGTTTCCCGCGGTCAGCGTCGTCGCCGTCGTTCTTTGGG CGAGCTGGCGTTCTTTCAACCTTCGGGTGGGTAAGGAGTAAAGTCACCTT TCACCCTCAGGGTGGGTTACCGTAAGGACCCTGTTTACGCCCTTCTCTTG AAGATGAGCAACACGCCATTATTCTTCTGTCCTTCTCAAGAGGGTAATGA CGTCATATGACAACCGGTAATGACGTCATGACAGTCCGTCGACCGGTAAT CCCCCCCCATCCCCAATATTATTAATGCCTTCTATAATAGTTCGACTCAG TACATGAGTCACCATACCCATTCGGACTTCGAACTTCGGTCATCAGGAGT AGGCGTTTTTAATCCCCGATGCTTCCTGCACAACTCCGACGCTGGTCGGA TCGCCAAACTTTCCCCGACAGATTGAGTACGGGAAATGCTGGCCGATGTT CGGGTTCGAGAACCACAAAGGGTACGGAACGAGGGCCCACCACGACGCGC TCCGGCAGCATGGGATGGTCGACATCCACCGGAGAAGTTTTTTGAAAAAG ATGGAGGCTGCCGGTGGGAAGCTCGCCGAATATTCTGGATGA
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Coding sequence (CDS) from alignment at H-elongata_contig152740:270..1061+

>mRNA_H-elongata_contig152740.3485.1 ID=mRNA_H-elongata_contig152740.3485.1|Name=mRNA_H-elongata_contig152740.3485.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=642bp|location=Sequence derived from alignment at H-elongata_contig152740:270..1061+ (Himanthalia elongata Himel1 dioecious)
AAGCCATCCGTGCTTATCGACGGCAACTTCGTTCCACCCGGACTGGCGGG
ATCGGGGGTGGACGCGGAATGCGTGATCGGGGGTGACTCAACCGAGTACT
GCATAGCGGCGGCGAGCATCATCGCCAAAGTCACCCGAGATCGACTCATG
AAGCCATCCGTGCTTATCGACGGCAACTTCGTTCCACCCGGACTGGCGGG
ATCGGGGGTGGACGCGGAATGCGTGATCGGGGGTGACTCAACCGAGTACT
GCATAGCGGCGGCGAGCATCATCGCCAAAGTCACCCGAGATCGACTCATG
ATTGAGTACGGGAAATGCTGGCCGATGTTCGGGTTCGAGAACCACAAAGG
GTACGGAACGAGGGCCCACCACGACGCGCTCCGGCAGCATGGGATGGTCG
ACATCCACCGGAGAAGTTTTTTGAAAAAGATGGAGGCTGCCGGTGGGAAG
CTCGCCGAATATTCTGGATGAATTGAGTACGGGAAATGCTGGCCGATGTT
CGGGTTCGAGAACCACAAAGGGTACGGAACGAGGGCCCACCACGACGCGC
TCCGGCAGCATGGGATGGTCGACATCCACCGGAGAAGTTTTTTGAAAAAG
ATGGAGGCTGCCGGTGGGAAGCTCGCCGAATATTCTGGATGA
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